Rroxscaffold_2G00102060

Histone-binding protein RBBP4 or subunit C of CAF1 complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003346
Physical Location & Seq
Forward (+)
24093163 .. 24099628
6466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102060.1

Sequence Viewer

Length: 1305 bp
ATGAAAGGCAAAGTTACGGAGCCGTCGGTGAACGACCGTTACACGCAGTGGAAGTCGCTGGTGCCTGTGCTCTACGACTGGCTCGCCAACCACAATCTCACCGATGGAAGTGTTCCAAATACCCTTGTCATTGCAAACTGTGAAGTTGTCAAACCTAGGGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCTCCTTTTGTAAAGAAGTATAAAACTATAATACATCCTGGAGAGGTGAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTGGCCACACACACTGACAGTCCTGATGTTCTCATTTGGGACATTGAGGCTCAACCTAATCGTCATGCTGTCCTGGGAGCTACAAATTCTCGCCCAGATCTGCTATTGACTGGACATCAAGATAATGCTGAATTTGCACTTGCTATGTGCCCCTCAGAACCCTTTGTACTCTCTGGAGGTCGGAAAGTTTCTTGGAAGGACAAGTCAGTGATTTTGTGGAGTATTCAAGATCATATCTCGTCTTTGGCATCAGATCCTGGGTCTGCAAGGTCTCCAGGATCCAGTGGTTCAAATGCTAAACATGCCTCTAAGGTTGGTGGGAGTAATGAAAAACCCACAGACAGCCCTTCTGTTGAGCCACGAGGTATCTATCAAGGGCATGAGGATACTGTTGAAGATGTACAGTTCTGCCCATCTAGTGCACAGGAGTTTTGCAGTGTGGGCGATGATTCTTGCCTCATACTATGGGATGCTAGATCTGGCAATAGTCCAGTTGTCAAGGTTGAAAAAGCTCATGATGCTGACCTTCATTGTGTAGATTGGAATCCTCATGATGTCAATCTCATTCTTACAGGGTCTGCCGATAAGACTGTTCGTATGTTTGACCGCCGGAATCTCACTTCTGGAGGAGTTGGATCACCCATTCATAAGTTTGAGGGCCACAATGAAGCTGTTCTCTGTGTTCAGTGGTCTCCTGACAAGTCCTCTGTCTTTGGAAGTTCTGCTGAGGATGGCCTATTGAACATCTGGGATCATGAAAAGATTGGTAAGAAGCAAGAATCTGTTGGATCAAAGCTGCCAAATGCTCCTCCTGCAGGATTGGACAAGGTTGTTGATTTTCATTGGAATACATCTGATCCCTGGACAATAGTAAGTGTTTCTGATGATTGTGGAAGTACTGGAGGAGGCGGTACACTCCAGATATGGCGAATGATTGATTTGATTTACAGGCCTGAGGAAGAGGTGCTGGCCGAGCTTGACAAGTTCAAATCTCACGTGTTGACATGCCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

434

Amino Acids

47.42

Weight (kDa)

5.49

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 211 - 351 5.4e-10 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 213 - 299 8.9e-09 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 220 - 259 7.1e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 220 - 350 2.7e-20 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 221 - 300 8.5e-06 WDR3 second beta-propeller domain
WDR55 PF24796 221 - 350 5.2e-08 WDR55
Beta-prop_EIPR1 PF23609 223 - 297 8.8e-10 EIPR1 beta-propeller
Beta-prop_EML_2 PF23414 236 - 356 3.6e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 242 - 348 9.5e-10 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 266 - 350 1.4e-10 Prp19 WD40 domain
Beta-prop_EIPR1 PF23609 267 - 349 2.9e-06 EIPR1 beta-propeller
Beta-prop_THOC3 PF25174 268 - 358 6.3e-13 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 270 - 351 1.4e-06 WDHD1 first WD40 domain
WD40 PF00400 308 - 347 1.5e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 2 cut(s) 895, 1197
AclWI GGATC 7 cut(s) 536, 561, 574, 931, 1047, 1084, 1139
AcoI YGGCCR 2 cut(s) 291, 1257
AcsI RAATTY 2 cut(s) 373, 419
AcvI CACGTG 1 cut(s) 1285
AdeI CACNNNGTG 1 cut(s) 48
AfaI GTAC 4 cut(s) 456, 690, 1186, 1201
AfiI CCNNNNNNNGG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 1284
AgsI TTSAA 7 cut(s) 190, 515, 579, 683, 794, 1030, 1276
AjnI CCWGG 5 cut(s) 241, 360, 544, 562, 1148
AluBI AGCT 6 cut(s) 167, 368, 800, 959, 1084, 1264
AluI AGCT 6 cut(s) 167, 368, 800, 959, 1084, 1264
Alw21I GWGCWC 3 cut(s) 72, 177, 712
Alw26I GTCTC 2 cut(s) 564, 984
Alw44I GTGCAC 1 cut(s) 708
AlwI GGATC 7 cut(s) 536, 561, 574, 931, 1047, 1084, 1139
AlwNI CAGNNNCTG 2 cut(s) 545, 866
AoxI GGCC 5 cut(s) 291, 946, 1021, 1238, 1257
ApaLI GTGCAC 1 cut(s) 708
ApeKI GCWGC 3 cut(s) 164, 167, 1084
ApoI RAATTY 2 cut(s) 373, 419
Asp700I GAANNNNTTC 1 cut(s) 960
AspA2I CCTAGG 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 946
AsuHPI GGTGA 4 cut(s) 40, 91, 262, 918
AvrII CCTAGG 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 1242
BaeGI GKGCMC 2 cut(s) 440, 712
BalI TGGCCA 1 cut(s) 293
BamHI GGATCC 1 cut(s) 566
BanI GGYRCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 648
BbrPI CACGTG 1 cut(s) 1285
Bbv12I GWGCWC 3 cut(s) 72, 177, 712
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 3 cut(s) 154, 176, 1071
BccI CCATC 3 cut(s) 98, 709, 1013
BceAI ACGGC 1 cut(s) 7
BciT130I CCWGG 5 cut(s) 243, 362, 546, 564, 1150
BciVI GTATCC 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 564, 984
BfaI CTAG 3 cut(s) 156, 705, 762
BfmI CTRYAG 2 cut(s) 168, 1101
BfuI GTATCC 1 cut(s) 667
BglII AGATCT 2 cut(s) 385, 764
BisI GCNGC 3 cut(s) 165, 168, 1085
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 3 cut(s) 166, 169, 1086
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 5 cut(s) 243, 362, 546, 564, 1150
BmgT120I GGNCC 1 cut(s) 946
BmiI GGNNCC 3 cut(s) 21, 63, 568
BmrFI CCNGG 5 cut(s) 243, 362, 546, 564, 1150
BmsI GCATC 3 cut(s) 545, 748, 796
BpmI CTGGAG 6 cut(s) 264, 483, 546, 933, 1190, 1209
Bpu10I CCTNAGC 1 cut(s) 1014
BsaAI YACGTR 1 cut(s) 1285
BsaBI GATNNNNATC 2 cut(s) 831, 846
BsaI GGTCTC 2 cut(s) 564, 984
BsaJI CCNNGG 4 cut(s) 155, 361, 545, 1148
Bsc4I CCNNNNNNNGG 1 cut(s) 1103
Bse1I ACTGG 5 cut(s) 83, 403, 570, 779, 1192
Bse21I CCTNAGG 1 cut(s) 1242
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 2 cut(s) 831, 846
BseBI CCWGG 5 cut(s) 243, 362, 546, 564, 1150
BseDI CCNNGG 4 cut(s) 155, 361, 545, 1148
BseGI GGATG 3 cut(s) 238, 763, 1024
BseJI GATNNNNATC 2 cut(s) 831, 846
BseLI CCNNNNNNNGG 1 cut(s) 1103
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 3 cut(s) 456, 1005, 1233
BseNI ACTGG 5 cut(s) 83, 403, 570, 779, 1192
BseRI GAGGAG 3 cut(s) 930, 1086, 1206
BseSI GKGCMC 2 cut(s) 440, 712
BseXI GCAGC 3 cut(s) 154, 176, 1071
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 5 cut(s) 293, 948, 1023, 1240, 1259
BshNI GGYRCC 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 3 cut(s) 72, 177, 712
BsiSI CCGG 1 cut(s) 898
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 1103
BsmAI GTCTC 2 cut(s) 564, 984
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 5 cut(s) 293, 948, 1023, 1240, 1259
Bso31I GGTCTC 2 cut(s) 564, 984
Bsp1286I GDGCHC 4 cut(s) 72, 177, 440, 712
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
BspACI CCGC 2 cut(s) 895, 1197
BspANI GGCC 5 cut(s) 293, 948, 1023, 1240, 1259
BspCNI CTCAG 3 cut(s) 455, 1006, 1234
BspHI TCATGA 3 cut(s) 802, 838, 1042
BspLI GGNNCC 3 cut(s) 21, 63, 568
BspMAI CTGCAG 2 cut(s) 172, 1105
BspPI GGATC 7 cut(s) 536, 561, 574, 931, 1047, 1084, 1139
BspT107I GGYRCC 1 cut(s) 61
BspTNI GGTCTC 2 cut(s) 564, 984
BsrDI GCAATG 1 cut(s) 129
BsrGI TGTACA 1 cut(s) 688
BsrI ACTGG 5 cut(s) 83, 403, 570, 779, 1192
BssECI CCNNGG 4 cut(s) 155, 361, 545, 1148
BssMI GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 5 cut(s) 243, 362, 546, 564, 1150
Bst4CI ACNGT 7 cut(s) 38, 140, 186, 308, 679, 693, 880
Bst6I CTCTTC 1 cut(s) 1242
BstAUI TGTACA 1 cut(s) 688
BstBAI YACGTR 1 cut(s) 1285
BstC8I GCNNGC 3 cut(s) 84, 202, 1257
BstDEI CTNAG 4 cut(s) 442, 597, 1014, 1242
BstENI CCTNNNNNAGG 1 cut(s) 1101
BstF5I GGATG 3 cut(s) 238, 763, 1024
BstKTI GATC 9 cut(s) 388, 520, 544, 569, 767, 926, 1042, 1079, 1147
BstMAI GTCTC 2 cut(s) 564, 984
BstMBI GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 6 cut(s) 422, 590, 729, 806, 1100, 1261
BstNI CCWGG 5 cut(s) 243, 362, 546, 564, 1150
BstNSI RCATGY 2 cut(s) 593, 1296
BstSCI CCNGG 5 cut(s) 241, 360, 544, 562, 1148
BstSFI CTRYAG 2 cut(s) 168, 1101
BstSLI GKGCMC 2 cut(s) 440, 712
BstV1I GCAGC 3 cut(s) 154, 176, 1071
BstX2I RGATCY 4 cut(s) 385, 541, 566, 764
BstYI RGATCY 4 cut(s) 385, 541, 566, 764
Bsu36I CCTNAGG 1 cut(s) 1242
BsuI GTATCC 1 cut(s) 667
BsuRI GGCC 5 cut(s) 293, 948, 1023, 1240, 1259
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 3 cut(s) 238, 763, 1024
BtsI GCAGTG 2 cut(s) 53, 730
BtsIMutI CAGTG 6 cut(s) 53, 300, 501, 577, 730, 980
Cac8I GCNNGC 3 cut(s) 84, 202, 1257
CaiI CAGNNNCTG 2 cut(s) 545, 866
CciI TCATGA 3 cut(s) 802, 838, 1042
Cfr13I GGNCC 1 cut(s) 946
Csp6I GTAC 4 cut(s) 455, 689, 1185, 1200
CviAII CATG 7 cut(s) 353, 590, 668, 803, 839, 1043, 1293
CviQI GTAC 4 cut(s) 455, 689, 1185, 1200
DdeI CTNAG 4 cut(s) 442, 597, 1014, 1242
DpnI GATC 9 cut(s) 387, 519, 543, 568, 766, 925, 1041, 1078, 1146
DpnII GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
DraIII CACNNNGTG 1 cut(s) 48
EaeI YGGCCR 2 cut(s) 291, 1257
Eam1104I CTCTTC 1 cut(s) 1242
EarI CTCTTC 1 cut(s) 1242
Eco130I CCWWGG 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 1240
Eco31I GGTCTC 2 cut(s) 564, 984
Eco72I CACGTG 1 cut(s) 1285
Eco81I CCTNAGG 1 cut(s) 1242
EcoNI CCTNNNNNAGG 1 cut(s) 1101
EcoRII CCWGG 5 cut(s) 241, 360, 544, 562, 1148
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 7 cut(s) 356, 593, 671, 806, 842, 1046, 1296
FaqI GGGAC 1 cut(s) 341
FatI CATG 7 cut(s) 352, 589, 667, 802, 838, 1042, 1292
Fnu4HI GCNGC 3 cut(s) 165, 168, 1085
FokI GGATG 3 cut(s) 225, 770, 1031
Fsp4HI GCNGC 3 cut(s) 165, 168, 1085
FspBI CTAG 3 cut(s) 156, 705, 762
GluI GCNGC 3 cut(s) 165, 168, 1085
GsuI CTGGAG 6 cut(s) 264, 483, 546, 933, 1190, 1209
HaeIII GGCC 5 cut(s) 293, 948, 1023, 1240, 1259
HapII CCGG 1 cut(s) 898
Hin1II CATG 7 cut(s) 356, 593, 671, 806, 842, 1046, 1296
HincII GTYRAC 1 cut(s) 1290
HindII GTYRAC 1 cut(s) 1290
HinfI GANTC 5 cut(s) 258, 737, 832, 901, 1067
HpaII CCGG 1 cut(s) 898
HphI GGTGA 4 cut(s) 40, 91, 262, 918
Hpy166II GTNNAC 5 cut(s) 31, 253, 710, 1202, 1290
Hpy188I TCNGA 5 cut(s) 445, 471, 541, 1144, 1171
Hpy8I GTNNAC 5 cut(s) 31, 253, 710, 1202, 1290
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 478, 645, 824
HpyCH4III ACNGT 7 cut(s) 38, 140, 186, 308, 679, 693, 880
HpyCH4IV ACGT 1 cut(s) 1284
HpyCH4V TGCA 8 cut(s) 134, 164, 170, 425, 554, 710, 723, 1103
HpyF10VI GCNNNNNNNGC 6 cut(s) 422, 590, 729, 806, 1100, 1261
HpyF3I CTNAG 4 cut(s) 442, 597, 1014, 1242
HpySE526I ACGT 1 cut(s) 1284
Hsp92II CATG 7 cut(s) 356, 593, 671, 806, 842, 1046, 1296
Kzo9I GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
LmnI GCTCC 3 cut(s) 19, 365, 1099
Lsp1109I GCAGC 3 cut(s) 154, 176, 1071
LweI GCATC 3 cut(s) 545, 748, 796
MaeI CTAG 3 cut(s) 156, 705, 762
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 2 cut(s) 13, 38
MalI GATC 9 cut(s) 387, 519, 543, 568, 766, 925, 1041, 1078, 1146
MboI GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
MboII GAAGA 3 cut(s) 206, 695, 1259
MflI RGATCY 4 cut(s) 385, 541, 566, 764
MhlI GDGCHC 4 cut(s) 72, 177, 440, 712
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 2 cut(s) 373, 419
MluNI TGGCCA 1 cut(s) 293
MmeI TCCRAC 3 cut(s) 449, 901, 1054
Mox20I TGGCCA 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 960
MscI TGGCCA 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 898
MspR9I CCNGG 5 cut(s) 243, 362, 546, 564, 1150
MvaI CCWGG 5 cut(s) 243, 362, 546, 564, 1150
MwoI GCNNNNNNNGC 6 cut(s) 422, 590, 729, 806, 1100, 1261
NdeII GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
NlaIII CATG 7 cut(s) 356, 593, 671, 806, 842, 1046, 1296
NlaIV GGNNCC 3 cut(s) 21, 63, 568
NmeAIII GCCGAG 1 cut(s) 1285
NspI RCATGY 2 cut(s) 593, 1296
PagI TCATGA 3 cut(s) 802, 838, 1042
PceI AGGCCT 1 cut(s) 1240
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 5 cut(s) 258, 737, 832, 901, 1067
PfoI TCCNGGA 2 cut(s) 241, 562
PkrI GCNGC 3 cut(s) 166, 169, 1086
PmaCI CACGTG 1 cut(s) 1285
PmlI CACGTG 1 cut(s) 1285
Ppu21I YACGTR 1 cut(s) 1285
Psp6I CCWGG 5 cut(s) 241, 360, 544, 562, 1148
PspCI CACGTG 1 cut(s) 1285
PspGI CCWGG 5 cut(s) 241, 360, 544, 562, 1148
PspN4I GGNNCC 3 cut(s) 21, 63, 568
PspPI GGNCC 1 cut(s) 946
PsrI GAACNNNNNNTAC 4 cut(s) 23, 55, 438, 470
PstI CTGCAG 2 cut(s) 172, 1105
PstNI CAGNNNCTG 2 cut(s) 545, 866
PsuI RGATCY 4 cut(s) 385, 541, 566, 764
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 4 cut(s) 456, 690, 1186, 1201
RsaNI GTAC 4 cut(s) 455, 689, 1185, 1200
SatI GCNGC 3 cut(s) 165, 168, 1085
Sau3AI GATC 9 cut(s) 385, 517, 541, 566, 764, 923, 1039, 1076, 1144
Sau96I GGNCC 1 cut(s) 946
SbfI CCTGCAGG 1 cut(s) 1105
ScaI AGTACT 1 cut(s) 1186
ScrFI CCNGG 5 cut(s) 243, 362, 546, 564, 1150
SdaI CCTGCAGG 1 cut(s) 1105
SduI GDGCHC 4 cut(s) 72, 177, 440, 712
SfaNI GCATC 3 cut(s) 545, 748, 796
SfcI CTRYAG 2 cut(s) 168, 1101
Sse8387I CCTGCAGG 1 cut(s) 1105
Sse9I AATT 2 cut(s) 373, 419
SseBI AGGCCT 1 cut(s) 1240
SsiI CCGC 2 cut(s) 895, 1197
SspMI CTAG 3 cut(s) 156, 705, 762
StuI AGGCCT 1 cut(s) 1240
StyD4I CCNGG 5 cut(s) 241, 360, 544, 562, 1148
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 7 cut(s) 38, 140, 186, 308, 679, 693, 880
TaiI ACGT 1 cut(s) 1287
TasI AATT 2 cut(s) 373, 419
TatI WGTACW 3 cut(s) 454, 688, 1184
TfiI GAWTC 5 cut(s) 258, 737, 832, 901, 1067
TscAI CASTG 6 cut(s) 53, 307, 501, 577, 730, 980
TseI GCWGC 3 cut(s) 164, 167, 1084
TspDTI ATGAA 8 cut(s) 17, 207, 630, 806, 923, 969, 1059, 1118
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 6 cut(s) 53, 307, 501, 577, 730, 980
VneI GTGCAC 1 cut(s) 708
XagI CCTNNNNNAGG 1 cut(s) 1101
XapI RAATTY 2 cut(s) 373, 419
XceI RCATGY 2 cut(s) 593, 1296
XmaJI CCTAGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 3 cut(s) 156, 705, 762
ZrmI AGTACT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.