Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003346

Physical Location & Seq

Genomic Coordinates Reverse (-)

6960502 .. 6965672

Gene Structure 5171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGAAACTCCGTCGCAGCAGCAGCAGCAGCAACCTCCGGCGAAGAAGAAGGAGACCCGGGGCCGGAAGCCCAAGCCCAAGGAGGACAAGGAGGCCCACTCGGCTTCGAAAATGAAGAAGGCTCAGCAGCAACAACAGCAGCAGCAGCAGCACAGCGTCGACGAGAAGTACAGTCAGTGGAAGTCGCTCGTCCCTGTCCTCTACGACTGGCTTGCCAACCACAACCTCGTCTGGCCCTCCCTCTCTTGCCGGTGGGGCCCGCAGCTCGAGCAGGCTACCTACAAGAATCGCCAGCGGCTCTACCTCTCTGAGCAGACTGATGGCAGTGTTCCGAATACTCTGGTTATTGCAAATTGCGAGGTTGTCAAACGTAGAGTTGCCGCTGCGGAGCACATATCTCAGTTCAATGAAGAAGCGCGCTCACCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGGGAGGTAAACAGAATCAGAGAGCTTCCGCAGAACACTAAGATAGTGGCAACGCATACTGACAGTCCTGATGTCCTTATTTGGGATGTTGAAGCTCAACCTAACCGTCATGCTGTCTTTGGGGCTACAAACTCTCGTCCGGATTTGATTTTGACTGGACATCAAGATAATGCAGAATTTGCTCTTGCAATGTGTCCAACTGAACCCTATGTGCTCTCTGGAGGTAAGGACAAAACAGTGGTTTTGTGGAGTATTCAGGACCATATAGCAGCATCTACCACAGATCCAGCAGCAACCAAGTCTCCAGGATCTGGTGGATCAATTATTAAGCCTGGGGATGGTAATGAAAAGACTGCTGATGGTCCTTCTGTTGCACCAAGGGGTGTCTACCAGGGGCACGAGGATACAGTGGAAGATGTGGCATTTTGCCCAACTAGCTCACAGGAGTTCTGTAGTGTTGGTGACGATGCCTGCCTTATACTATGGGATGCACGTGTGGGTTCTAGTCCTGCTGTAAAGGTTGAAAAAGCGCACGATGCTGATCTTCACTGTGTTGATTGGAATCCCCATGATGATAACCTTATCCTAACAGGGTCAGCAGATCATTCTGTTCGCATGTTTGATCGGCGGAATCTTACTTCTGGTGGAGTTGGCGCACCTATTTATAAATTTGAGGGTCATAAAGCTGCTGTTCTCTGTGTCCAGTGGTCTCCAGACAAATCATCCATCTTTGGAAGTTCTGCAGAGGATGGTCTTTTAAACATTTGGGATTATGAGAAGGTCAGTAAGAAGGAGCGAACTTCCAAGAACCCAAGTTCTCCTCCTGGTTTGTTTTTCCAGCATGCAGGGCACAGGGACAAAGTTGTTGATTTTCATTGGAATGCATCTGACCCATGGACTGTTGTTAGTGTGTCTGATGACTGTGATACTACTGGTGGAGGGGGGACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGGCCTGAAGAGGAGGTTTTGGAAGAGCTTGAGAAGTTCAAGTCACATGTTATTTCTTGTGCGAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

503

Amino Acids

55.87

Weight (kDa)

6.03

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	55 - 122	9e-20	Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_TEP1_2nd	PF25047	276 - 415	2.5e-10	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	281 - 362	1.8e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	282 - 414	2e-19	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	282 - 363	5.4e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	283 - 322	8e-06	THOC3 beta-propeller domain
WDR55	PF24796	284 - 414	6.5e-07	WDR55
Beta-prop_EML	PF23409	286 - 416	6.4e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EIPR1	PF23609	286 - 360	3.8e-09	EIPR1 beta-propeller
Beta-prop_Aladin	PF25460	289 - 413	2.7e-06	Aladin seven-bladed propeller
Beta-prop_EML_2	PF23414	299 - 424	2.2e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	313 - 417	9.7e-10	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	329 - 459	1.1e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	331 - 421	6.9e-12	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	333 - 419	4e-07	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	346 - 415	4.4e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	372 - 410	2.7e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19520 AT4G29730 AT4G29730 AT4G29730
fragaria_vesca	FvH4_1g07500 FvH4_6g33340 FvH4_6g33340
malus_domestica	MD02G1079600.v1.1 MD09G1193500.v1.1 MD15G1207100.v1.1
prunus_persica	Prupe.3G049900_v2.0.a1 Prupe.7G209600_v2.0.a1 Prupe.7G209600_v2.0.a1
pyrus_communis	pycom02g06340 pycom09g11000 pycom15g18350
rosa_chinensis	RchiOBHm_Chr2g0093391 RchiOBHm_Chr2g0143191
rosa_laevigata	RLG00000016395 RLG00000020012
rosa_multiflora	Rmu_sc0005227.1_g000015 Rmu_sc0032382.1_g000001 Rmu_ssc0000301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102060 Rroxscaffold_2G00148140
rosa_rugosa	Rorug02G0035100 Rorug02G0379000
rosa_samantha	Rh2AG431800 Rh2BG082700 Rh2BG440400 Rh2CG084700 Rh2CG417700 Rh2DG080400 Rh2DG450600
rosa_wichuraiana	Rw2G006520 Rw2G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1125
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccI	GTMKAC	2 cut(s)	159, 846
AccII	CGCG	1 cut(s)	418
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	6 cut(s)	260, 295, 381, 386, 488, 1087
AclWI	GGATC	3 cut(s)	737, 775, 784
AcsI	RAATTY	2 cut(s)	635, 1127
AcuI	CTGAAG	1 cut(s)	1467
AcvI	CACGTG	1 cut(s)	953
AfaI	GTAC	2 cut(s)	170, 440
AfiI	CCNNNNNNNGG	4 cut(s)	63, 541, 770, 797
AflIII	ACRYGT	2 cut(s)	952, 1486
AgsI	TTSAA	4 cut(s)	406, 551, 983, 1480
AjnI	CCWGG	5 cut(s)	457, 763, 790, 849, 1282
AluBI	AGCT	6 cut(s)	265, 484, 554, 897, 1145, 1468
AluI	AGCT	6 cut(s)	265, 484, 554, 897, 1145, 1468
Alw21I	GWGCWC	2 cut(s)	393, 675
Alw26I	GTCTC	3 cut(s)	47, 765, 1173
AlwI	GGATC	3 cut(s)	737, 775, 784
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	2 cut(s)	57, 266
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	5 cut(s)	61, 93, 233, 256, 1442
ApaI	GGGCCC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	635, 1127
AspLEI	GCGC	5 cut(s)	418, 420, 991, 1115, 1422
AspS9I	GGNCC	7 cut(s)	61, 94, 234, 256, 257, 718, 821
AsuC2I	CCSGG	2 cut(s)	58, 59
AsuHPI	GGTGA	2 cut(s)	414, 932
AsuII	TTCGAA	1 cut(s)	107
AvaI	CYCGRG	2 cut(s)	57, 266
AvaII	GGWCC	2 cut(s)	718, 821
BaeGI	GKGCMC	3 cut(s)	260, 858, 1311
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	857
BbrPI	CACGTG	1 cut(s)	953
Bbv12I	GWGCWC	2 cut(s)	393, 675
BccI	CCATC	6 cut(s)	314, 455, 791, 812, 1193, 1202
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	5 cut(s)	459, 765, 792, 851, 1284
BciVI	GTATCC	1 cut(s)	856
BcnI	CCSGG	2 cut(s)	58, 59
BcoDI	GTCTC	3 cut(s)	47, 765, 1173
BfaI	CTAG	2 cut(s)	894, 963
BfmI	CTRYAG	3 cut(s)	910, 1200, 1438
BfuI	GTATCC	1 cut(s)	856
BglI	GCCNNNNNGGC	2 cut(s)	101, 255
BlpI	GCTNAGC	1 cut(s)	123
Bme1390I	CCNGG	7 cut(s)	58, 59, 459, 765, 792, 851, 1284
Bme18I	GGWCC	2 cut(s)	718, 821
BmeT110I	CYCGRG	2 cut(s)	57, 266
BmgT120I	GGNCC	7 cut(s)	61, 94, 234, 256, 257, 718, 821
BmiI	GGNNCC	3 cut(s)	62, 257, 258
BmrFI	CCNGG	7 cut(s)	58, 59, 459, 765, 792, 851, 1284
BmsI	GCATC	5 cut(s)	740, 916, 937, 985, 1352
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	3 cut(s)	699, 747, 1155
Bpu1102I	GCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	1490
BpuMI	CCSGG	2 cut(s)	58, 59
BsaAI	YACGTR	1 cut(s)	953
BsaBI	GATNNNNATC	2 cut(s)	999, 1020
BsaI	GGTCTC	2 cut(s)	47, 1173
BsaJI	CCNNGG	8 cut(s)	57, 58, 78, 458, 791, 836, 850, 1352
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 541, 770, 797
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	4 cut(s)	212, 619, 1162, 1396
Bse3DI	GCAATG	2 cut(s)	654, 1406
Bse8I	GATNNNNATC	2 cut(s)	999, 1020
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	5 cut(s)	459, 765, 792, 851, 1284
BseDI	CCNNGG	8 cut(s)	57, 58, 78, 458, 791, 836, 850, 1352
BseGI	GGATG	6 cut(s)	454, 550, 802, 952, 1181, 1213
BseJI	GATNNNNATC	2 cut(s)	999, 1020
BseLI	CCNNNNNNNGG	4 cut(s)	63, 541, 770, 797
BseMI	GCAATG	2 cut(s)	654, 1406
BseMII	CTCAG	3 cut(s)	137, 300, 413
BseNI	ACTGG	4 cut(s)	212, 619, 1162, 1396
BsePI	GCGCGC	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	1269, 1466
BseSI	GKGCMC	3 cut(s)	260, 858, 1311
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	5 cut(s)	63, 95, 235, 258, 1444
BsiHKAI	GWGCWC	2 cut(s)	393, 675
BsiHKCI	CYCGRG	2 cut(s)	57, 266
BsiSI	CCGG	5 cut(s)	38, 58, 64, 250, 599
BslFI	GGGAC	3 cut(s)	176, 1328, 1417
BslI	CCNNNNNNNGG	4 cut(s)	63, 541, 770, 797
BsmAI	GTCTC	3 cut(s)	47, 765, 1173
BsmFI	GGGAC	3 cut(s)	176, 1328, 1417
BsmI	GAATGC	1 cut(s)	1345
BsnI	GGCC	5 cut(s)	63, 95, 235, 258, 1444
Bso31I	GGTCTC	2 cut(s)	47, 1173
BsoBI	CYCGRG	2 cut(s)	57, 266
Bsp119I	TTCGAA	1 cut(s)	107
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	5 cut(s)	260, 393, 675, 858, 1311
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
Bsp1720I	GCTNAGC	1 cut(s)	123
Bsp19I	CCATGG	1 cut(s)	1352
BspACI	CCGC	6 cut(s)	260, 295, 381, 386, 488, 1087
BspANI	GGCC	5 cut(s)	63, 95, 235, 258, 1444
BspCNI	CTCAG	3 cut(s)	136, 301, 412
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	62, 257, 258
BspMAI	CTGCAG	1 cut(s)	1204
BspPI	GGATC	3 cut(s)	737, 775, 784
BspQI	GCTCTTC	1 cut(s)	1458
BspT104I	TTCGAA	1 cut(s)	107
BspTNI	GGTCTC	2 cut(s)	47, 1173
BsrDI	GCAATG	2 cut(s)	654, 1406
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	4 cut(s)	212, 619, 1162, 1396
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	8 cut(s)	57, 58, 78, 458, 791, 836, 850, 1352
BssHII	GCGCGC	1 cut(s)	416
BssMI	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	3 cut(s)	78, 836, 1352
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	5 cut(s)	459, 765, 792, 851, 1284
Bst4CI	ACNGT	8 cut(s)	173, 524, 566, 697, 868, 1010, 1360, 1382
Bst6I	CTCTTC	2 cut(s)	1443, 1458
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstBAI	YACGTR	1 cut(s)	953
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	7 cut(s)	213, 260, 273, 293, 418, 931, 1302
BstDEI	CTNAG	4 cut(s)	123, 309, 399, 498
BstDSI	CCRYGG	1 cut(s)	1352
BstF5I	GGATG	6 cut(s)	454, 550, 802, 952, 1181, 1213
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	5 cut(s)	418, 420, 991, 1115, 1422
BstKTI	GATC	7 cut(s)	745, 770, 779, 1003, 1063, 1084, 1437
BstMAI	GTCTC	3 cut(s)	47, 765, 1173
BstMBI	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
BstNI	CCWGG	5 cut(s)	459, 765, 792, 851, 1284
BstNSI	RCATGY	3 cut(s)	1078, 1304, 1490
BstSCI	CCNGG	7 cut(s)	56, 57, 457, 763, 790, 849, 1282
BstSFI	CTRYAG	3 cut(s)	910, 1200, 1438
BstSLI	GKGCMC	3 cut(s)	260, 858, 1311
BstUI	CGCG	1 cut(s)	418
BstX2I	RGATCY	2 cut(s)	742, 767
BstYI	RGATCY	2 cut(s)	742, 767
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	5 cut(s)	63, 95, 235, 258, 1444
BtgI	CCRYGG	1 cut(s)	1352
BtsCI	GGATG	6 cut(s)	454, 550, 802, 952, 1181, 1213
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	6 cut(s)	182, 331, 702, 873, 1006, 1169
Cac8I	GCNNGC	7 cut(s)	213, 260, 273, 293, 418, 931, 1302
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	5 cut(s)	418, 420, 991, 1115, 1422
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	7 cut(s)	61, 94, 234, 256, 257, 718, 821
Cfr9I	CCCGGG	1 cut(s)	57
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	169, 439
CviAII	CATG	7 cut(s)	569, 1028, 1075, 1301, 1353, 1423, 1487
CviQI	GTAC	2 cut(s)	169, 439
DdeI	CTNAG	4 cut(s)	123, 309, 399, 498
DpnI	GATC	7 cut(s)	744, 769, 778, 1002, 1062, 1083, 1436
DpnII	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
DraI	TTTAAA	1 cut(s)	1218
Eam1104I	CTCTTC	2 cut(s)	1443, 1458
EarI	CTCTTC	2 cut(s)	1443, 1458
EciI	GGCGGA	1 cut(s)	1102
Eco130I	CCWWGG	3 cut(s)	78, 836, 1352
Eco147I	AGGCCT	1 cut(s)	1444
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	2 cut(s)	47, 1173
Eco47I	GGWCC	2 cut(s)	718, 821
Eco57I	CTGAAG	1 cut(s)	1467
Eco72I	CACGTG	1 cut(s)	953
Eco88I	CYCGRG	2 cut(s)	57, 266
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	5 cut(s)	457, 763, 790, 849, 1282
EcoT14I	CCWWGG	3 cut(s)	78, 836, 1352
EcoT22I	ATGCAT	1 cut(s)	1345
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	3 cut(s)	78, 836, 1352
FaeI	CATG	7 cut(s)	572, 1031, 1078, 1304, 1356, 1426, 1490
FaqI	GGGAC	3 cut(s)	176, 1328, 1417
FatI	CATG	7 cut(s)	568, 1027, 1074, 1300, 1352, 1422, 1486
FauI	CCCGC	1 cut(s)	267
FblI	GTMKAC	2 cut(s)	159, 846
FokI	GGATG	6 cut(s)	441, 557, 809, 959, 1168, 1220
FriOI	GRGCYC	1 cut(s)	260
FspBI	CTAG	2 cut(s)	894, 963
GlaI	GCGC	5 cut(s)	417, 419, 990, 1114, 1421
GsuI	CTGGAG	3 cut(s)	699, 747, 1155
HaeIII	GGCC	5 cut(s)	63, 95, 235, 258, 1444
HapII	CCGG	5 cut(s)	38, 58, 64, 250, 599
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	5 cut(s)	418, 420, 991, 1115, 1422
Hin1II	CATG	7 cut(s)	572, 1031, 1078, 1304, 1356, 1426, 1490
Hin6I	GCGC	5 cut(s)	416, 418, 989, 1113, 1420
HinP1I	GCGC	5 cut(s)	416, 418, 989, 1113, 1420
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	286, 474, 1021, 1090
HpaII	CCGG	5 cut(s)	38, 58, 64, 250, 599
HphI	GGTGA	2 cut(s)	414, 932
Hpy166II	GTNNAC	3 cut(s)	160, 469, 847
Hpy188I	TCNGA	5 cut(s)	310, 333, 479, 1348, 1375
Hpy188III	TCNNGA	6 cut(s)	527, 599, 623, 678, 716, 1172
Hpy8I	GTNNAC	3 cut(s)	160, 469, 847
Hpy99I	CGWCG	3 cut(s)	16, 161, 164
HpyAV	CCTTC	5 cut(s)	43, 112, 834, 1231, 1243
HpyCH4III	ACNGT	8 cut(s)	173, 524, 566, 697, 868, 1010, 1360, 1382
HpyCH4IV	ACGT	2 cut(s)	370, 952
HpyCH4V	TGCA	9 cut(s)	350, 632, 647, 833, 950, 1202, 1304, 1343, 1411
HpyF3I	CTNAG	4 cut(s)	123, 309, 399, 498
HpySE526I	ACGT	2 cut(s)	370, 952
Hsp92II	CATG	7 cut(s)	572, 1031, 1078, 1304, 1356, 1426, 1490
HspAI	GCGC	5 cut(s)	416, 418, 989, 1113, 1420
Kpn2I	TCCGGA	1 cut(s)	598
Kzo9I	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
LguI	GCTCTTC	1 cut(s)	1458
LmnI	GCTCC	2 cut(s)	388, 1252
LweI	GCATC	5 cut(s)	740, 916, 937, 985, 1352
MaeI	CTAG	2 cut(s)	894, 963
MaeII	ACGT	2 cut(s)	370, 952
MaeIII	GTNAC	2 cut(s)	920, 1482
MalI	GATC	7 cut(s)	744, 769, 778, 1002, 1062, 1083, 1436
MboI	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
MboII	GAAGA	9 cut(s)	55, 58, 127, 422, 445, 884, 995, 1460, 1475
MflI	RGATCY	2 cut(s)	742, 767
MhlI	GDGCHC	5 cut(s)	260, 393, 675, 858, 1311
MluCI	AATT	4 cut(s)	352, 635, 780, 1127
MmeI	TCCRAC	1 cut(s)	680
Mph1103I	ATGCAT	1 cut(s)	1345
MroI	TCCGGA	1 cut(s)	598
MseI	TTAA	2 cut(s)	786, 1217
MslI	CAYNNNNRTG	1 cut(s)	1338
MspA1I	CMGCKG	2 cut(s)	295, 383
MspI	CCGG	5 cut(s)	38, 58, 64, 250, 599
MspR9I	CCNGG	7 cut(s)	58, 59, 459, 765, 792, 851, 1284
Mva1269I	GAATGC	1 cut(s)	1345
MvaI	CCWGG	5 cut(s)	459, 765, 792, 851, 1284
MvnI	CGCG	1 cut(s)	418
NciI	CCSGG	2 cut(s)	58, 59
NcoI	CCATGG	1 cut(s)	1352
NdeII	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
NlaIII	CATG	7 cut(s)	572, 1031, 1078, 1304, 1356, 1426, 1490
NlaIV	GGNNCC	3 cut(s)	62, 257, 258
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	920, 1482
NsiI	ATGCAT	1 cut(s)	1345
NspI	RCATGY	3 cut(s)	1078, 1304, 1490
NspV	TTCGAA	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	1304
PaeR7I	CTCGAG	1 cut(s)	266
PauI	GCGCGC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	1444
PciI	ACATGT	1 cut(s)	1486
PciSI	GCTCTTC	1 cut(s)	1458
PctI	GAATGC	1 cut(s)	1345
PfeI	GAWTC	4 cut(s)	286, 474, 1021, 1090
PflMI	CCANNNNNTGG	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	763
PmaCI	CACGTG	1 cut(s)	953
PmlI	CACGTG	1 cut(s)	953
Ppu21I	YACGTR	1 cut(s)	953
PscI	ACATGT	1 cut(s)	1486
PsiI	TTATAA	1 cut(s)	1125
Psp6I	CCWGG	5 cut(s)	457, 763, 790, 849, 1282
PspCI	CACGTG	1 cut(s)	953
PspGI	CCWGG	5 cut(s)	457, 763, 790, 849, 1282
PspN4I	GGNNCC	3 cut(s)	62, 257, 258
PspOMI	GGGCCC	1 cut(s)	256
PspPI	GGNCC	7 cut(s)	61, 94, 234, 256, 257, 718, 821
PspXI	VCTCGAGB	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	1204
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	742, 767
PteI	GCGCGC	1 cut(s)	416
RsaI	GTAC	2 cut(s)	170, 440
RsaNI	GTAC	2 cut(s)	169, 439
RseI	CAYNNNNRTG	1 cut(s)	1338
SalI	GTCGAC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	1458
SaqAI	TTAA	2 cut(s)	786, 1217
Sau3AI	GATC	7 cut(s)	742, 767, 776, 1000, 1060, 1081, 1434
Sau96I	GGNCC	7 cut(s)	61, 94, 234, 256, 257, 718, 821
ScrFI	CCNGG	7 cut(s)	58, 59, 459, 765, 792, 851, 1284
SduI	GDGCHC	5 cut(s)	260, 393, 675, 858, 1311
SfaNI	GCATC	5 cut(s)	740, 916, 937, 985, 1352
SfcI	CTRYAG	3 cut(s)	910, 1200, 1438
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	107
SgrDI	CGTCGACG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	718, 821
SlaI	CTCGAG	1 cut(s)	266
SmaI	CCCGGG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	1338
SmlI	CTYRAG	2 cut(s)	266, 1469
SmoI	CTYRAG	2 cut(s)	266, 1469
SphI	GCATGC	1 cut(s)	1304
Sse9I	AATT	4 cut(s)	352, 635, 780, 1127
SseBI	AGGCCT	1 cut(s)	1444
SsiI	CCGC	6 cut(s)	260, 295, 381, 386, 488, 1087
SspMI	CTAG	2 cut(s)	894, 963
StuI	AGGCCT	1 cut(s)	1444
StyD4I	CCNGG	7 cut(s)	56, 57, 457, 763, 790, 849, 1282
StyI	CCWWGG	3 cut(s)	78, 836, 1352
TaaI	ACNGT	8 cut(s)	173, 524, 566, 697, 868, 1010, 1360, 1382
TaiI	ACGT	2 cut(s)	373, 955
TaqI	TCGA	3 cut(s)	107, 159, 267
TasI	AATT	4 cut(s)	352, 635, 780, 1127
TatI	WGTACW	2 cut(s)	168, 438
TauI	GCSGC	2 cut(s)	298, 383
TfiI	GAWTC	4 cut(s)	286, 474, 1021, 1090
Tru1I	TTAA	2 cut(s)	786, 1217
Tru9I	TTAA	2 cut(s)	786, 1217
TscAI	CASTG	6 cut(s)	182, 331, 702, 873, 1013, 1169
TseFI	GTSAC	2 cut(s)	920, 1482
Tsp45I	GTSAC	2 cut(s)	920, 1482
TspDTI	ATGAA	4 cut(s)	128, 423, 819, 1322
TspMI	CCCGGG	1 cut(s)	57
TspRI	CASTG	6 cut(s)	182, 331, 702, 873, 1013, 1169
Van91I	CCANNNNNTGG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	718, 821
XapI	RAATTY	2 cut(s)	635, 1127
XceI	RCATGY	3 cut(s)	1078, 1304, 1490
XhoI	CTCGAG	1 cut(s)	266
XmaI	CCCGGG	1 cut(s)	57
XmiI	GTMKAC	2 cut(s)	159, 846
XspI	CTAG	2 cut(s)	894, 963
Zsp2I	ATGCAT	1 cut(s)	1345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.