Rh2AG431800

Histone-binding protein RBBP4 or subunit C of CAF1 complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003346
Physical Location & Seq
Reverse (-)
64136463 .. 64142633
6171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG431800.1

Sequence Viewer

Length: 1326 bp
ATGTCATGCCGCTGTCTTGTTTTGTTTGTATTATTGTGTCATCCTCTTTTATATTTTTGCTGTGATTGTTTAAATCCCCTTGGTTTTTGCTTCCCCCTGTACTTTTGTCAGACCGATGGAAGTGTTCCAAATACCCTTGTCATTGCAAACTGTGAAGTTGTCAAACCTAGGGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCTCCTTTTGTAAAGAAGTATAAAACTATAATACATCCTGGAGAGGTGAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTGGCCACACACACTGACAGTCCTGATGTTCTCATTTGGGACATTGAGGCTCAACCTAATCGTCATGCTGTCCTGGGAGCTACAAATTCTCGCCCAGATCTGCTATTGACTGGTCATCAAGATAATGCTGAATTTGCACTTGCTATGTGCCCCTCGGAACCCTTTGTACTCTCTGGAGGGAAGGACAAGTCAGTGATTTTGTGGAGTATTCAAGATCATATCTCGTCTTTGGCATCAGATCCTGGGTCTGCAAGGTCTCCAGGATCTGGTGGTTCAAATGCTAAACATGCCTCTAAGGTTGGTGGGAGTAATGACAAACCCACAGACAGCCCTTCTGTTGAGCCACGAGGTATCTATCAAGGGCATGAGGATACTGTTGAAGATGTACAGTTCTGCCCATCTAGTGCGCAGGAGTTCTGCAGTGTAGGCGACGATTCTTGCCTCATACTATGGGATGCTAGATCTGGCAATAGTCCAGTTGTCAAGGTTGAGAAAGCTCATGATGCTGACCTTCATTGTGTAGATTGGAATCCTCATGATGTCAATCTCATTCTTACAGGGTCTGCCGATAAGACTGTTCGTATGTTTGACCGCCGGAATCTCGCTTCTGGAGGAGTTGGATCACCCATTCATAAGTTTGAGGGCCACAACGAAGCTGTTCTCTGTGTTCAGTGGTCTCCTGACAAGTCCTCTGTCTTTGGAAGTTCTGCTGAGGATGGCCTATTGAACATCTGGGATCATGAAAAGATTGGTAAGAAGCAAGAATCTGTTGGATCAAAGCTGCCAAATGCTCCTCCTGCAGGATTGTTTTTCCGACATGCTGGTCATAGGGACAAGGTTGTTGATTTTCATTGGAATACATCTGATCCCTGGACAATAGTAAGTGTTTCTGATGATTGTGGAAGTACTGGAGGAGGCGGTACACTCCAGATATGGCGAATGATTGATTTGATTTACAGGCCTGAGGAAGAGGTGCTGGCCGAGCTTGACAAGTTCAAATCTCATGTGTTGACATGCCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

441

Amino Acids

48.13

Weight (kDa)

5.52

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 210 - 350 8.1e-10 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 212 - 298 9.2e-09 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 219 - 258 7.6e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 219 - 349 2.1e-20 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 220 - 299 9.3e-06 WDR3 second beta-propeller domain
WDR55 PF24796 220 - 349 5.5e-08 WDR55
Beta-prop_EIPR1 PF23609 222 - 296 9.7e-10 EIPR1 beta-propeller
Beta-prop_EML_2 PF23414 235 - 354 5.6e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 241 - 347 1.1e-09 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 265 - 350 9.1e-11 Prp19 WD40 domain
Beta-prop_EIPR1 PF23609 265 - 348 2.3e-06 EIPR1 beta-propeller
Beta-prop_THOC3 PF25174 267 - 357 7.4e-13 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 270 - 349 2e-06 WDHD1 first WD40 domain
WD40 PF00400 307 - 346 1.5e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1122
Acc16I TGCGCA 1 cut(s) 708
AccB7I CCANNNNNTGG 1 cut(s) 566
AciI CCGC 3 cut(s) 10, 892, 1218
AclWI GGATC 6 cut(s) 533, 571, 928, 1044, 1081, 1160
AcoI YGGCCR 2 cut(s) 303, 1278
AcsI RAATTY 2 cut(s) 385, 431
AfaI GTAC 5 cut(s) 101, 468, 687, 1207, 1222
AfiI CCNNNNNNNGG 2 cut(s) 566, 1100
AgsI TTSAA 6 cut(s) 202, 512, 576, 680, 1027, 1297
AjnI CCWGG 5 cut(s) 253, 372, 541, 559, 1169
AluBI AGCT 6 cut(s) 179, 380, 797, 956, 1081, 1285
AluI AGCT 6 cut(s) 179, 380, 797, 956, 1081, 1285
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 561, 981
AlwI GGATC 6 cut(s) 533, 571, 928, 1044, 1081, 1160
AlwNI CAGNNNCTG 3 cut(s) 542, 566, 863
AoxI GGCC 5 cut(s) 303, 943, 1018, 1259, 1278
ApeKI GCWGC 3 cut(s) 176, 179, 1081
ApoI RAATTY 2 cut(s) 385, 431
Asp700I GAANNNNTTC 1 cut(s) 957
AspA2I CCTAGG 1 cut(s) 167
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 943
AsuHPI GGTGA 2 cut(s) 274, 915
AvrII CCTAGG 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 1263
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 305
BauI CACGAG 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 3 cut(s) 166, 188, 1068
BccI CCATC 3 cut(s) 110, 706, 1010
BciT130I CCWGG 5 cut(s) 255, 374, 543, 561, 1171
BciVI GTATCC 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 561, 981
BfaI CTAG 3 cut(s) 168, 702, 759
BfmI CTRYAG 3 cut(s) 180, 718, 1098
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 2 cut(s) 397, 761
BisI GCNGC 4 cut(s) 10, 177, 180, 1082
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 4 cut(s) 11, 178, 181, 1083
BmcAI AGTACT 1 cut(s) 1207
Bme1390I CCNGG 5 cut(s) 255, 374, 543, 561, 1171
BmgT120I GGNCC 1 cut(s) 943
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 5 cut(s) 255, 374, 543, 561, 1171
BmsI GCATC 3 cut(s) 542, 745, 793
BpmI CTGGAG 6 cut(s) 276, 495, 543, 930, 1211, 1230
Bpu10I CCTNAGC 1 cut(s) 1011
BsaBI GATNNNNATC 2 cut(s) 828, 843
BsaI GGTCTC 2 cut(s) 561, 981
BsaJI CCNNGG 6 cut(s) 79, 167, 373, 453, 542, 1169
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 1100
Bse1I ACTGG 3 cut(s) 415, 776, 1213
Bse21I CCTNAGG 1 cut(s) 1263
Bse3DI GCAATG 1 cut(s) 141
Bse8I GATNNNNATC 2 cut(s) 828, 843
BseBI CCWGG 5 cut(s) 255, 374, 543, 561, 1171
BseDI CCNNGG 6 cut(s) 79, 167, 373, 453, 542, 1169
BseGI GGATG 4 cut(s) 40, 250, 760, 1021
BseJI GATNNNNATC 2 cut(s) 828, 843
BseLI CCNNNNNNNGG 2 cut(s) 566, 1100
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 1002, 1254
BseNI ACTGG 3 cut(s) 415, 776, 1213
BseRI GAGGAG 3 cut(s) 927, 1083, 1227
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 166, 188, 1068
BshFI GGCC 5 cut(s) 305, 945, 1020, 1261, 1280
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 895
BslFI GGGAC 2 cut(s) 353, 1145
BslI CCNNNNNNNGG 2 cut(s) 566, 1100
BsmAI GTCTC 2 cut(s) 561, 981
BsmFI GGGAC 2 cut(s) 353, 1145
BsnI GGCC 5 cut(s) 305, 945, 1020, 1261, 1280
Bso31I GGTCTC 2 cut(s) 561, 981
Bsp1286I GDGCHC 2 cut(s) 189, 452
Bsp1407I TGTACA 1 cut(s) 685
Bsp143I GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
BspACI CCGC 3 cut(s) 10, 892, 1218
BspANI GGCC 5 cut(s) 305, 945, 1020, 1261, 1280
BspCNI CTCAG 2 cut(s) 1003, 1255
BspHI TCATGA 3 cut(s) 799, 835, 1039
BspLI GGNNCC 1 cut(s) 459
BspMAI CTGCAG 3 cut(s) 184, 722, 1102
BspPI GGATC 6 cut(s) 533, 571, 928, 1044, 1081, 1160
BspTNI GGTCTC 2 cut(s) 561, 981
BsrDI GCAATG 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 3 cut(s) 415, 776, 1213
BssECI CCNNGG 6 cut(s) 79, 167, 373, 453, 542, 1169
BssMI GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 2 cut(s) 79, 167
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 5 cut(s) 255, 374, 543, 561, 1171
Bst4CI ACNGT 6 cut(s) 152, 198, 320, 676, 690, 877
Bst6I CTCTTC 1 cut(s) 1263
BstAUI TGTACA 1 cut(s) 685
BstC8I GCNNGC 2 cut(s) 214, 1278
BstDEI CTNAG 3 cut(s) 594, 1011, 1263
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstF5I GGATG 4 cut(s) 40, 250, 760, 1021
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 9 cut(s) 400, 517, 541, 566, 764, 923, 1039, 1076, 1168
BstMAI GTCTC 2 cut(s) 561, 981
BstMBI GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
BstMWI GCNNNNNNNGC 6 cut(s) 434, 587, 726, 803, 1097, 1282
BstNI CCWGG 5 cut(s) 255, 374, 543, 561, 1171
BstNSI RCATGY 3 cut(s) 590, 1121, 1317
BstSCI CCNGG 5 cut(s) 253, 372, 541, 559, 1169
BstSFI CTRYAG 3 cut(s) 180, 718, 1098
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 166, 188, 1068
BstX2I RGATCY 4 cut(s) 397, 538, 563, 761
BstYI RGATCY 4 cut(s) 397, 538, 563, 761
Bsu36I CCTNAGG 1 cut(s) 1263
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 5 cut(s) 305, 945, 1020, 1261, 1280
BtsCI GGATG 4 cut(s) 40, 250, 760, 1021
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 4 cut(s) 312, 498, 727, 977
Cac8I GCNNGC 2 cut(s) 214, 1278
CaiI CAGNNNCTG 3 cut(s) 542, 566, 863
CciI TCATGA 3 cut(s) 799, 835, 1039
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 943
Csp6I GTAC 5 cut(s) 100, 467, 686, 1206, 1221
CviQI GTAC 5 cut(s) 100, 467, 686, 1206, 1221
DdeI CTNAG 3 cut(s) 594, 1011, 1263
DpnI GATC 9 cut(s) 399, 516, 540, 565, 763, 922, 1038, 1075, 1167
DpnII GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
DraI TTTAAA 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 1122
DseDI GACNNNNNNGTC 1 cut(s) 1122
EaeI YGGCCR 2 cut(s) 303, 1278
Eam1104I CTCTTC 1 cut(s) 1263
EarI CTCTTC 1 cut(s) 1263
Eco130I CCWWGG 2 cut(s) 79, 167
Eco147I AGGCCT 1 cut(s) 1261
Eco31I GGTCTC 2 cut(s) 561, 981
Eco81I CCTNAGG 1 cut(s) 1263
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoRII CCWGG 5 cut(s) 253, 372, 541, 559, 1169
EcoT14I CCWWGG 2 cut(s) 79, 167
ErhI CCWWGG 2 cut(s) 79, 167
FaqI GGGAC 2 cut(s) 353, 1145
Fnu4HI GCNGC 4 cut(s) 10, 177, 180, 1082
FokI GGATG 4 cut(s) 27, 237, 767, 1028
Fsp4HI GCNGC 4 cut(s) 10, 177, 180, 1082
FspBI CTAG 3 cut(s) 168, 702, 759
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 1 cut(s) 708
GluI GCNGC 4 cut(s) 10, 177, 180, 1082
GsuI CTGGAG 6 cut(s) 276, 495, 543, 930, 1211, 1230
HaeIII GGCC 5 cut(s) 305, 945, 1020, 1261, 1280
HapII CCGG 1 cut(s) 895
HhaI GCGC 1 cut(s) 709
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HinfI GANTC 5 cut(s) 270, 734, 829, 898, 1064
HpaII CCGG 1 cut(s) 895
HphI GGTGA 2 cut(s) 274, 915
Hpy166II GTNNAC 3 cut(s) 265, 1223, 1311
Hpy188I TCNGA 6 cut(s) 111, 457, 538, 1115, 1165, 1192
Hpy8I GTNNAC 3 cut(s) 265, 1223, 1311
Hpy99I CGWCG 1 cut(s) 734
HpyAV CCTTC 3 cut(s) 475, 642, 821
HpyCH4III ACNGT 6 cut(s) 152, 198, 320, 676, 690, 877
HpyCH4V TGCA 7 cut(s) 146, 176, 182, 437, 551, 720, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 434, 587, 726, 803, 1097, 1282
HpyF3I CTNAG 3 cut(s) 594, 1011, 1263
HspAI GCGC 1 cut(s) 707
Kzo9I GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
LmnI GCTCC 2 cut(s) 377, 1096
Lsp1109I GCAGC 3 cut(s) 166, 188, 1068
LweI GCATC 3 cut(s) 542, 745, 793
MaeI CTAG 3 cut(s) 168, 702, 759
MalI GATC 9 cut(s) 399, 516, 540, 565, 763, 922, 1038, 1075, 1167
MboI GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
MboII GAAGA 3 cut(s) 218, 692, 1280
MflI RGATCY 4 cut(s) 397, 538, 563, 761
MhlI GDGCHC 2 cut(s) 189, 452
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 2 cut(s) 385, 431
MluNI TGGCCA 1 cut(s) 305
MmeI TCCRAC 3 cut(s) 898, 1051, 1138
Mox20I TGGCCA 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 957
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 12, 179
MspI CCGG 1 cut(s) 895
MspR9I CCNGG 5 cut(s) 255, 374, 543, 561, 1171
MvaI CCWGG 5 cut(s) 255, 374, 543, 561, 1171
MwoI GCNNNNNNNGC 6 cut(s) 434, 587, 726, 803, 1097, 1282
NdeII GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
NlaIV GGNNCC 1 cut(s) 459
NmeAIII GCCGAG 1 cut(s) 1306
NsbI TGCGCA 1 cut(s) 708
NspI RCATGY 3 cut(s) 590, 1121, 1317
PagI TCATGA 3 cut(s) 799, 835, 1039
PceI AGGCCT 1 cut(s) 1261
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 5 cut(s) 270, 734, 829, 898, 1064
PflMI CCANNNNNTGG 1 cut(s) 566
PfoI TCCNGGA 2 cut(s) 253, 559
PkrI GCNGC 4 cut(s) 11, 178, 181, 1083
Psp6I CCWGG 5 cut(s) 253, 372, 541, 559, 1169
PspGI CCWGG 5 cut(s) 253, 372, 541, 559, 1169
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 1 cut(s) 943
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PstI CTGCAG 3 cut(s) 184, 722, 1102
PstNI CAGNNNCTG 3 cut(s) 542, 566, 863
PsuI RGATCY 4 cut(s) 397, 538, 563, 761
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 5 cut(s) 101, 468, 687, 1207, 1222
RsaNI GTAC 5 cut(s) 100, 467, 686, 1206, 1221
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 10, 177, 180, 1082
Sau3AI GATC 9 cut(s) 397, 514, 538, 563, 761, 920, 1036, 1073, 1165
Sau96I GGNCC 1 cut(s) 943
SbfI CCTGCAGG 1 cut(s) 1102
ScaI AGTACT 1 cut(s) 1207
ScrFI CCNGG 5 cut(s) 255, 374, 543, 561, 1171
SdaI CCTGCAGG 1 cut(s) 1102
SduI GDGCHC 2 cut(s) 189, 452
SfaNI GCATC 3 cut(s) 542, 745, 793
SfcI CTRYAG 3 cut(s) 180, 718, 1098
Sse8387I CCTGCAGG 1 cut(s) 1102
Sse9I AATT 2 cut(s) 385, 431
SseBI AGGCCT 1 cut(s) 1261
SsiI CCGC 3 cut(s) 10, 892, 1218
SspMI CTAG 3 cut(s) 168, 702, 759
StuI AGGCCT 1 cut(s) 1261
StyD4I CCNGG 5 cut(s) 253, 372, 541, 559, 1169
StyI CCWWGG 2 cut(s) 79, 167
TaaI ACNGT 6 cut(s) 152, 198, 320, 676, 690, 877
TaqII GACCGA 1 cut(s) 128
TasI AATT 2 cut(s) 385, 431
TatI WGTACW 4 cut(s) 99, 466, 685, 1205
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 5 cut(s) 270, 734, 829, 898, 1064
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 4 cut(s) 319, 498, 727, 977
TseI GCWGC 3 cut(s) 176, 179, 1081
TspDTI ATGAA 5 cut(s) 219, 803, 920, 1056, 1139
TspRI CASTG 4 cut(s) 319, 498, 727, 977
Van91I CCANNNNNTGG 1 cut(s) 566
XagI CCTNNNNNAGG 1 cut(s) 1098
XapI RAATTY 2 cut(s) 385, 431
XceI RCATGY 3 cut(s) 590, 1121, 1317
XmaJI CCTAGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 3 cut(s) 168, 702, 759
ZrmI AGTACT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.