Rh2BG440400

Histone-binding protein RBBP4 or subunit C of CAF1 complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003346
Physical Location & Seq
Reverse (-)
62413166 .. 62419024
5859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG440400.1

Sequence Viewer

Length: 1287 bp
ATGTTGAGATGGGGACCGCAGCTAGACCAAGCTACTTACAAGAACCGTCAGCGTCTTTATCTTTCCGAACAGACCGATGGAAGTGTTCCAAATACCCTTGTCATTGCAAACTGTGAAGTTGTCAAACCTAGGGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCTCCTTTTGTAAAGAAGTATAAAACTATAATACATCCTGGAGAGGTGAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTGGCCACACACACTGACAGTCCTGATGTTCTCATTTGGGACATTGAGGCTCAACCTAATCGTCATGCTGTCCTGGGAGCTACAAATTCTCGCCCAGATCTGCTATTGACTGGACATCAAGATAATGCTGAATTTGCACTTGCTATGTGCCCCTCGGAACCCTTTGTACTCTCTGGAGGGAAGGACAAATCAGTGATTTTGTGGAGTATTCAAGATCATATCTCGTCTTTGGCATCAGATCCTGGGTCTGCAAGGTCTCCAGGATCTGGTGGTTCAAATGCTAAACATGCCTCTAAGGTTGGTGGGAGTAATGACAAACCCACAGACAGCCCTTCTGTTGAGCCACGAGGTATCTATCAAGGGCATGAGGATACTGTTGAAGATGTACAGTTCTGCCCATCTAGTGCGCAGGAGTTCTGCAGTGTAGGCGACGATTCTTGCCTCATACTATGGGATGCTAGATCTGGCAATAGTCCAGTTGTCAAGGTTGAGAAAGCTCATGATGCTGACCTTCATTGTGTAGATTGGAATCCTCATGATGTCAATCTCATTCTTACAGGGTCTGCGGATAAGACTGTTCGTATGTTTGACCGCCGGAATCTCACTTCTGGAGGAGTTGGATCACCCATTCATAAGTTTGAGGGCCACAACGAAGCTGTTCTCTGTGTTCAGTGGTCTCCTGACAAGTCCTCTGTCTTTGGAAGTTCTGCTGAGGATGGCCTATTGAACATCTGGGATCATGAAAAGATTGGTAAGAAGCAAGAATCTGTTGGATCAAAGCTGCCAAATGCTCCTCCTGCAGGATTGTTTTTCCGACATGCTGGTCATAGGGACAAGGTTGTTGATTTTCATTGGAATACATCTGATCCCTGGACAGTAGTAAGTGTTTCTGATGATTGTGGAAGTACTGGAGGAGGCGGTACACTCCAGATATGGCGAATGATTGATTTGATTTACAGGCCTGAGGAAGAGGTGCTGGCCGAGCTTGACAAGTTCAAATCTCATGTGTTGACATGCCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

428

Amino Acids

46.8

Weight (kDa)

5.61

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 197 - 337 7.9e-10 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 199 - 285 8.1e-09 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 206 - 245 7.9e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 206 - 336 2.4e-20 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 207 - 286 8.3e-06 WDR3 second beta-propeller domain
WDR55 PF24796 207 - 336 4.8e-08 WDR55
Beta-prop_EIPR1 PF23609 209 - 283 9.2e-10 EIPR1 beta-propeller
Beta-prop_EML_2 PF23414 222 - 342 3.4e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 228 - 334 9e-10 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 252 - 337 7.4e-11 Prp19 WD40 domain
Beta-prop_EIPR1 PF23609 252 - 335 1.9e-06 EIPR1 beta-propeller
Beta-prop_THOC3 PF25174 254 - 344 6.1e-13 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 256 - 337 1.5e-06 WDHD1 first WD40 domain
WD40 PF00400 294 - 333 1.4e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1083
Acc16I TGCGCA 1 cut(s) 669
AccB7I CCANNNNNTGG 1 cut(s) 527
AciI CCGC 4 cut(s) 17, 827, 853, 1179
AclWI GGATC 6 cut(s) 494, 532, 889, 1005, 1042, 1121
AcoI YGGCCR 2 cut(s) 264, 1239
AcsI RAATTY 2 cut(s) 346, 392
AfaI GTAC 4 cut(s) 429, 648, 1168, 1183
AfiI CCNNNNNNNGG 2 cut(s) 527, 1061
AgsI TTSAA 6 cut(s) 163, 473, 537, 641, 988, 1258
AjnI CCWGG 5 cut(s) 214, 333, 502, 520, 1130
AluBI AGCT 8 cut(s) 22, 32, 140, 341, 758, 917, 1042, 1246
AluI AGCT 8 cut(s) 22, 32, 140, 341, 758, 917, 1042, 1246
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 522, 942
AlwI GGATC 6 cut(s) 494, 532, 889, 1005, 1042, 1121
AlwNI CAGNNNCTG 3 cut(s) 503, 527, 824
AoxI GGCC 5 cut(s) 264, 904, 979, 1220, 1239
ApeKI GCWGC 4 cut(s) 19, 137, 140, 1042
ApoI RAATTY 2 cut(s) 346, 392
Asp700I GAANNNNTTC 1 cut(s) 918
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 14, 904
AsuHPI GGTGA 2 cut(s) 235, 876
AvaII GGWCC 1 cut(s) 14
AvrII CCTAGG 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 1224
BaeGI GKGCMC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 266
BauI CACGAG 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 4 cut(s) 31, 127, 149, 1029
BccI CCATC 4 cut(s) 3, 71, 667, 971
BciT130I CCWGG 5 cut(s) 216, 335, 504, 522, 1132
BciVI GTATCC 1 cut(s) 625
BcoDI GTCTC 2 cut(s) 522, 942
BfaI CTAG 4 cut(s) 23, 129, 663, 720
BfmI CTRYAG 3 cut(s) 141, 679, 1059
BfuI GTATCC 1 cut(s) 625
BglII AGATCT 2 cut(s) 358, 722
BisI GCNGC 4 cut(s) 20, 138, 141, 1043
BlnI CCTAGG 1 cut(s) 128
BlsI GCNGC 4 cut(s) 21, 139, 142, 1044
BmcAI AGTACT 1 cut(s) 1168
Bme1390I CCNGG 5 cut(s) 216, 335, 504, 522, 1132
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 14, 904
BmiI GGNNCC 2 cut(s) 15, 420
BmrFI CCNGG 5 cut(s) 216, 335, 504, 522, 1132
BmsI GCATC 3 cut(s) 503, 706, 754
BpmI CTGGAG 6 cut(s) 237, 456, 504, 891, 1172, 1191
Bpu10I CCTNAGC 1 cut(s) 972
BsaBI GATNNNNATC 2 cut(s) 789, 804
BsaI GGTCTC 2 cut(s) 522, 942
BsaJI CCNNGG 5 cut(s) 128, 334, 414, 503, 1130
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 1061
Bse1I ACTGG 3 cut(s) 376, 737, 1174
Bse21I CCTNAGG 1 cut(s) 1224
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 2 cut(s) 789, 804
BseBI CCWGG 5 cut(s) 216, 335, 504, 522, 1132
BseDI CCNNGG 5 cut(s) 128, 334, 414, 503, 1130
BseGI GGATG 3 cut(s) 211, 721, 982
BseJI GATNNNNATC 2 cut(s) 789, 804
BseLI CCNNNNNNNGG 2 cut(s) 527, 1061
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 963, 1215
BseNI ACTGG 3 cut(s) 376, 737, 1174
BseRI GAGGAG 3 cut(s) 888, 1044, 1188
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 4 cut(s) 31, 127, 149, 1029
BshFI GGCC 5 cut(s) 266, 906, 981, 1222, 1241
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 856
BslFI GGGAC 3 cut(s) 27, 314, 1106
BslI CCNNNNNNNGG 2 cut(s) 527, 1061
BsmAI GTCTC 2 cut(s) 522, 942
BsmFI GGGAC 3 cut(s) 27, 314, 1106
BsnI GGCC 5 cut(s) 266, 906, 981, 1222, 1241
Bso31I GGTCTC 2 cut(s) 522, 942
Bsp1286I GDGCHC 2 cut(s) 150, 413
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
BspACI CCGC 4 cut(s) 17, 827, 853, 1179
BspANI GGCC 5 cut(s) 266, 906, 981, 1222, 1241
BspCNI CTCAG 2 cut(s) 964, 1216
BspHI TCATGA 3 cut(s) 760, 796, 1000
BspLI GGNNCC 2 cut(s) 15, 420
BspMAI CTGCAG 3 cut(s) 145, 683, 1063
BspPI GGATC 6 cut(s) 494, 532, 889, 1005, 1042, 1121
BspTNI GGTCTC 2 cut(s) 522, 942
BsrDI GCAATG 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 3 cut(s) 376, 737, 1174
BssECI CCNNGG 5 cut(s) 128, 334, 414, 503, 1130
BssMI GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 5 cut(s) 216, 335, 504, 522, 1132
Bst4CI ACNGT 8 cut(s) 47, 113, 159, 281, 637, 651, 838, 1138
Bst6I CTCTTC 1 cut(s) 1224
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 175, 1239
BstDEI CTNAG 3 cut(s) 555, 972, 1224
BstENI CCTNNNNNAGG 1 cut(s) 1059
BstF5I GGATG 3 cut(s) 211, 721, 982
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 9 cut(s) 361, 478, 502, 527, 725, 884, 1000, 1037, 1129
BstMAI GTCTC 2 cut(s) 522, 942
BstMBI GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 395, 548, 687, 764, 1058, 1243
BstNI CCWGG 5 cut(s) 216, 335, 504, 522, 1132
BstNSI RCATGY 3 cut(s) 551, 1082, 1278
BstSCI CCNGG 5 cut(s) 214, 333, 502, 520, 1130
BstSFI CTRYAG 3 cut(s) 141, 679, 1059
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 4 cut(s) 31, 127, 149, 1029
BstX2I RGATCY 4 cut(s) 358, 499, 524, 722
BstYI RGATCY 4 cut(s) 358, 499, 524, 722
Bsu36I CCTNAGG 1 cut(s) 1224
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 5 cut(s) 266, 906, 981, 1222, 1241
BtsCI GGATG 3 cut(s) 211, 721, 982
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 4 cut(s) 273, 459, 688, 938
Cac8I GCNNGC 2 cut(s) 175, 1239
CaiI CAGNNNCTG 3 cut(s) 503, 527, 824
CciI TCATGA 3 cut(s) 760, 796, 1000
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 14, 904
CseI GACGC 1 cut(s) 41
Csp6I GTAC 4 cut(s) 428, 647, 1167, 1182
CviAII CATG 9 cut(s) 326, 548, 626, 761, 797, 1001, 1079, 1265, 1275
CviQI GTAC 4 cut(s) 428, 647, 1167, 1182
DdeI CTNAG 3 cut(s) 555, 972, 1224
DpnI GATC 9 cut(s) 360, 477, 501, 526, 724, 883, 999, 1036, 1128
DpnII GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
DrdI GACNNNNNNGTC 1 cut(s) 1083
DseDI GACNNNNNNGTC 1 cut(s) 1083
EaeI YGGCCR 2 cut(s) 264, 1239
Eam1104I CTCTTC 1 cut(s) 1224
EarI CTCTTC 1 cut(s) 1224
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 1222
Eco31I GGTCTC 2 cut(s) 522, 942
Eco47I GGWCC 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 1224
EcoNI CCTNNNNNAGG 1 cut(s) 1059
EcoRII CCWGG 5 cut(s) 214, 333, 502, 520, 1130
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 9 cut(s) 329, 551, 629, 764, 800, 1004, 1082, 1268, 1278
FaqI GGGAC 3 cut(s) 27, 314, 1106
FatI CATG 9 cut(s) 325, 547, 625, 760, 796, 1000, 1078, 1264, 1274
Fnu4HI GCNGC 4 cut(s) 20, 138, 141, 1043
FokI GGATG 3 cut(s) 198, 728, 989
Fsp4HI GCNGC 4 cut(s) 20, 138, 141, 1043
FspBI CTAG 4 cut(s) 23, 129, 663, 720
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 1 cut(s) 669
GluI GCNGC 4 cut(s) 20, 138, 141, 1043
GsuI CTGGAG 6 cut(s) 237, 456, 504, 891, 1172, 1191
HaeIII GGCC 5 cut(s) 266, 906, 981, 1222, 1241
HapII CCGG 1 cut(s) 856
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 670
Hin1II CATG 9 cut(s) 329, 551, 629, 764, 800, 1004, 1082, 1268, 1278
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 1272
HindII GTYRAC 1 cut(s) 1272
HinfI GANTC 5 cut(s) 231, 695, 790, 859, 1025
HpaII CCGG 1 cut(s) 856
HphI GGTGA 2 cut(s) 235, 876
Hpy166II GTNNAC 3 cut(s) 226, 1184, 1272
Hpy188I TCNGA 6 cut(s) 67, 418, 499, 1076, 1126, 1153
Hpy8I GTNNAC 3 cut(s) 226, 1184, 1272
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 3 cut(s) 436, 603, 782
HpyCH4III ACNGT 8 cut(s) 47, 113, 159, 281, 637, 651, 838, 1138
HpyCH4V TGCA 7 cut(s) 107, 137, 143, 398, 512, 681, 1061
HpyF10VI GCNNNNNNNGC 6 cut(s) 395, 548, 687, 764, 1058, 1243
HpyF3I CTNAG 3 cut(s) 555, 972, 1224
Hsp92II CATG 9 cut(s) 329, 551, 629, 764, 800, 1004, 1082, 1268, 1278
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
LmnI GCTCC 2 cut(s) 338, 1057
Lsp1109I GCAGC 4 cut(s) 31, 127, 149, 1029
LweI GCATC 3 cut(s) 503, 706, 754
MaeI CTAG 4 cut(s) 23, 129, 663, 720
MalI GATC 9 cut(s) 360, 477, 501, 526, 724, 883, 999, 1036, 1128
MboI GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
MboII GAAGA 3 cut(s) 179, 653, 1241
MflI RGATCY 4 cut(s) 358, 499, 524, 722
MhlI GDGCHC 2 cut(s) 150, 413
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 2 cut(s) 346, 392
MluNI TGGCCA 1 cut(s) 266
MmeI TCCRAC 3 cut(s) 859, 1012, 1099
Mox20I TGGCCA 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 918
MscI TGGCCA 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 856
MspR9I CCNGG 5 cut(s) 216, 335, 504, 522, 1132
MvaI CCWGG 5 cut(s) 216, 335, 504, 522, 1132
MwoI GCNNNNNNNGC 6 cut(s) 395, 548, 687, 764, 1058, 1243
NdeII GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
NlaIII CATG 9 cut(s) 329, 551, 629, 764, 800, 1004, 1082, 1268, 1278
NlaIV GGNNCC 2 cut(s) 15, 420
NmeAIII GCCGAG 1 cut(s) 1267
NsbI TGCGCA 1 cut(s) 669
NspI RCATGY 3 cut(s) 551, 1082, 1278
PagI TCATGA 3 cut(s) 760, 796, 1000
PceI AGGCCT 1 cut(s) 1222
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 5 cut(s) 231, 695, 790, 859, 1025
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 2 cut(s) 214, 520
PkrI GCNGC 4 cut(s) 21, 139, 142, 1044
Psp6I CCWGG 5 cut(s) 214, 333, 502, 520, 1130
PspGI CCWGG 5 cut(s) 214, 333, 502, 520, 1130
PspN4I GGNNCC 2 cut(s) 15, 420
PspPI GGNCC 2 cut(s) 14, 904
PsrI GAACNNNNNNTAC 2 cut(s) 411, 443
PstI CTGCAG 3 cut(s) 145, 683, 1063
PstNI CAGNNNCTG 3 cut(s) 503, 527, 824
PsuI RGATCY 4 cut(s) 358, 499, 524, 722
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 4 cut(s) 429, 648, 1168, 1183
RsaNI GTAC 4 cut(s) 428, 647, 1167, 1182
SatI GCNGC 4 cut(s) 20, 138, 141, 1043
Sau3AI GATC 9 cut(s) 358, 475, 499, 524, 722, 881, 997, 1034, 1126
Sau96I GGNCC 2 cut(s) 14, 904
SbfI CCTGCAGG 1 cut(s) 1063
ScaI AGTACT 1 cut(s) 1168
ScrFI CCNGG 5 cut(s) 216, 335, 504, 522, 1132
SdaI CCTGCAGG 1 cut(s) 1063
SduI GDGCHC 2 cut(s) 150, 413
SfaNI GCATC 3 cut(s) 503, 706, 754
SfcI CTRYAG 3 cut(s) 141, 679, 1059
SinI GGWCC 1 cut(s) 14
Sse8387I CCTGCAGG 1 cut(s) 1063
Sse9I AATT 2 cut(s) 346, 392
SseBI AGGCCT 1 cut(s) 1222
SsiI CCGC 4 cut(s) 17, 827, 853, 1179
SspMI CTAG 4 cut(s) 23, 129, 663, 720
StuI AGGCCT 1 cut(s) 1222
StyD4I CCNGG 5 cut(s) 214, 333, 502, 520, 1130
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 8 cut(s) 47, 113, 159, 281, 637, 651, 838, 1138
TaqII GACCGA 1 cut(s) 89
TasI AATT 2 cut(s) 346, 392
TatI WGTACW 3 cut(s) 427, 646, 1166
TfiI GAWTC 5 cut(s) 231, 695, 790, 859, 1025
TscAI CASTG 4 cut(s) 280, 459, 688, 938
TseI GCWGC 4 cut(s) 19, 137, 140, 1042
TspDTI ATGAA 5 cut(s) 180, 764, 881, 1017, 1100
TspRI CASTG 4 cut(s) 280, 459, 688, 938
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 1059
XapI RAATTY 2 cut(s) 346, 392
XceI RCATGY 3 cut(s) 551, 1082, 1278
XmaJI CCTAGG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 4 cut(s) 23, 129, 663, 720
ZrmI AGTACT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.