MD15G1207400.v1.1

Transmembrane protein 258-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015445
Physical Location & Seq
Reverse (-)
16485700 .. 16487265
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1207400.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGCTCCGAAGGCAATTACCAGTCCCGTGCCGATCACGTGGTACCCGACCCTCGCCGTCATGATGGTCTCCCTCGGCCTCCTCTTCACCGCTTCCTTCTTCATCCATGCGGCGACCATTTCCAGGAAAAACCGCAGTCTTGCGAAGGAAATTACGACAGGAACATTGGCTTCGTTCTTTTTGGGTTTCGGAACCTTGTACGTACTGCTTGCATCGGGCGTTTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ost5

Protein Analysis

77

Amino Acids

8.17

Weight (kDa)

9.99

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ost5 PF05251 5 - 76 1.7e-22 Oligosaccharyltransferase subunit 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29735 AT4G29735
fragaria_vesca FvH4_1g07510
malus_domestica MD02G1079700.v1.1 MD15G1207400.v1.1
prunus_persica Prupe.7G209400_v2.0.a1
pyrus_communis pycom02g06350
rosa_chinensis RchiOBHm_Chr2g0093401
rosa_multiflora Rmu_sc0005227.1_g000016 Rmu_sc0032382.1_g000002
rosa_rugosa Rorug02G0035100
rosa_samantha Rh2AG081500 Rh2BG082800 Rh2CG084800 Rh2DG080500
rosa_wichuraiana Rw2G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AciI CCGC 3 cut(s) 90, 110, 133
AcvI CACGTG 1 cut(s) 39
AfaI GTAC 3 cut(s) 44, 200, 204
AfiI CCNNNNNNNGG 1 cut(s) 123
AjnI CCWGG 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 73
AoxI GGCC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 79
BanI GGYRCC 1 cut(s) 42
BbrPI CACGTG 1 cut(s) 39
BccI CCATC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 3 cut(s) 6, 44, 193
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 221
BsaAI YACGTR 2 cut(s) 39, 202
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 42
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 9
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 3 cut(s) 90, 110, 133
BspANI GGCC 1 cut(s) 78
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 6, 44, 193
BspT107I GGYRCC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 89
BstBAI YACGTR 2 cut(s) 39, 202
BstC8I GCNNGC 1 cut(s) 210
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstSNI TACGTA 1 cut(s) 202
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 210
CciI TCATGA 1 cut(s) 60
Csp6I GTAC 3 cut(s) 43, 199, 203
CviAII CATG 2 cut(s) 61, 107
CviJI RGCY 3 cut(s) 5, 78, 170
CviKI_1 RGCY 3 cut(s) 5, 78, 170
CviQI GTAC 3 cut(s) 43, 199, 203
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco105I TACGTA 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 64, 110
FaiI YATR 3 cut(s) 62, 108, 225
FaqI GGGAC 1 cut(s) 9
FatI CATG 2 cut(s) 60, 106
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 2 cut(s) 64, 110
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 9, 191, 230
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 4, 106, 139
HpyCH4IV ACGT 2 cut(s) 38, 201
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 38, 201
Hsp92II CATG 2 cut(s) 64, 110
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 34, 109, 136, 144
LweI GCATC 1 cut(s) 221
MaeII ACGT 2 cut(s) 38, 201
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 76, 91
MluCI AATT 2 cut(s) 15, 150
MnlI CCTC 4 cut(s) 62, 83, 89, 92
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 33
NlaIII CATG 2 cut(s) 64, 110
NlaIV GGNNCC 3 cut(s) 6, 44, 193
NmeAIII GCCGAG 1 cut(s) 54
PagI TCATGA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 1 cut(s) 112
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
Ppu21I YACGTR 2 cut(s) 39, 202
Psp6I CCWGG 1 cut(s) 122
PspCI CACGTG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 6, 44, 193
RsaI GTAC 3 cut(s) 44, 200, 204
RsaNI GTAC 3 cut(s) 43, 199, 203
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 124
SetI ASST 3 cut(s) 41, 197, 204
SfaNI GCATC 1 cut(s) 221
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 2 cut(s) 15, 150
SsiI CCGC 3 cut(s) 90, 110, 133
StyD4I CCNGG 1 cut(s) 122
TaiI ACGT 2 cut(s) 41, 204
TasI AATT 2 cut(s) 15, 150
TauI GCSGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.