FvH4_1g07510

Transmembrane protein 258-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015445
Physical Location & Seq
Reverse (-)
3993197 .. 3994603
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07510.t1

Sequence Viewer

Length: 231 bp
ATGGCTCCGAAGCCCATCACCAGTCCCGTGCCGGACGCGTGGTACCCAACCCTAGCCGTCGTCATGCTCTCCCTCGGCCTCCTCTTCACCGCTTCCTTCTTCATCTATGAAGCAACCTCGTCCAGGAAAACCCGCAGTCTTGCTAAGGAGCTTACTACGGGAACTGTGGCCTCTCTCTTCTTGGGTTTTGGATCCTTGTTCTTGCTGCTTGCTTCGGGTGTTTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ost5

Protein Analysis

77

Amino Acids

8.13

Weight (kDa)

9.3

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ost5 PF05251 4 - 76 5.3e-28 Oligosaccharyltransferase subunit 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29735 AT4G29735
fragaria_vesca FvH4_1g07510
malus_domestica MD02G1079700.v1.1 MD15G1207400.v1.1
prunus_persica Prupe.7G209400_v2.0.a1
pyrus_communis pycom02g06350
rosa_chinensis RchiOBHm_Chr2g0093401
rosa_multiflora Rmu_sc0005227.1_g000016 Rmu_sc0032382.1_g000002
rosa_rugosa Rorug02G0035100
rosa_samantha Rh2AG081500 Rh2BG082800 Rh2CG084800 Rh2DG080500
rosa_wichuraiana Rw2G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 90, 133
AclWI GGATC 2 cut(s) 186, 199
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 123
AflIII ACRYGT 1 cut(s) 36
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 2 cut(s) 186, 199
AoxI GGCC 2 cut(s) 76, 168
ApeKI GCWGC 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 10, 79
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 3 cut(s) 6, 44, 193
BmrFI CCNGG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 78, 170
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 9
BsnI GGCC 2 cut(s) 78, 170
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 2 cut(s) 90, 133
BspANI GGCC 2 cut(s) 78, 170
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 6, 44, 193
BspPI GGATC 2 cut(s) 186, 199
BspT107I GGYRCC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 89, 182
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 78, 170
Cac8I GCNNGC 1 cut(s) 210
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 5, 13, 56, 78, 151, 170
CviKI_1 RGCY 6 cut(s) 5, 13, 56, 78, 151, 170
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 89, 182
EarI CTCTTC 2 cut(s) 89, 182
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 108, 225
FaqI GGGAC 1 cut(s) 9
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 78, 170
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 44
Hin1II CATG 1 cut(s) 67
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 10, 79
Hpy188I TCNGA 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 67
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 10, 148
LpnPI CCDG 4 cut(s) 34, 45, 109, 136
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 1 cut(s) 53
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 3 cut(s) 76, 91, 169
MflI RGATCY 1 cut(s) 191
MluI ACGCGT 1 cut(s) 36
MnlI CCTC 5 cut(s) 83, 89, 92, 127, 181
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 38
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 3 cut(s) 6, 44, 193
NmeAIII GCCGAG 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 6, 44, 193
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 124
SetI ASST 2 cut(s) 119, 153
SsiI CCGC 2 cut(s) 90, 133
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 166
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 91, 123
XagI CCTNNNNNAGG 1 cut(s) 121
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.