Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032382.1

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Reverse (-)

12802 .. 13963

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032382.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggaaactccgtcccagcagcagcagcagcctccggcgaagaagaaggagacccggggccggaagcccaagcccaaggaggacaaggaggcccactcggcttcgaaaatgaagaaggctcagcagcaacaacagcagcagcagcagcacagcgtcgacgagaagtacagtcagtggaagtcgctcgtccctgtcctctacgactggcttgccaaccacaacctcgtctggccctccctctcttgccggtggggcccgcagctcgagcaggctacctacaagaatcgccagcggctctacctctctgagcagactgatggcagtgttccgaatactctggttattgcaaattgcgaggttgtcaaacgtagagttgccgctgcagagcacatatctcagttcaatgaagaagcgcgctcaccatttgtgaagaagtacaagaccatcatacatcctggggaggtaaacagaatcagagagcttccacagaacactaagatagtggcaacgcatactgacagtcctgatgtaagtgtttttcattctattatctgcgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

186

Amino Acids

21.48

Weight (kDa)

9.52

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	415
AciI	CCGC	3 cut(s)	257, 292, 378
AfaI	GTAC	2 cut(s)	167, 437
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	2 cut(s)	262, 481
AluI	AGCT	2 cut(s)	262, 481
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	44
Ama87I	CYCGRG	2 cut(s)	54, 263
AoxI	GGCC	4 cut(s)	58, 90, 230, 253
ApaI	GGGCCC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	415, 417
AspS9I	GGNCC	5 cut(s)	58, 91, 231, 253, 254
AsuC2I	CCSGG	2 cut(s)	55, 56
AsuHPI	GGTGA	1 cut(s)	411
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	2 cut(s)	54, 263
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	390
BccI	CCATC	2 cut(s)	311, 452
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	2 cut(s)	55, 56
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	381
BglI	GCCNNNNNGGC	2 cut(s)	98, 252
BlpI	GCTNAGC	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	55, 56, 456
BmeT110I	CYCGRG	2 cut(s)	54, 263
BmgT120I	GGNCC	5 cut(s)	58, 91, 231, 253, 254
BmiI	GGNNCC	3 cut(s)	59, 254, 255
BmrFI	CCNGG	3 cut(s)	55, 56, 456
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu1102I	GCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	55, 56
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	54, 55, 75, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	54, 55, 75, 455
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	134, 297, 410
BseNI	ACTGG	1 cut(s)	209
BsePI	GCGCGC	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	4 cut(s)	60, 92, 232, 255
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	2 cut(s)	54, 263
BsiSI	CCGG	4 cut(s)	35, 55, 61, 247
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	60, 92, 232, 255
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	54, 263
Bsp119I	TTCGAA	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	257, 390
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	257, 292, 378
BspANI	GGCC	4 cut(s)	60, 92, 232, 255
BspCNI	CTCAG	3 cut(s)	133, 298, 409
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	59, 254, 255
BspMAI	CTGCAG	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	4 cut(s)	54, 55, 75, 455
BssHII	GCGCGC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	170, 521
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	5 cut(s)	210, 257, 270, 290, 415
BstDEI	CTNAG	4 cut(s)	120, 306, 396, 495
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	415, 417
BstMAI	GTCTC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 28, 98, 133, 142, 145, 252, 265
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	3 cut(s)	53, 54, 454
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	415
BsuRI	GGCC	4 cut(s)	60, 92, 232, 255
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	179, 328
Cac8I	GCNNGC	5 cut(s)	210, 257, 270, 290, 415
CfoI	GCGC	2 cut(s)	415, 417
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	5 cut(s)	58, 91, 231, 253, 254
Cfr9I	CCCGGG	1 cut(s)	54
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	166, 436
CviQI	GTAC	2 cut(s)	166, 436
DdeI	CTNAG	4 cut(s)	120, 306, 396, 495
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	54, 263
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	3 cut(s)	392, 449, 513
FaqI	GGGAC	1 cut(s)	173
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	156
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	257
GlaI	GCGC	2 cut(s)	414, 416
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	4 cut(s)	60, 92, 232, 255
HapII	CCGG	4 cut(s)	35, 55, 61, 247
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	2 cut(s)	415, 417
Hin6I	GCGC	2 cut(s)	413, 415
HinP1I	GCGC	2 cut(s)	413, 415
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	283, 471
HpaII	CCGG	4 cut(s)	35, 55, 61, 247
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	157, 466
Hpy188I	TCNGA	3 cut(s)	307, 330, 476
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	157, 466
Hpy99I	CGWCG	2 cut(s)	158, 161
HpyAV	CCTTC	2 cut(s)	40, 109
HpyCH4III	ACNGT	2 cut(s)	170, 521
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	347, 383
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 28, 98, 133, 142, 145, 252, 265
HpyF3I	CTNAG	4 cut(s)	120, 306, 396, 495
HpySE526I	ACGT	1 cut(s)	367
HspAI	GCGC	2 cut(s)	413, 415
MaeII	ACGT	1 cut(s)	367
MboII	GAAGA	5 cut(s)	52, 55, 124, 419, 442
MhlI	GDGCHC	2 cut(s)	257, 390
MluCI	AATT	1 cut(s)	349
MspA1I	CMGCKG	2 cut(s)	292, 380
MspI	CCGG	4 cut(s)	35, 55, 61, 247
MspR9I	CCNGG	3 cut(s)	55, 56, 456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	8 cut(s)	25, 28, 98, 133, 142, 145, 252, 265
NciI	CCSGG	2 cut(s)	55, 56
NlaIV	GGNNCC	3 cut(s)	59, 254, 255
NmeAIII	GCCGAG	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	263
PauI	GCGCGC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	283, 471
Psp6I	CCWGG	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	59, 254, 255
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	5 cut(s)	58, 91, 231, 253, 254
PspXI	VCTCGAGB	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	385
PteI	GCGCGC	1 cut(s)	413
RsaI	GTAC	2 cut(s)	167, 437
RsaNI	GTAC	2 cut(s)	166, 436
SalI	GTCGAC	1 cut(s)	155
Sau96I	GGNCC	5 cut(s)	58, 91, 231, 253, 254
ScrFI	CCNGG	3 cut(s)	55, 56, 456
SduI	GDGCHC	2 cut(s)	257, 390
SetI	ASST	8 cut(s)	225, 264, 278, 303, 360, 370, 465, 483
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	263
SfuI	TTCGAA	1 cut(s)	104
SgrDI	CGTCGACG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	263
SmaI	CCCGGG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	3 cut(s)	257, 292, 378
StyD4I	CCNGG	3 cut(s)	53, 54, 454
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	170, 521
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	104, 156, 264
TasI	AATT	1 cut(s)	349
TatI	WGTACW	2 cut(s)	165, 435
TauI	GCSGC	2 cut(s)	295, 380
TfiI	GAWTC	2 cut(s)	283, 471
TscAI	CASTG	2 cut(s)	179, 328
TspDTI	ATGAA	3 cut(s)	125, 420, 530
TspMI	CCCGGG	1 cut(s)	54
TspRI	CASTG	2 cut(s)	179, 328
XhoI	CTCGAG	1 cut(s)	263
XmaI	CCCGGG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.