Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Reverse (-)

6272171 .. 6277762

Gene Structure 5592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1079600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGACGCTCAGTCGCAGCAGCAAGCTGGACCAGTGAAGAAGAAGGAGACTCGGGGCCGGAAGCCCAAGCCCAAGGAAGAGAAGAAGGACGACCACCAACAGCAAGCCAAGCTCAAGAAGTCGCAGCAGAACGCCACAGTCGACGACAAGTACACTCAGTGGAAGTCCCTCGTCCCCATCCTCTATGACTGGCTTGCCAACCACAACCTCGTCTGGCCCTCCCTCTCTTGCCGGTGGGGTCCTCAGCTCGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCCGAGCAGGCAAGCTTTGCTCATCTCAGTTTTGATTTCCCGCAGTTAGTTTTGAATATTTATACCGATGGCAGTGTCCCAAATACTCTGGTTATTGCAAATTGTGAGATTGTCAAACCTAGAGTTGCCGCTGCAGAGCATATATCTCAGTTCAATGAGGAAGCCCGCTCACCATTTGTGAAGAAGTACAAGACCATCATTCATCCTGGAGAGGTAAACAGAATCAGAGAACTTCCACAGAACACTAAGATAGTGGCCACGCATACCGACAGTCCTGATGTTCTAATTTGGGATGTCGAAGCTCAACCTAACCGTCATGCTGTCCTAGGAGCTACAACCTCGCGTCCAGATTTGATTTTGACTGGACATCAAGATAATGCAGAATATGCCCTTGCAATGTGTCCAACTGAGCCCTATGTGCTCTCTGGAGGGAAGGACAAAACAGTGGTGTTGTGGAGCATTCAGGACCATATAGCAGCCTCTACCACTGATCCAGCAGCAAACAAGTCTCCAGGATCTGGTGCATCAATCATTAAAAACTCAAGGTCTGGGGATGGTAATGATAAAGCTACCGATGGTCCTACTGTTGCTCCTCGGGGAATCTACTATGGGCATGAGGATACAGTCGAAGATGTGGCGTTTTGCCCATCTAGTTCACAGGAGTTCTGTAGTGTTGGTGATGATTCTTGCCTCATATTATGGGATGCACGTGTCGGCTCTAGCCCTGCTGTGAAGGTTGAAAAGGCTCATGATGCTGATGTTCACTGTGTTGATTGGAATCCCCATAATGATAACCTTATTCTAACAGGGTCAGCAGATAATTCTGTACGCGTGTTTGATCGTCGGAATCTCACTTCTGATGGAGTGGGGGAACCTATATTTAAATTTGAGGGTCATACAGCAGCTGTTCTTTGTGTTCAGTGGTGTCCAGACAAATCGTCTGTCTTTGGAAGTTCTGCAGAGGATGGTCTTTTAAACATTTGGGATTATGAGAAGGTCGGTAAGGAGCGAACTCCAAAAGGCCCAACTTCTCCACCCGGCCTGTTTTTCCAGCATGCTGGGCACAGGGACAAGGTTGTTGATTTTCATTGGAATGCATCTGATCCATGGACTGTTGTCAGTGTCTCTGATGACTGTGATAGTACTGGCGGAGGGGGCACATTGCAGATATGGAGAATGAGTGATCTGATCTACAGGCCCGAAGAGGAGGTTCTGGCAGAGCTTGAGAAGTTCAAGTCCCATGTTGTTTCCTGTACTTCAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

519

Amino Acids

57.35

Weight (kDa)

5.78

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	49 - 102	5e-15	Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_TEP1_2nd	PF25047	291 - 429	5.4e-11	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	297 - 428	9.2e-20	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	297 - 379	1.1e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	299 - 376	1.3e-06	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	299 - 378	3.2e-06	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	300 - 375	1.2e-09	EIPR1 beta-propeller
WDR55	PF24796	301 - 428	1.9e-06	WDR55
WD40_CDC20-Fz	PF24807	301 - 427	2.6e-15	CDC20/Fizzy WD40 domain
Beta-prop_RIG_2nd	PF23775	302 - 379	9.2e-06	RIG second beta-propeller
Beta-prop_Aladin	PF25460	304 - 433	7.6e-07	Aladin seven-bladed propeller
Beta-prop_EML_2	PF23414	311 - 431	6.6e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	343 - 376	9.3e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	344 - 473	3.6e-11	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	344 - 474	1.3e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	346 - 431	1.1e-12	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	347 - 429	9.3e-08	WDHD1 first WD40 domain
WD40	PF00400	386 - 425	9.1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccBSI	CCGCTC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	631, 1119
AciI	CCGC	4 cut(s)	329, 417, 454, 1437
AclWI	GGATC	3 cut(s)	773, 811, 1385
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	1172
AcvI	CACGTG	1 cut(s)	998
AdeI	CACNNNGTG	1 cut(s)	159
AfaI	GTAC	5 cut(s)	152, 476, 1116, 1432, 1543
AfiI	CCNNNNNNNGG	1 cut(s)	806
AflIII	ACRYGT	2 cut(s)	997, 1117
AgsI	TTSAA	5 cut(s)	343, 442, 1028, 1522, 1548
AhdI	GACNNNNNGTC	2 cut(s)	10, 1225
AjnI	CCWGG	2 cut(s)	493, 799
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	4 cut(s)	41, 284, 801, 1417
AlwI	GGATC	3 cut(s)	773, 811, 1385
AlwNI	CAGNNNCTG	2 cut(s)	806, 1193
Ama87I	CYCGRG	3 cut(s)	51, 248, 882
AoxI	GGCC	6 cut(s)	55, 215, 543, 1309, 1327, 1484
ApeKI	GCWGC	7 cut(s)	16, 19, 124, 419, 764, 785, 1190
ApoI	RAATTY	1 cut(s)	1172
ArsI	GACNNNNNNTTYG	2 cut(s)	1215, 1247
AspA2I	CCTAGG	1 cut(s)	613
AspS9I	GGNCC	8 cut(s)	29, 55, 216, 239, 754, 866, 1310, 1485
AsuC2I	CCSGG	1 cut(s)	1326
AsuHPI	GGTGA	2 cut(s)	450, 977
AvaI	CYCGRG	3 cut(s)	51, 248, 882
AvaII	GGWCC	4 cut(s)	29, 239, 754, 866
AvrII	CCTAGG	1 cut(s)	613
BaeGI	GKGCMC	2 cut(s)	1353, 1448
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	702
BbrPI	CACGTG	1 cut(s)	998
Bbv12I	GWGCWC	1 cut(s)	711
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	7 cut(s)	28, 31, 136, 406, 776, 797, 1202
BccI	CCATC	8 cut(s)	185, 350, 491, 836, 857, 943, 1142, 1247
BciT130I	CCWGG	2 cut(s)	495, 801
BciVI	GTATCC	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	1326
BcoDI	GTCTC	4 cut(s)	41, 284, 801, 1417
BfaI	CTAG	4 cut(s)	408, 614, 939, 1008
BfmI	CTRYAG	4 cut(s)	420, 955, 1245, 1480
BfuI	GTATCC	1 cut(s)	901
BisI	GCNGC	8 cut(s)	17, 20, 125, 417, 420, 765, 786, 1191
BlnI	CCTAGG	1 cut(s)	613
BlsI	GCNGC	8 cut(s)	18, 21, 126, 418, 421, 766, 787, 1192
BmcAI	AGTACT	1 cut(s)	1432
Bme1390I	CCNGG	3 cut(s)	495, 801, 1326
Bme18I	GGWCC	4 cut(s)	29, 239, 754, 866
BmeRI	GACNNNNNGTC	2 cut(s)	10, 1225
BmeT110I	CYCGRG	3 cut(s)	51, 248, 882
BmgT120I	GGNCC	8 cut(s)	29, 55, 216, 239, 754, 866, 1310, 1485
BmiI	GGNNCC	3 cut(s)	56, 240, 1161
BmrFI	CCNGG	3 cut(s)	495, 801, 1326
BmsI	GCATC	4 cut(s)	821, 982, 1030, 1394
BoxI	GACNNNNGTC	1 cut(s)	1403
BpmI	CTGGAG	3 cut(s)	516, 735, 783
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	3 cut(s)	98, 814, 1532
BpuMI	CCSGG	1 cut(s)	1326
BsaAI	YACGTR	1 cut(s)	998
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	4 cut(s)	72, 613, 881, 1394
BsaXI	ACNNNNNCTCC	4 cut(s)	862, 892, 1453, 1483
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	4 cut(s)	32, 194, 655, 1438
Bse3DI	GCAATG	2 cut(s)	690, 1448
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	2 cut(s)	495, 801
BseDI	CCNNGG	4 cut(s)	72, 613, 881, 1394
BseGI	GGATG	6 cut(s)	177, 490, 586, 847, 997, 1258
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	2 cut(s)	690, 1448
BseMII	CTCAG	6 cut(s)	23, 170, 257, 328, 449, 687
BseNI	ACTGG	4 cut(s)	32, 194, 655, 1438
BseRI	GAGGAG	2 cut(s)	870, 1508
BseSI	GKGCMC	2 cut(s)	1353, 1448
BseXI	GCAGC	7 cut(s)	28, 31, 136, 406, 776, 797, 1202
BseYI	CCCAGC	1 cut(s)	1346
Bsh1236I	CGCG	2 cut(s)	631, 1119
BshFI	GGCC	6 cut(s)	57, 217, 545, 1311, 1329, 1486
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	3 cut(s)	51, 248, 882
BsiSI	CCGG	3 cut(s)	58, 232, 1326
BslFI	GGGAC	5 cut(s)	151, 158, 350, 1370, 1510
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	4 cut(s)	41, 284, 801, 1417
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	5 cut(s)	151, 158, 350, 1370, 1510
BsmI	GAATGC	2 cut(s)	747, 1387
BsnI	GGCC	6 cut(s)	57, 217, 545, 1311, 1329, 1486
BsoBI	CYCGRG	3 cut(s)	51, 248, 882
Bsp1286I	GDGCHC	4 cut(s)	702, 711, 1353, 1448
Bsp143I	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
Bsp19I	CCATGG	1 cut(s)	1394
BspACI	CCGC	4 cut(s)	329, 417, 454, 1437
BspANI	GGCC	6 cut(s)	57, 217, 545, 1311, 1329, 1486
BspCNI	CTCAG	6 cut(s)	22, 169, 256, 327, 448, 688
BspFNI	CGCG	2 cut(s)	631, 1119
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	3 cut(s)	56, 240, 1161
BspMAI	CTGCAG	2 cut(s)	424, 1249
BspPI	GGATC	3 cut(s)	773, 811, 1385
BsrBI	CCGCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	690, 1448
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	4 cut(s)	32, 194, 655, 1438
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	72, 613, 881, 1394
BssMI	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
BssT1I	CCWWGG	3 cut(s)	72, 613, 1394
Bst2UI	CCWGG	2 cut(s)	495, 801
Bst4CI	ACNGT	9 cut(s)	139, 560, 602, 733, 874, 913, 1055, 1402, 1424
Bst6I	CTCTTC	2 cut(s)	72, 1485
BstAPI	GCANNNNNTGC	2 cut(s)	305, 674
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	9 cut(s)	24, 105, 195, 255, 275, 297, 301, 454, 1344
BstDEI	CTNAG	7 cut(s)	9, 156, 243, 314, 435, 534, 696
BstDSI	CCRYGG	1 cut(s)	1394
BstF5I	GGATG	6 cut(s)	177, 490, 586, 847, 997, 1258
BstFNI	CGCG	2 cut(s)	631, 1119
BstKTI	GATC	6 cut(s)	781, 806, 1129, 1393, 1474, 1479
BstMAI	GTCTC	4 cut(s)	41, 284, 801, 1417
BstMBI	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
BstMWI	GCNNNNNNNGC	7 cut(s)	109, 305, 674, 706, 1040, 1348, 1443
BstNI	CCWGG	2 cut(s)	495, 801
BstNSI	RCATGY	1 cut(s)	1346
BstPAI	GACNNNNGTC	1 cut(s)	1403
BstSCI	CCNGG	3 cut(s)	493, 799, 1324
BstSFI	CTRYAG	4 cut(s)	420, 955, 1245, 1480
BstSLI	GKGCMC	2 cut(s)	1353, 1448
BstUI	CGCG	2 cut(s)	631, 1119
BstV1I	GCAGC	7 cut(s)	28, 31, 136, 406, 776, 797, 1202
BstX2I	RGATCY	1 cut(s)	803
BstXI	CCANNNNNNTGG	1 cut(s)	1346
BstYI	RGATCY	1 cut(s)	803
BsuI	GTATCC	1 cut(s)	901
BsuRI	GGCC	6 cut(s)	57, 217, 545, 1311, 1329, 1486
BtgI	CCRYGG	1 cut(s)	1394
BtsCI	GGATG	6 cut(s)	177, 490, 586, 847, 997, 1258
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	8 cut(s)	39, 164, 367, 738, 774, 1051, 1214, 1414
Cac8I	GCNNGC	9 cut(s)	24, 105, 195, 255, 275, 297, 301, 454, 1344
CaiI	CAGNNNCTG	2 cut(s)	806, 1193
CciI	TCATGA	1 cut(s)	1036
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	8 cut(s)	29, 55, 216, 239, 754, 866, 1310, 1485
CseI	GACGC	3 cut(s)	14, 266, 620
Csp6I	GTAC	5 cut(s)	151, 475, 1115, 1431, 1542
CviAII	CATG	6 cut(s)	605, 902, 1037, 1343, 1395, 1529
CviQI	GTAC	5 cut(s)	151, 475, 1115, 1431, 1542
DdeI	CTNAG	7 cut(s)	9, 156, 243, 314, 435, 534, 696
DpnI	GATC	6 cut(s)	780, 805, 1128, 1392, 1473, 1478
DpnII	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
DraI	TTTAAA	2 cut(s)	1171, 1263
DraIII	CACNNNGTG	1 cut(s)	159
DriI	GACNNNNNGTC	2 cut(s)	10, 1225
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	72, 1485
Eam1105I	GACNNNNNGTC	2 cut(s)	10, 1225
EarI	CTCTTC	2 cut(s)	72, 1485
EciI	GGCGGA	1 cut(s)	1452
Eco130I	CCWWGG	3 cut(s)	72, 613, 1394
Eco24I	GRGCYC	1 cut(s)	702
Eco47I	GGWCC	4 cut(s)	29, 239, 754, 866
Eco72I	CACGTG	1 cut(s)	998
Eco88I	CYCGRG	3 cut(s)	51, 248, 882
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	493, 799
EcoT14I	CCWWGG	3 cut(s)	72, 613, 1394
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	3 cut(s)	72, 613, 1394
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	6 cut(s)	608, 905, 1040, 1346, 1398, 1532
FaqI	GGGAC	5 cut(s)	151, 158, 350, 1370, 1510
FatI	CATG	6 cut(s)	604, 901, 1036, 1342, 1394, 1528
FauI	CCCGC	2 cut(s)	336, 461
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	8 cut(s)	17, 20, 125, 417, 420, 765, 786, 1191
FokI	GGATG	6 cut(s)	164, 477, 593, 854, 1004, 1265
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	8 cut(s)	17, 20, 125, 417, 420, 765, 786, 1191
FspBI	CTAG	4 cut(s)	408, 614, 939, 1008
GluI	GCNGC	8 cut(s)	17, 20, 125, 417, 420, 765, 786, 1191
GsaI	CCCAGC	1 cut(s)	1350
GsuI	CTGGAG	3 cut(s)	516, 735, 783
HaeIII	GGCC	6 cut(s)	57, 217, 545, 1311, 1329, 1486
HapII	CCGG	3 cut(s)	58, 232, 1326
HgaI	GACGC	3 cut(s)	14, 266, 620
Hin1II	CATG	6 cut(s)	608, 905, 1040, 1346, 1398, 1532
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	7 cut(s)	49, 268, 510, 888, 971, 1066, 1135
HpaII	CCGG	3 cut(s)	58, 232, 1326
HphI	GGTGA	2 cut(s)	450, 977
Hpy166II	GTNNAC	5 cut(s)	142, 153, 505, 944, 1051
Hpy188I	TCNGA	7 cut(s)	292, 515, 1134, 1147, 1390, 1417, 1476
Hpy188III	TCNNGA	8 cut(s)	115, 563, 635, 659, 714, 752, 1037, 1217
Hpy8I	GTNNAC	5 cut(s)	142, 153, 505, 944, 1051
Hpy99I	CGWCG	2 cut(s)	146, 1134
HpyAV	CCTTC	5 cut(s)	37, 79, 715, 1015, 1276
HpyCH4III	ACNGT	9 cut(s)	139, 560, 602, 733, 874, 913, 1055, 1402, 1424
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	9 cut(s)	386, 422, 668, 683, 812, 995, 1247, 1385, 1453
HpyF10VI	GCNNNNNNNGC	7 cut(s)	109, 305, 674, 706, 1040, 1348, 1443
HpyF3I	CTNAG	7 cut(s)	9, 156, 243, 314, 435, 534, 696
HpySE526I	ACGT	1 cut(s)	997
Hsp92II	CATG	6 cut(s)	608, 905, 1040, 1346, 1398, 1532
Kzo9I	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
LmnI	GCTCC	4 cut(s)	617, 744, 883, 1294
Lsp1109I	GCAGC	7 cut(s)	28, 31, 136, 406, 776, 797, 1202
LweI	GCATC	4 cut(s)	821, 982, 1030, 1394
MaeI	CTAG	4 cut(s)	408, 614, 939, 1008
MaeII	ACGT	1 cut(s)	997
MalI	GATC	6 cut(s)	780, 805, 1128, 1392, 1473, 1478
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
MboII	GAAGA	7 cut(s)	49, 52, 89, 94, 481, 929, 1502
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	4 cut(s)	702, 711, 1353, 1448
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	4 cut(s)	388, 573, 1108, 1172
MluI	ACGCGT	1 cut(s)	1117
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	716, 1112
Mox20I	TGGCCA	1 cut(s)	545
Mph1103I	ATGCAT	1 cut(s)	1387
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	3 cut(s)	822, 1170, 1262
MslI	CAYNNNNRTG	1 cut(s)	1380
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	419, 1193
MspI	CCGG	3 cut(s)	58, 232, 1326
MspR9I	CCNGG	3 cut(s)	495, 801, 1326
Mva1269I	GAATGC	2 cut(s)	747, 1387
MvaI	CCWGG	2 cut(s)	495, 801
MvnI	CGCG	2 cut(s)	631, 1119
MwoI	GCNNNNNNNGC	7 cut(s)	109, 305, 674, 706, 1040, 1348, 1443
NciI	CCSGG	1 cut(s)	1326
NcoI	CCATGG	1 cut(s)	1394
NdeII	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
NlaIII	CATG	6 cut(s)	608, 905, 1040, 1346, 1398, 1532
NlaIV	GGNNCC	3 cut(s)	56, 240, 1161
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	1 cut(s)	1346
PaeI	GCATGC	1 cut(s)	1346
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	1036
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	2 cut(s)	747, 1387
PfeI	GAWTC	6 cut(s)	268, 510, 888, 971, 1066, 1135
PflMI	CCANNNNNTGG	1 cut(s)	806
PfoI	TCCNGGA	2 cut(s)	493, 799
PkrI	GCNGC	8 cut(s)	18, 21, 126, 418, 421, 766, 787, 1192
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	998
PmlI	CACGTG	1 cut(s)	998
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	998
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	1403
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	493, 799
PspCI	CACGTG	1 cut(s)	998
PspFI	CCCAGC	1 cut(s)	1346
PspGI	CCWGG	2 cut(s)	493, 799
PspN4I	GGNNCC	3 cut(s)	56, 240, 1161
PspPI	GGNCC	8 cut(s)	29, 55, 216, 239, 754, 866, 1310, 1485
PspPPI	RGGWCCY	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	424, 1249
PstNI	CAGNNNCTG	2 cut(s)	806, 1193
PsuI	RGATCY	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	1193
RsaI	GTAC	5 cut(s)	152, 476, 1116, 1432, 1543
RsaNI	GTAC	5 cut(s)	151, 475, 1115, 1431, 1542
RseI	CAYNNNNRTG	1 cut(s)	1380
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	822, 1170, 1262
SatI	GCNGC	8 cut(s)	17, 20, 125, 417, 420, 765, 786, 1191
Sau3AI	GATC	6 cut(s)	778, 803, 1126, 1390, 1471, 1476
Sau96I	GGNCC	8 cut(s)	29, 55, 216, 239, 754, 866, 1310, 1485
ScaI	AGTACT	1 cut(s)	1432
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	495, 801, 1326
SduI	GDGCHC	4 cut(s)	702, 711, 1353, 1448
SfaNI	GCATC	4 cut(s)	821, 982, 1030, 1394
SfcI	CTRYAG	4 cut(s)	420, 955, 1245, 1480
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	4 cut(s)	29, 239, 754, 866
SlaI	CTCGAG	1 cut(s)	248
SmiI	ATTTAAAT	1 cut(s)	1171
SmiMI	CAYNNNNRTG	1 cut(s)	1380
SmlI	CTYRAG	4 cut(s)	113, 248, 829, 1511
SmoI	CTYRAG	4 cut(s)	113, 248, 829, 1511
SphI	GCATGC	1 cut(s)	1346
Sse9I	AATT	4 cut(s)	388, 573, 1108, 1172
SsiI	CCGC	4 cut(s)	329, 417, 454, 1437
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	4 cut(s)	408, 614, 939, 1008
StyD4I	CCNGG	3 cut(s)	493, 799, 1324
StyI	CCWWGG	3 cut(s)	72, 613, 1394
SwaI	ATTTAAAT	1 cut(s)	1171
TaaI	ACNGT	9 cut(s)	139, 560, 602, 733, 874, 913, 1055, 1402, 1424
TaiI	ACGT	1 cut(s)	1000
TaqI	TCGA	4 cut(s)	141, 249, 585, 915
TasI	AATT	4 cut(s)	388, 573, 1108, 1172
TatI	WGTACW	4 cut(s)	150, 474, 1430, 1541
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	6 cut(s)	268, 510, 888, 971, 1066, 1135
Tru1I	TTAA	3 cut(s)	822, 1170, 1262
Tru9I	TTAA	3 cut(s)	822, 1170, 1262
TscAI	CASTG	8 cut(s)	39, 164, 367, 738, 781, 1058, 1214, 1414
TseI	GCWGC	7 cut(s)	16, 19, 124, 419, 764, 785, 1190
TspDTI	ATGAA	2 cut(s)	479, 1364
TspRI	CASTG	8 cut(s)	39, 164, 367, 738, 781, 1058, 1214, 1414
Van91I	CCANNNNNTGG	1 cut(s)	806
VpaK11BI	GGWCC	4 cut(s)	29, 239, 754, 866
XapI	RAATTY	1 cut(s)	1172
XceI	RCATGY	1 cut(s)	1346
XhoI	CTCGAG	1 cut(s)	248
XmaJI	CCTAGG	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	4 cut(s)	408, 614, 939, 1008
ZrmI	AGTACT	1 cut(s)	1432
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.