Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Reverse (-)

16477003 .. 16482474

Gene Structure 5472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1207100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGACGCTCAGTCGCAGCAGCAAGCCGGACCGGTGAAGAAGAAGGAGACTCGGGGCCGGAAGCCCAAGCCCAAGGAAGAGAAGAAAGACGACCACCAACAGCAAGCCAAGCTGAAGAAGTCGCAGCAGAACGCCACCGTCGACGACAAGTACACTCAGTGGAAGTCCCTCGTCCCGATCCTCTACGACTGGCTCGCCAACCACAATCTCGTCTGGCCCTCCCTCTCTTGCCGGTGGGGACCTCAGCTCGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCCGAGCAGACTGATGGCAGTGTTCCAAATACTCTGGTTATTGCAAACTGTGAGGTTGTCAAGCCGAGAGTTGCCGCTGCAGAGCATATATCTCAGTTCAATGAGGAAGCCCGCTCACCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGAGAGGTAAACAGAATCAGAGAACTTCCACAGAACACTAAGATAGTGGCCACACATACCGACAGTCCTGATGTTCTAATTTGGGATGTTGAAGCTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAACCTCGCGTCCAGATTTGATTTTGACTGGACATCAAGATAATGCTGAATTTGCTCTTGCATTGTGTCCAACTGAGCCCTACGTGCTCTCTGGAGGGAAGGACAAAACAGTGGTTTTGTGGAGTATTCAGGACCATATAGCAGCCTCTACCACTGATCCAGCTGCAACCAAGTCTCCAGGATCAATCATTAAAAAATCAAAGTCCGGGGATGGTAATGATAAAGCTACTGATGGCCCTACTGTTGCACCTCGGGGAATCTACTATGGGCATGAGGACACAGTTGAAGATGTAGCATTTTGCCCTTCAAGTTCACAGGAGTTCTGTAGTGTTGGCGACGATTCCTGCCTCATATTATGGGATGCGCGTGTTGGCTCTAGCCCTGCTGTAAAGGTTGAAAAAGCTCATGATGCTGATGTTCACTGTGTTGATTGGAATCCCCTTAATGATAACCTTATTTTAACAGGGTCAGCAGATAATTCTGTTCGCTTGTTTGATCGCCGGAATCTCACTTCTGAAGGAGTTGGGGCACCTATATATAAATTTGAGGGTCATAAAGCAGCTGTTCTTTGTGTTCAGTGGTGTCCAGACAAATCGTCTGTCTTTGGAAGTTCTGCAGAGGATGGTCTTTTAAACATTTGGGATTATGAGAAGGTCAGTAAGAAGGAGCGAACTCCAAAAGGCCCAACTTCACCACCTGGTCTGTTTTTCCAGCATGCTGGGCACAGGGACAAAGTTGTTGATTTCCATTGGAATGCATCTGATCCGTGGACTGTTGTCAGTGTGTCTGATGACTGTGAAAGTACTGGCGGAGGGGGCACATTGCAGATATGGAGAATGAGTGATCTGATCTACAGGCCCGAAGAGGAGGTTCTGGCAGAGCTTGAGAAGTTCAAGTCCCATGTTGTTTCCTGTTCTTCAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

499

Amino Acids

55.15

Weight (kDa)

6.08

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	49 - 116	1.1e-19	Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_TEP1_2nd	PF25047	270 - 408	6.4e-12	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	275 - 407	1.2e-19	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	276 - 358	1.1e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	278 - 355	6.3e-06	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	278 - 357	7.9e-06	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	279 - 354	3.8e-10	EIPR1 beta-propeller
WDR55	PF24796	280 - 407	1e-06	WDR55
WD40_CDC20-Fz	PF24807	280 - 408	8.3e-15	CDC20/Fizzy WD40 domain
Beta-prop_Aladin	PF25460	283 - 407	5e-06	Aladin seven-bladed propeller
Beta-prop_EML_2	PF23414	291 - 417	9.6e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	307 - 410	4.7e-10	WDR3 first beta-propeller domain
WD40	PF00400	322 - 355	8.9e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	323 - 452	7.7e-11	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	325 - 413	8.4e-12	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	326 - 411	4.9e-07	WDHD1 first WD40 domain
WD40	PF00400	366 - 404	1.7e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1096
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	577, 934
AciI	CCGC	3 cut(s)	363, 400, 1377
AclWI	GGATC	4 cut(s)	172, 719, 757, 1325
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	617, 1109
AcuI	CTGAAG	2 cut(s)	134, 1104
AdeI	CACNNNGTG	1 cut(s)	159
AfaI	GTAC	3 cut(s)	152, 422, 1372
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	7 cut(s)	388, 533, 854, 876, 965, 1462, 1488
AhdI	GACNNNNNGTC	2 cut(s)	10, 1162
AjnI	CCWGG	3 cut(s)	439, 745, 1264
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	3 cut(s)	41, 284, 747
AlwI	GGATC	4 cut(s)	172, 719, 757, 1325
Ama87I	CYCGRG	3 cut(s)	51, 248, 819
AoxI	GGCC	6 cut(s)	55, 215, 489, 802, 1249, 1424
ApeKI	GCWGC	7 cut(s)	16, 19, 124, 365, 710, 731, 1127
ApoI	RAATTY	2 cut(s)	617, 1109
ArsI	GACNNNNNNTTYG	2 cut(s)	1152, 1184
AsiGI	ACCGGT	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 803, 1250, 1425
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	3 cut(s)	46, 396, 1251
AvaI	CYCGRG	3 cut(s)	51, 248, 819
AvaII	GGWCC	3 cut(s)	29, 239, 700
BaeGI	GKGCMC	3 cut(s)	1099, 1293, 1388
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	1096
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	657
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	7 cut(s)	28, 31, 136, 352, 718, 722, 1139
BccI	CCATC	5 cut(s)	296, 437, 773, 794, 1184
BciT130I	CCWGG	3 cut(s)	441, 747, 1266
BcnI	CCSGG	1 cut(s)	775
BcoDI	GTCTC	3 cut(s)	41, 284, 747
BfaI	CTAG	1 cut(s)	945
BfmI	CTRYAG	4 cut(s)	366, 892, 1182, 1420
BisI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1128
BlsI	GCNGC	8 cut(s)	18, 21, 126, 364, 367, 712, 733, 1129
BmcAI	AGTACT	1 cut(s)	1372
Bme1390I	CCNGG	4 cut(s)	441, 747, 775, 1266
Bme18I	GGWCC	3 cut(s)	29, 239, 700
BmeRI	GACNNNNNGTC	2 cut(s)	10, 1162
BmeT110I	CYCGRG	3 cut(s)	51, 248, 819
BmgT120I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 803, 1250, 1425
BmiI	GGNNCC	3 cut(s)	56, 240, 1098
BmrFI	CCNGG	4 cut(s)	441, 747, 775, 1266
BmsI	GCATC	3 cut(s)	919, 967, 1334
BoxI	GACNNNNGTC	1 cut(s)	1343
BpmI	CTGGAG	3 cut(s)	462, 681, 729
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	1472
BpuMI	CCSGG	1 cut(s)	775
BsaAI	YACGTR	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaJI	CCNNGG	5 cut(s)	72, 559, 774, 818, 1334
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	4 cut(s)	727, 757, 1393, 1423
Bse118I	RCCGGY	2 cut(s)	31, 231
Bse1I	ACTGG	3 cut(s)	194, 601, 1378
Bse3DI	GCAATG	1 cut(s)	1388
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	3 cut(s)	441, 747, 1266
BseDI	CCNNGG	5 cut(s)	72, 559, 774, 818, 1334
BseGI	GGATG	5 cut(s)	436, 532, 784, 934, 1195
BseJI	GATNNNNATC	1 cut(s)	1002
BseMI	GCAATG	1 cut(s)	1388
BseMII	CTCAG	5 cut(s)	23, 170, 257, 395, 633
BseNI	ACTGG	3 cut(s)	194, 601, 1378
BseRI	GAGGAG	1 cut(s)	1448
BseSI	GKGCMC	3 cut(s)	1099, 1293, 1388
BseXI	GCAGC	7 cut(s)	28, 31, 136, 352, 718, 722, 1139
BseYI	CCCAGC	1 cut(s)	1286
Bsh1236I	CGCG	2 cut(s)	577, 934
BshFI	GGCC	6 cut(s)	57, 217, 491, 804, 1251, 1426
BshNI	GGYRCC	1 cut(s)	1096
BshTI	ACCGGT	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	3 cut(s)	51, 248, 819
BsiSI	CCGG	6 cut(s)	27, 32, 58, 232, 774, 1069
BslFI	GGGAC	5 cut(s)	151, 158, 252, 1310, 1450
BsmAI	GTCTC	3 cut(s)	41, 284, 747
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	5 cut(s)	151, 158, 252, 1310, 1450
BsmI	GAATGC	1 cut(s)	1327
BsnI	GGCC	6 cut(s)	57, 217, 491, 804, 1251, 1426
BsoBI	CYCGRG	3 cut(s)	51, 248, 819
Bsp1286I	GDGCHC	5 cut(s)	648, 657, 1099, 1293, 1388
Bsp143I	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
BspACI	CCGC	3 cut(s)	363, 400, 1377
BspANI	GGCC	6 cut(s)	57, 217, 491, 804, 1251, 1426
BspCNI	CTCAG	5 cut(s)	22, 169, 256, 394, 634
BspFNI	CGCG	2 cut(s)	577, 934
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	3 cut(s)	56, 240, 1098
BspMAI	CTGCAG	2 cut(s)	370, 1186
BspPI	GGATC	4 cut(s)	172, 719, 757, 1325
BspT107I	GGYRCC	1 cut(s)	1096
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	1388
BsrFI	RCCGGY	2 cut(s)	31, 231
BsrI	ACTGG	3 cut(s)	194, 601, 1378
BssAI	RCCGGY	2 cut(s)	31, 231
BssECI	CCNNGG	5 cut(s)	72, 559, 774, 818, 1334
BssMI	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
BssT1I	CCWWGG	2 cut(s)	72, 559
Bst2UI	CCWGG	3 cut(s)	441, 747, 1266
Bst6I	CTCTTC	2 cut(s)	72, 1425
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	7 cut(s)	24, 105, 195, 255, 275, 400, 1284
BstDEI	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
BstDSI	CCRYGG	1 cut(s)	1334
BstF5I	GGATG	5 cut(s)	436, 532, 784, 934, 1195
BstFNI	CGCG	2 cut(s)	577, 934
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	7 cut(s)	180, 727, 752, 1066, 1333, 1414, 1419
BstMAI	GTCTC	3 cut(s)	41, 284, 747
BstMBI	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 620, 652, 977, 1288, 1383
BstNI	CCWGG	3 cut(s)	441, 747, 1266
BstNSI	RCATGY	1 cut(s)	1286
BstPAI	GACNNNNGTC	1 cut(s)	1343
BstSCI	CCNGG	4 cut(s)	439, 745, 773, 1264
BstSFI	CTRYAG	4 cut(s)	366, 892, 1182, 1420
BstSLI	GKGCMC	3 cut(s)	1099, 1293, 1388
BstUI	CGCG	2 cut(s)	577, 934
BstV1I	GCAGC	7 cut(s)	28, 31, 136, 352, 718, 722, 1139
BstXI	CCANNNNNNTGG	1 cut(s)	1286
BsuRI	GGCC	6 cut(s)	57, 217, 491, 804, 1251, 1426
BtgI	CCRYGG	1 cut(s)	1334
BtsCI	GGATG	5 cut(s)	436, 532, 784, 934, 1195
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	7 cut(s)	164, 313, 684, 720, 988, 1151, 1354
Cac8I	GCNNGC	7 cut(s)	24, 105, 195, 255, 275, 400, 1284
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	934
Cfr10I	RCCGGY	2 cut(s)	31, 231
Cfr13I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 803, 1250, 1425
CpoI	CGGWCCG	1 cut(s)	29
CseI	GACGC	3 cut(s)	14, 266, 566
CsiI	ACCWGGT	1 cut(s)	1264
Csp6I	GTAC	3 cut(s)	151, 421, 1371
CspAI	ACCGGT	1 cut(s)	31
CspI	CGGWCCG	1 cut(s)	29
CviAII	CATG	5 cut(s)	551, 839, 974, 1283, 1469
CviQI	GTAC	3 cut(s)	151, 421, 1371
DdeI	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
DpnI	GATC	7 cut(s)	179, 726, 751, 1065, 1332, 1413, 1418
DpnII	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
DraI	TTTAAA	1 cut(s)	1200
DraIII	CACNNNGTG	1 cut(s)	159
DriI	GACNNNNNGTC	2 cut(s)	10, 1162
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	72, 1425
Eam1105I	GACNNNNNGTC	2 cut(s)	10, 1162
EarI	CTCTTC	2 cut(s)	72, 1425
EciI	GGCGGA	1 cut(s)	1392
Eco130I	CCWWGG	2 cut(s)	72, 559
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	3 cut(s)	29, 239, 700
Eco57I	CTGAAG	2 cut(s)	134, 1104
Eco88I	CYCGRG	3 cut(s)	51, 248, 819
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	439, 745, 1264
EcoT14I	CCWWGG	2 cut(s)	72, 559
EcoT22I	ATGCAT	1 cut(s)	1327
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	2 cut(s)	72, 559
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	5 cut(s)	554, 842, 977, 1286, 1472
FaqI	GGGAC	5 cut(s)	151, 158, 252, 1310, 1450
FatI	CATG	5 cut(s)	550, 838, 973, 1282, 1468
FauI	CCCGC	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1128
FokI	GGATG	5 cut(s)	423, 539, 791, 941, 1202
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1128
FspBI	CTAG	1 cut(s)	945
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1128
GsaI	CCCAGC	1 cut(s)	1290
GsuI	CTGGAG	3 cut(s)	462, 681, 729
HaeIII	GGCC	6 cut(s)	57, 217, 491, 804, 1251, 1426
HapII	CCGG	6 cut(s)	27, 32, 58, 232, 774, 1069
HgaI	GACGC	3 cut(s)	14, 266, 566
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	5 cut(s)	554, 842, 977, 1286, 1472
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	7 cut(s)	49, 268, 456, 825, 908, 1003, 1072
HpaII	CCGG	6 cut(s)	27, 32, 58, 232, 774, 1069
HphI	GGTGA	3 cut(s)	46, 396, 1251
Hpy166II	GTNNAC	6 cut(s)	142, 153, 451, 881, 988, 1338
Hpy188I	TCNGA	6 cut(s)	292, 461, 1084, 1330, 1357, 1416
Hpy188III	TCNNGA	8 cut(s)	175, 509, 581, 605, 660, 698, 974, 1154
Hpy8I	GTNNAC	6 cut(s)	142, 153, 451, 881, 988, 1338
Hpy99I	CGWCG	3 cut(s)	143, 146, 908
HpyAV	CCTTC	6 cut(s)	37, 661, 882, 1079, 1213, 1225
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	8 cut(s)	332, 368, 629, 734, 815, 1184, 1325, 1393
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 620, 652, 977, 1288, 1383
HpyF3I	CTNAG	6 cut(s)	9, 156, 243, 381, 480, 642
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	5 cut(s)	554, 842, 977, 1286, 1472
HspAI	GCGC	1 cut(s)	932
Kzo9I	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
LmnI	GCTCC	2 cut(s)	563, 1234
Lsp1109I	GCAGC	7 cut(s)	28, 31, 136, 352, 718, 722, 1139
LweI	GCATC	3 cut(s)	919, 967, 1334
MabI	ACCWGGT	1 cut(s)	1264
MaeI	CTAG	1 cut(s)	945
MaeII	ACGT	1 cut(s)	651
MalI	GATC	7 cut(s)	179, 726, 751, 1065, 1332, 1413, 1418
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
MboII	GAAGA	9 cut(s)	49, 52, 89, 94, 127, 427, 866, 1442, 1476
MhlI	GDGCHC	5 cut(s)	648, 657, 1099, 1293, 1388
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	4 cut(s)	519, 617, 1045, 1109
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	662
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	1327
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	4 cut(s)	759, 1011, 1028, 1199
MslI	CAYNNNNRTG	1 cut(s)	1320
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	3 cut(s)	365, 731, 1130
MspI	CCGG	6 cut(s)	27, 32, 58, 232, 774, 1069
MspR9I	CCNGG	4 cut(s)	441, 747, 775, 1266
Mva1269I	GAATGC	1 cut(s)	1327
MvaI	CCWGG	3 cut(s)	441, 747, 1266
MvnI	CGCG	2 cut(s)	577, 934
MwoI	GCNNNNNNNGC	6 cut(s)	109, 620, 652, 977, 1288, 1383
NciI	CCSGG	1 cut(s)	775
NdeII	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
NlaIII	CATG	5 cut(s)	554, 842, 977, 1286, 1472
NlaIV	GGNNCC	3 cut(s)	56, 240, 1098
NmeAIII	GCCGAG	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	1327
NspI	RCATGY	1 cut(s)	1286
PaeI	GCATGC	1 cut(s)	1286
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	973
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	1327
PfeI	GAWTC	6 cut(s)	268, 456, 825, 908, 1003, 1072
PfoI	TCCNGGA	2 cut(s)	439, 745
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	8 cut(s)	18, 21, 126, 364, 367, 712, 733, 1129
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	1343
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	3 cut(s)	439, 745, 1264
PspFI	CCCAGC	1 cut(s)	1286
PspGI	CCWGG	3 cut(s)	439, 745, 1264
PspN4I	GGNNCC	3 cut(s)	56, 240, 1098
PspPI	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 803, 1250, 1425
PspPPI	RGGWCCY	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	370, 1186
PvuII	CAGCTG	2 cut(s)	731, 1130
RsaI	GTAC	3 cut(s)	152, 422, 1372
RsaNI	GTAC	3 cut(s)	151, 421, 1371
RseI	CAYNNNNRTG	1 cut(s)	1320
Rsr2I	CGGWCCG	1 cut(s)	29
RsrII	CGGWCCG	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	759, 1011, 1028, 1199
SatI	GCNGC	8 cut(s)	17, 20, 125, 363, 366, 711, 732, 1128
Sau3AI	GATC	7 cut(s)	177, 724, 749, 1063, 1330, 1411, 1416
Sau96I	GGNCC	8 cut(s)	29, 55, 216, 239, 700, 803, 1250, 1425
ScaI	AGTACT	1 cut(s)	1372
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	4 cut(s)	441, 747, 775, 1266
SduI	GDGCHC	5 cut(s)	648, 657, 1099, 1293, 1388
SexAI	ACCWGGT	1 cut(s)	1264
SfaNI	GCATC	3 cut(s)	919, 967, 1334
SfcI	CTRYAG	4 cut(s)	366, 892, 1182, 1420
Sfr274I	CTCGAG	1 cut(s)	248
SgrDI	CGTCGACG	1 cut(s)	140
SinI	GGWCC	3 cut(s)	29, 239, 700
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	1320
SmlI	CTYRAG	2 cut(s)	248, 1451
SmoI	CTYRAG	2 cut(s)	248, 1451
SphI	GCATGC	1 cut(s)	1286
Sse9I	AATT	4 cut(s)	519, 617, 1045, 1109
SsiI	CCGC	3 cut(s)	363, 400, 1377
SspMI	CTAG	1 cut(s)	945
StyD4I	CCNGG	4 cut(s)	439, 745, 773, 1264
StyI	CCWWGG	2 cut(s)	72, 559
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	2 cut(s)	141, 249
TasI	AATT	4 cut(s)	519, 617, 1045, 1109
TatI	WGTACW	3 cut(s)	150, 420, 1370
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	6 cut(s)	268, 456, 825, 908, 1003, 1072
Tru1I	TTAA	4 cut(s)	759, 1011, 1028, 1199
Tru9I	TTAA	4 cut(s)	759, 1011, 1028, 1199
TscAI	CASTG	7 cut(s)	164, 313, 684, 727, 995, 1151, 1354
TseI	GCWGC	7 cut(s)	16, 19, 124, 365, 710, 731, 1127
TspGWI	ACGGA	1 cut(s)	1323
TspRI	CASTG	7 cut(s)	164, 313, 684, 727, 995, 1151, 1354
VpaK11BI	GGWCC	3 cut(s)	29, 239, 700
XapI	RAATTY	2 cut(s)	617, 1109
XceI	RCATGY	1 cut(s)	1286
XhoI	CTCGAG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	945
ZrmI	AGTACT	1 cut(s)	1372
Zsp2I	ATGCAT	1 cut(s)	1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.