Rw2G006510

Transmembrane protein 258-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015445
Physical Location & Seq
Forward (+)
6287923 .. 6289099
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006510.1

Sequence Viewer

Length: 240 bp
ATGCAACTTGTTGTCTCTAAATACACACTGAGCTTCGTCTTCCTCACTTTCCCGAGTCCTCCAACCAAAACCAGAGCGCGTCAACGACTTTCCAACACCTCTCTTCTTCAATGCTATGAAGCGACCTCTTCCAGGAAAAGCCGCAGTCTTGCTAAGGAGCTTATTACAGGAACTGTGGCCTCTGTCTTCTTGGGGTTTGGATCCTTGTTCTTGCTGCTTGCTTCGGGAGTTTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ost5

Protein Analysis

79

Amino Acids

8.68

Weight (kDa)

10.38

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ost5 PF05251 33 - 79 1.1e-14 Oligosaccharyltransferase subunit 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29735 AT4G29735
fragaria_vesca FvH4_1g07510
malus_domestica MD02G1079700.v1.1 MD15G1207400.v1.1
prunus_persica Prupe.7G209400_v2.0.a1
pyrus_communis pycom02g06350
rosa_chinensis RchiOBHm_Chr2g0093401
rosa_multiflora Rmu_sc0005227.1_g000016 Rmu_sc0032382.1_g000002
rosa_rugosa Rorug02G0035100
rosa_samantha Rh2AG081500 Rh2BG082800 Rh2CG084800 Rh2DG080500
rosa_wichuraiana Rw2G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 79
AciI CCGC 1 cut(s) 142
AclWI GGATC 2 cut(s) 195, 208
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 2 cut(s) 33, 160
AluI AGCT 2 cut(s) 33, 160
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 2 cut(s) 195, 208
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 52
BamHI GGATCC 1 cut(s) 200
BbsI GAAGAC 2 cut(s) 31, 178
BbvI GCAGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 19
BisI GCNGC 2 cut(s) 142, 215
BlsI GCNGC 2 cut(s) 143, 216
Bme1390I CCNGG 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 31, 178
Bpu10I CCTNAGC 1 cut(s) 153
BsaXI ACNNNNNCTCC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 52
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 2 cut(s) 195, 208
BssMI GATC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 108, 133
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 29, 153
BstENI CCTNNNNNAGG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 2 cut(s) 31, 178
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 79
CseI GACGC 1 cut(s) 68
CviJI RGCY 4 cut(s) 33, 141, 160, 179
CviKI_1 RGCY 4 cut(s) 33, 141, 160, 179
DdeI CTNAG 2 cut(s) 29, 153
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 108, 133
EarI CTCTTC 2 cut(s) 108, 133
Eco88I CYCGRG 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 131
FaiI YATR 2 cut(s) 117, 234
Fnu4HI GCNGC 2 cut(s) 142, 215
Fsp4HI GCNGC 2 cut(s) 142, 215
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 142, 215
HaeIII GGCC 1 cut(s) 179
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HinfI GANTC 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 52, 225
Hpy8I GTNNAC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 29, 153
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 85, 118, 145, 153
Lsp1109I GCAGC 1 cut(s) 201
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 5 cut(s) 31, 95, 98, 120, 178
MflI RGATCY 1 cut(s) 200
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 2 cut(s) 86, 117
MnlI CCTC 5 cut(s) 53, 69, 109, 136, 190
MseI TTAA 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 79
NdeII GATC 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 2 cut(s) 143, 216
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 200
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 2 cut(s) 142, 215
Sau3AI GATC 1 cut(s) 200
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 133
SetI ASST 4 cut(s) 35, 101, 128, 162
SsiI CCGC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 175
TauI GCSGC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 33
XagI CCTNNNNNAGG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.