pycom09g11000

WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
9154614 .. 9160264
5651 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11000.5

Sequence Viewer

Length: 1305 bp
ATGAAAGGGAAAGCTACGGAGGCGTCGGTGAACGATCGATACACGCAGTGGAAGTCGCTGGTGCCAGTGCTCTACGACTGGCTCGCCAATCACAACCTTGTTTGGCCTTCTCTCTCTTGCAGATGGGGACCGCAGCTGGAGCAAGCCACTTACAAGAGTCGTCAGCGCCTTTTTCTTTCGGAACAGACTGATGGCAGTGTTCCAAATACACTTGTCATTGCAAACTGTGAAGTTGTCAAACCCAGGGTTGCAGCTGCCGAGCACATATCACAGGTGAACAGAATCAGGGAACTCCCTCAGAATAGTAAGATAGTGGCAACACACACTGACAGTCCTGATGTTCTCATTTGGGATATTGAGGCTCAACCTAATCGCCATGCTGTTCTGGGAGCTTCAGATTCTCGTCCAGATCTGCTATTGATAGGGCATCGAGATAATGCTGAATTTGCTCTTGCCATGTGCCCATCTGAACCCTTTGTGCTCTCTGGAGGGAAGGATAAATCAGTGATTTTGTGGAGTATTCATGATCATATCTCATCTTTAGCATCAGAACCAGGATCTGGAGGTGGCAGTGCTAAACATTCTTCTAAGATTGGTGGGAGTAACGATAAACTCAGAGACAGCCCTTCTGTTGAGCCACGGGGTGTCTATAAAGGGCATGAGGATACTGTTGAGGATGTGCAGTTCTGCCCATCTAGTGCACCGGAGTTCTGTAGTGTAGGTGATGATTCTTGCCTCATACTATGGGATACAAGAGCTGGATCTAGTCCAGCTGTCAAGGTTGACAAAGCTCATGATGCTGACCTTCATTGCGTTGATTGGAATCCACATGACGTCAATCTCATACTTACAGGGTCTGCCGATAATACTATTCGCTTGTTTGACCGCCGATATCTCACTTCTGGAGGAGTTGGATCACCTGTTCATACATTTGAGGGCCACAATGCAGCTGTCCTCTGCGTACAGTGGTCTCCTCACAAGGCATCTGTTTTTGGAAGCTCTGCCGAGGATGGCTTACTAAACATCTGGGATCATGAAAAGGTTGGCAAGAATGGATCAAAGCCGTCAAATGCTCCTCCAGGATTGTTCTTTCGACATGCTGGTCATAGGGACAAGGTTGTTGACTTTCATTGGAATGCGTCTGATCCGTGGACGATAGCTAGTGTCTCTGATGATTGCGGAAGTACCGGAGGTGGTGGTACCCTCCAGATATGGCGGATGATTGATTTGATTTACAGGCCCGAGGAAGAGGTCCTCGCAGAGCTGGATACGTTCAAATCTCACCTAACAACATGCCAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

47.43

Weight (kDa)

5.7

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1101
AatII GACGTC 1 cut(s) 837
Acc65I GGTACC 1 cut(s) 1199
AccB1I GGYRCC 2 cut(s) 61, 1199
AccB7I CCANNNNNTGG 1 cut(s) 560
AciI CCGC 4 cut(s) 131, 886, 1179, 1216
AclWI GGATC 6 cut(s) 565, 769, 922, 1038, 1063, 1139
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 2 cut(s) 23, 834
AdeI CACNNNGTG 2 cut(s) 48, 644
AfaI GTAC 3 cut(s) 963, 1186, 1201
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 1 cut(s) 1276
AjnI CCWGG 4 cut(s) 242, 553, 1078, 1296
AloI GAACNNNNNNTCC 4 cut(s) 668, 700, 906, 938
Alw21I GWGCWC 4 cut(s) 72, 264, 483, 703
Alw26I GTCTC 3 cut(s) 612, 975, 1171
Alw44I GTGCAC 1 cut(s) 699
AlwI GGATC 6 cut(s) 565, 769, 922, 1038, 1063, 1139
AlwNI CAGNNNCTG 2 cut(s) 560, 857
Ama87I CYCGRG 1 cut(s) 1241
AoxI GGCC 3 cut(s) 104, 937, 1238
ApaLI GTGCAC 1 cut(s) 699
ApeKI GCWGC 4 cut(s) 133, 251, 254, 947
ApoI RAATTY 1 cut(s) 443
Asp718I GGTACC 1 cut(s) 1199
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 4 cut(s) 128, 937, 1239, 1252
AsuHPI GGTGA 5 cut(s) 40, 286, 734, 909, 1274
AvaI CYCGRG 1 cut(s) 1241
AvaII GGWCC 2 cut(s) 128, 1252
BaeGI GKGCMC 2 cut(s) 464, 703
BanI GGYRCC 2 cut(s) 61, 1199
Bbv12I GWGCWC 4 cut(s) 72, 264, 483, 703
BbvI GCAGC 4 cut(s) 145, 241, 263, 959
BccI CCATC 5 cut(s) 117, 185, 472, 700, 1004
BceAI ACGGC 1 cut(s) 1048
BciT130I CCWGG 4 cut(s) 244, 555, 1080, 1298
BciVI GTATCC 3 cut(s) 658, 742, 1261
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 3 cut(s) 612, 975, 1171
BfaI CTAG 3 cut(s) 696, 765, 1161
BfmI CTRYAG 1 cut(s) 712
BfoI RGCGCY 1 cut(s) 169
BfuI GTATCC 3 cut(s) 658, 742, 1261
BglII AGATCT 1 cut(s) 409
BisI GCNGC 4 cut(s) 134, 252, 255, 948
BlsI GCNGC 4 cut(s) 135, 253, 256, 949
Bme1390I CCNGG 4 cut(s) 244, 555, 1080, 1298
Bme18I GGWCC 2 cut(s) 128, 1252
BmeT110I CYCGRG 1 cut(s) 1241
BmgT120I GGNCC 4 cut(s) 128, 937, 1239, 1252
BmiI GGNNCC 3 cut(s) 63, 129, 1201
BmrFI CCNGG 4 cut(s) 244, 555, 1080, 1298
BmsI GCATC 4 cut(s) 436, 554, 787, 992
BpmI CTGGAG 6 cut(s) 158, 507, 582, 924, 1062, 1190
Bsa29I ATCGAT 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 822
BsaHI GRCGYC 2 cut(s) 23, 834
BsaI GGTCTC 1 cut(s) 975
BsaJI CCNNGG 6 cut(s) 242, 243, 638, 1005, 1148, 1242
BsaWI WCCGGW 2 cut(s) 703, 1187
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 65, 83
Bse3DI GCAATG 2 cut(s) 216, 808
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 4 cut(s) 244, 555, 1080, 1298
BseCI ATCGAT 1 cut(s) 37
BseDI CCNNGG 6 cut(s) 242, 243, 638, 1005, 1148, 1242
BseGI GGATG 3 cut(s) 682, 1015, 1224
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMI GCAATG 2 cut(s) 216, 808
BseMII CTCAG 2 cut(s) 311, 628
BseNI ACTGG 2 cut(s) 65, 83
BseRI GAGGAG 3 cut(s) 921, 963, 1065
BseSI GKGCMC 2 cut(s) 464, 703
BseXI GCAGC 4 cut(s) 145, 241, 263, 959
BsgI GTGCAG 1 cut(s) 701
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 3 cut(s) 106, 939, 1240
BshNI GGYRCC 2 cut(s) 61, 1199
BshVI ATCGAT 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 4 cut(s) 72, 264, 483, 703
BsiHKCI CYCGRG 1 cut(s) 1241
BsiSI CCGG 2 cut(s) 704, 1188
BslFI GGGAC 2 cut(s) 141, 1124
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 3 cut(s) 612, 975, 1171
BsmFI GGGAC 2 cut(s) 141, 1124
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 3 cut(s) 106, 939, 1240
Bso31I GGTCTC 1 cut(s) 975
BsoBI CYCGRG 1 cut(s) 1241
Bsp1286I GDGCHC 5 cut(s) 72, 264, 464, 483, 703
Bsp143I GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
BspACI CCGC 4 cut(s) 131, 886, 1179, 1216
BspANI GGCC 3 cut(s) 106, 939, 1240
BspCNI CTCAG 2 cut(s) 310, 627
BspDI ATCGAT 1 cut(s) 37
BspHI TCATGA 3 cut(s) 523, 793, 1033
BspLI GGNNCC 3 cut(s) 63, 129, 1201
BspPI GGATC 6 cut(s) 565, 769, 922, 1038, 1063, 1139
BspT107I GGYRCC 2 cut(s) 61, 1199
BspTNI GGTCTC 1 cut(s) 975
BsrDI GCAATG 2 cut(s) 216, 808
BsrI ACTGG 2 cut(s) 65, 83
BssECI CCNNGG 6 cut(s) 242, 243, 638, 1005, 1148, 1242
BssMI GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
BssNI GRCGYC 2 cut(s) 23, 834
Bst2UI CCWGG 4 cut(s) 244, 555, 1080, 1298
Bst4CI ACNGT 4 cut(s) 227, 332, 670, 966
Bst6I CTCTTC 1 cut(s) 1242
BstACI GRCGYC 2 cut(s) 23, 834
BstC8I GCNNGC 2 cut(s) 84, 144
BstDEI CTNAG 3 cut(s) 297, 588, 614
BstDSI CCRYGG 2 cut(s) 638, 1148
BstF5I GGATG 3 cut(s) 682, 1015, 1224
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 9 cut(s) 37, 412, 529, 560, 764, 917, 1033, 1058, 1147
BstMAI GTCTC 3 cut(s) 612, 975, 1171
BstMBI GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 4 cut(s) 20, 139, 446, 797
BstNI CCWGG 4 cut(s) 244, 555, 1080, 1298
BstNSI RCATGY 2 cut(s) 1100, 1296
BstSCI CCNGG 4 cut(s) 242, 553, 1078, 1296
BstSFI CTRYAG 1 cut(s) 712
BstSLI GKGCMC 2 cut(s) 464, 703
BstV1I GCAGC 4 cut(s) 145, 241, 263, 959
BstX2I RGATCY 3 cut(s) 409, 557, 761
BstYI RGATCY 3 cut(s) 409, 557, 761
Bsu15I ATCGAT 1 cut(s) 37
BsuI GTATCC 3 cut(s) 658, 742, 1261
BsuRI GGCC 3 cut(s) 106, 939, 1240
BsuTUI ATCGAT 1 cut(s) 37
BtgI CCRYGG 2 cut(s) 638, 1148
BtsCI GGATG 3 cut(s) 682, 1015, 1224
BtsI GCAGTG 3 cut(s) 53, 202, 577
BtsIMutI CAGTG 7 cut(s) 53, 72, 202, 324, 510, 577, 971
Cac8I GCNNGC 2 cut(s) 84, 144
CaiI CAGNNNCTG 2 cut(s) 560, 857
CciI TCATGA 3 cut(s) 523, 793, 1033
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 4 cut(s) 128, 937, 1239, 1252
ClaI ATCGAT 1 cut(s) 37
CseI GACGC 2 cut(s) 12, 1128
Csp6I GTAC 3 cut(s) 962, 1185, 1200
CviAII CATG 9 cut(s) 377, 457, 524, 659, 794, 830, 1034, 1097, 1293
CviQI GTAC 3 cut(s) 962, 1185, 1200
DdeI CTNAG 3 cut(s) 297, 588, 614
DpnI GATC 9 cut(s) 36, 411, 528, 559, 763, 916, 1032, 1057, 1146
DpnII GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
DraIII CACNNNGTG 2 cut(s) 48, 644
DrdI GACNNNNNNGTC 1 cut(s) 1101
DseDI GACNNNNNNGTC 1 cut(s) 1101
Eam1104I CTCTTC 1 cut(s) 1242
EarI CTCTTC 1 cut(s) 1242
EciI GGCGGA 1 cut(s) 1231
Eco31I GGTCTC 1 cut(s) 975
Eco32I GATATC 1 cut(s) 893
Eco47I GGWCC 2 cut(s) 128, 1252
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 1241
EcoO109I RGGNCCY 1 cut(s) 1252
EcoRII CCWGG 4 cut(s) 242, 553, 1078, 1296
EcoRV GATATC 1 cut(s) 893
FaeI CATG 9 cut(s) 380, 460, 527, 662, 797, 833, 1037, 1100, 1296
FaqI GGGAC 2 cut(s) 141, 1124
FatI CATG 9 cut(s) 376, 456, 523, 658, 793, 829, 1033, 1096, 1292
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 4 cut(s) 134, 252, 255, 948
FokI GGATG 3 cut(s) 689, 1022, 1231
Fsp4HI GCNGC 4 cut(s) 134, 252, 255, 948
FspBI CTAG 3 cut(s) 696, 765, 1161
GlaI GCGC 1 cut(s) 167
GluI GCNGC 4 cut(s) 134, 252, 255, 948
GsuI CTGGAG 6 cut(s) 158, 507, 582, 924, 1062, 1190
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 3 cut(s) 106, 939, 1240
HapII CCGG 2 cut(s) 704, 1188
HgaI GACGC 2 cut(s) 12, 1128
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 2 cut(s) 23, 834
Hin1II CATG 9 cut(s) 380, 460, 527, 662, 797, 833, 1037, 1100, 1296
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 2 cut(s) 784, 1123
HindII GTYRAC 2 cut(s) 784, 1123
HinfI GANTC 5 cut(s) 157, 282, 398, 728, 823
HpaII CCGG 2 cut(s) 704, 1188
HphI GGTGA 5 cut(s) 40, 286, 734, 909, 1274
Hpy166II GTNNAC 6 cut(s) 31, 277, 701, 784, 1123, 1152
Hpy188I TCNGA 8 cut(s) 181, 300, 397, 469, 550, 617, 1144, 1171
Hpy8I GTNNAC 6 cut(s) 31, 277, 701, 784, 1123, 1152
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 4 cut(s) 117, 487, 636, 815
HpyCH4III ACNGT 4 cut(s) 227, 332, 670, 966
HpyCH4IV ACGT 2 cut(s) 834, 1271
HpyCH4V TGCA 6 cut(s) 120, 221, 251, 682, 701, 947
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 139, 446, 797
HpyF3I CTNAG 3 cut(s) 297, 588, 614
HpySE526I ACGT 2 cut(s) 834, 1271
Hsp92I GRCGYC 2 cut(s) 23, 834
Hsp92II CATG 9 cut(s) 380, 460, 527, 662, 797, 833, 1037, 1100, 1296
HspAI GCGC 1 cut(s) 166
KpnI GGTACC 1 cut(s) 1203
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
LmnI GCTCC 3 cut(s) 139, 389, 1078
Lsp1109I GCAGC 4 cut(s) 145, 241, 263, 959
LweI GCATC 4 cut(s) 436, 554, 787, 992
MaeI CTAG 3 cut(s) 696, 765, 1161
MaeII ACGT 2 cut(s) 834, 1271
MaeIII GTNAC 1 cut(s) 602
MalI GATC 9 cut(s) 36, 411, 528, 559, 763, 916, 1032, 1057, 1146
MboI GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
MboII GAAGA 2 cut(s) 576, 1259
MflI RGATCY 3 cut(s) 409, 557, 761
MhlI GDGCHC 5 cut(s) 72, 264, 464, 483, 703
MluCI AATT 1 cut(s) 443
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 892
MslI CAYNNNNRTG 1 cut(s) 1134
MspA1I CMGCKG 4 cut(s) 136, 254, 773, 950
MspI CCGG 2 cut(s) 704, 1188
MspR9I CCNGG 4 cut(s) 244, 555, 1080, 1298
Mva1269I GAATGC 1 cut(s) 1141
MvaI CCWGG 4 cut(s) 244, 555, 1080, 1298
MwoI GCNNNNNNNGC 4 cut(s) 20, 139, 446, 797
NdeII GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
NlaIII CATG 9 cut(s) 380, 460, 527, 662, 797, 833, 1037, 1100, 1296
NlaIV GGNNCC 3 cut(s) 63, 129, 1201
NmeAIII GCCGAG 2 cut(s) 283, 1030
NspI RCATGY 2 cut(s) 1100, 1296
PagI TCATGA 3 cut(s) 523, 793, 1033
PasI CCCWGGG 1 cut(s) 243
PctI GAATGC 1 cut(s) 1141
PfeI GAWTC 4 cut(s) 282, 398, 728, 823
PflMI CCANNNNNTGG 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 1078
PkrI GCNGC 4 cut(s) 135, 253, 256, 949
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 1252
Psp5II RGGWCCY 1 cut(s) 1252
Psp6I CCWGG 4 cut(s) 242, 553, 1078, 1296
PspGI CCWGG 4 cut(s) 242, 553, 1078, 1296
PspN4I GGNNCC 3 cut(s) 63, 129, 1201
PspPI GGNCC 4 cut(s) 128, 937, 1239, 1252
PspPPI RGGWCCY 1 cut(s) 1252
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 2 cut(s) 560, 857
PsuI RGATCY 3 cut(s) 409, 557, 761
PvuI CGATCG 1 cut(s) 37
PvuII CAGCTG 4 cut(s) 136, 254, 773, 950
RsaI GTAC 3 cut(s) 963, 1186, 1201
RsaNI GTAC 3 cut(s) 962, 1185, 1200
RseI CAYNNNNRTG 1 cut(s) 1134
SatI GCNGC 4 cut(s) 134, 252, 255, 948
Sau3AI GATC 9 cut(s) 34, 409, 526, 557, 761, 914, 1030, 1055, 1144
Sau96I GGNCC 4 cut(s) 128, 937, 1239, 1252
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 4 cut(s) 244, 555, 1080, 1298
SduI GDGCHC 5 cut(s) 72, 264, 464, 483, 703
SfaNI GCATC 4 cut(s) 436, 554, 787, 992
SfcI CTRYAG 1 cut(s) 712
SinI GGWCC 2 cut(s) 128, 1252
SmiMI CAYNNNNRTG 1 cut(s) 1134
Sse9I AATT 1 cut(s) 443
SsiI CCGC 4 cut(s) 131, 886, 1179, 1216
SspMI CTAG 3 cut(s) 696, 765, 1161
StyD4I CCNGG 4 cut(s) 242, 553, 1078, 1296
TaaI ACNGT 4 cut(s) 227, 332, 670, 966
TaiI ACGT 2 cut(s) 837, 1274
TaqI TCGA 3 cut(s) 37, 430, 1093
TasI AATT 1 cut(s) 443
TfiI GAWTC 4 cut(s) 282, 398, 728, 823
TscAI CASTG 7 cut(s) 53, 72, 202, 331, 510, 577, 971
TseI GCWGC 4 cut(s) 133, 251, 254, 947
TspDTI ATGAA 6 cut(s) 17, 512, 797, 914, 1050, 1118
TspGWI ACGGA 2 cut(s) 32, 1137
TspRI CASTG 7 cut(s) 53, 72, 202, 331, 510, 577, 971
Van91I CCANNNNNTGG 1 cut(s) 560
VneI GTGCAC 1 cut(s) 699
VpaK11BI GGWCC 2 cut(s) 128, 1252
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 1100, 1296
XspI CTAG 3 cut(s) 696, 765, 1161
ZraI GACGTC 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.