AT4G29960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015199
Physical Location & Seq
Reverse (-)
14660567 .. 14662426
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29960.1

Sequence Viewer

Length: 876 bp
ATGACGGAAGAACCAGAGAAGGTGTCTTCTTCAGTATTACATCAACCTTCTGGTGATAAGAAACCTGAAGATGTTGGGATCAAACCTCAGGATCCAGCGTCTTCTTCTGGGTTTCGAGCTTATCCTAATGGTGATTCTCCAATGTACCCGGTTTTTTATCCGGGTCTTGTTCCCGGATCCAATCCTGTACAGTACGAGGAACAAATGAACCGTGGAGCTGGGATCTATGCGGTTCCTGTTCATCAATTTGGAGGACATGTCGCTGGTCTTCCCTCAAATTATCTTATCCCTCTCACTTACAATGTTCCAACGACTAGACCAAATAATGAAGCTGAGACTGGGGGAGAGAATCAAGCGCAAGCTGGGCAGGGTCAGCAGCAGCAGCTACCTGCAAATCAAAGGCATGTTGTGGAAAGGAGATTTCAGATCGCGTTTCAGCTTGATTTGTTTCTCATACTCAAGCTTGCTGCTGTTATCTTTTTGTTCAACCAAGATGGATCAAGACAAAGGCTTGCTGTTCTTGTGATTTTCGCTACCATAATTTACTTATACCAAACTGGAGCTCTTGCACCGTTTGTGCGATGGCTCTCACAAGGTATGCATAGAGCAGCAGTACCACCTGCTCGACCACATAGACCTGCTGTTAGAGCTGATAATGATCCCGCAGCTGCAGTTCCACTAAACGAAAATGCTGTTCTCGAGGGAGAAGAGAATGAAGCTGATAACGGTAACCGAGCAAGAGCAAATGCAAATGAAAATGAAAACGTTGACGCAGGAAACCAAGGGAATCAATGGTGGGGGATAGTGAAAGAGATTCAGATGATAGTGTTCGGCTTCATAACTTCATTACTCCCTGGTTTTCACAACATAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.9

Weight (kDa)

5.41

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
Acc36I ACCTGC 3 cut(s) 397, 628, 646
AccII CGCG 1 cut(s) 431
AciI CCGC 2 cut(s) 230, 663
AclI AACGTT 1 cut(s) 765
AclWI GGATC 8 cut(s) 86, 86, 99, 171, 184, 230, 505, 653
AcuI CTGAAG 2 cut(s) 15, 87
AfaI GTAC 4 cut(s) 146, 189, 194, 615
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 1 cut(s) 853
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 8 cut(s) 86, 86, 99, 171, 184, 230, 505, 653
Ama87I CYCGRG 1 cut(s) 698
ApeKI GCWGC 7 cut(s) 376, 379, 382, 467, 608, 665, 668
AspLEI GCGC 1 cut(s) 358
AsuC2I CCSGG 3 cut(s) 149, 162, 174
AsuHPI GGTGA 2 cut(s) 65, 143
AvaI CYCGRG 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 87
BamHI GGATCC 2 cut(s) 91, 176
BanII GRGCYC 1 cut(s) 565
BbsI GAAGAC 3 cut(s) 18, 93, 260
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 7 cut(s) 388, 391, 394, 454, 620, 655, 677
BccI CCATC 2 cut(s) 488, 576
BciT130I CCWGG 1 cut(s) 855
BcnI CCSGG 3 cut(s) 149, 162, 174
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 669
BfuAI ACCTGC 3 cut(s) 397, 628, 646
BisI GCNGC 7 cut(s) 377, 380, 383, 468, 609, 666, 669
BlsI GCNGC 7 cut(s) 378, 381, 384, 469, 610, 667, 670
Bme1390I CCNGG 4 cut(s) 149, 162, 174, 855
BmeT110I CYCGRG 1 cut(s) 698
BmiI GGNNCC 3 cut(s) 93, 178, 234
BmrFI CCNGG 4 cut(s) 149, 162, 174, 855
BmrI ACTGGG 1 cut(s) 348
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 3 cut(s) 18, 93, 260
BpmI CTGGAG 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 3 cut(s) 149, 162, 174
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 3 cut(s) 211, 781, 853
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bse1I ACTGG 2 cut(s) 343, 562
Bse21I CCTNAGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 3 cut(s) 211, 781, 853
BseJI GATNNNNATC 1 cut(s) 657
BseMII CTCAG 2 cut(s) 101, 324
BseNI ACTGG 2 cut(s) 343, 562
BseXI GCAGC 7 cut(s) 388, 391, 394, 454, 620, 655, 677
BseYI CCCAGC 2 cut(s) 218, 362
Bsh1236I CGCG 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 3 cut(s) 149, 161, 174
BsmAI GTCTC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
BspACI CCGC 2 cut(s) 230, 663
BspCNI CTCAG 2 cut(s) 100, 325
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 3 cut(s) 93, 178, 234
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 3 cut(s) 397, 628, 646
BspPI GGATC 8 cut(s) 86, 86, 99, 171, 184, 230, 505, 653
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 2 cut(s) 343, 562
BssECI CCNNGG 3 cut(s) 211, 781, 853
BssMI GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
BssT1I CCWWGG 1 cut(s) 781
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 4 cut(s) 192, 212, 573, 728
Bst6I CTCTTC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 360, 465, 513
BstDEI CTNAG 2 cut(s) 87, 333
BstDSI CCRYGG 1 cut(s) 211
BstEII GGTNACC 1 cut(s) 728
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 7 cut(s) 81, 94, 179, 225, 429, 500, 661
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
BstMWI GCNNNNNNNGC 4 cut(s) 364, 373, 382, 647
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 260, 407
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 4 cut(s) 147, 160, 172, 853
BstSFI CTRYAG 1 cut(s) 669
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 7 cut(s) 388, 391, 394, 454, 620, 655, 677
BstV2I GAAGAC 3 cut(s) 18, 93, 260
BstX2I RGATCY 3 cut(s) 91, 176, 222
BstYI RGATCY 3 cut(s) 91, 176, 222
Bsu36I CCTNAGG 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 595
BveI ACCTGC 3 cut(s) 397, 628, 646
Cac8I GCNNGC 3 cut(s) 360, 465, 513
CfoI GCGC 1 cut(s) 358
CseI GACGC 2 cut(s) 87, 779
Csp6I GTAC 4 cut(s) 145, 188, 193, 614
CviAII CATG 2 cut(s) 257, 404
CviQI GTAC 4 cut(s) 145, 188, 193, 614
DdeI CTNAG 2 cut(s) 87, 333
DpnI GATC 7 cut(s) 80, 93, 178, 224, 428, 499, 660
DpnII GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Ecl136II GAGCTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 563
Eco57I CTGAAG 2 cut(s) 15, 87
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 698
Eco91I GGTNACC 1 cut(s) 728
EcoICRI GAGCTC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 781
FaeI CATG 2 cut(s) 260, 407
FatI CATG 2 cut(s) 256, 403
FauI CCCGC 1 cut(s) 670
Fnu4HI GCNGC 7 cut(s) 377, 380, 383, 468, 609, 666, 669
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 7 cut(s) 377, 380, 383, 468, 609, 666, 669
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 357
GluI GCNGC 7 cut(s) 377, 380, 383, 468, 609, 666, 669
GsaI CCCAGC 2 cut(s) 222, 366
GsuI CTGGAG 1 cut(s) 579
HapII CCGG 3 cut(s) 149, 161, 174
HgaI GACGC 2 cut(s) 87, 779
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 260, 407
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 4 cut(s) 134, 349, 787, 814
HpaII CCGG 3 cut(s) 149, 161, 174
HphI GGTGA 2 cut(s) 65, 143
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 2 cut(s) 426, 819
Hpy188III TCNNGA 3 cut(s) 89, 501, 698
Hpy8I GTNNAC 1 cut(s) 769
HpyAV CCTTC 2 cut(s) 13, 57
HpyCH4III ACNGT 4 cut(s) 192, 212, 573, 728
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 5 cut(s) 392, 569, 601, 671, 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 364, 373, 382, 647
HpyF3I CTNAG 2 cut(s) 87, 333
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 2 cut(s) 260, 407
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
LmnI GCTCC 2 cut(s) 215, 560
Lsp1109I GCAGC 7 cut(s) 388, 391, 394, 454, 620, 655, 677
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 1 cut(s) 728
MalI GATC 7 cut(s) 80, 93, 178, 224, 428, 499, 660
MboI GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
MboII GAAGA 8 cut(s) 18, 20, 21, 80, 93, 96, 260, 719
MflI RGATCY 3 cut(s) 91, 176, 222
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 3 cut(s) 245, 277, 540
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 6 cut(s) 96, 190, 245, 283, 300, 694
Mph1103I ATGCAT 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 3 cut(s) 149, 161, 174
MspR9I CCNGG 4 cut(s) 149, 162, 174, 855
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 4 cut(s) 364, 373, 382, 647
NciI CCSGG 3 cut(s) 149, 162, 174
NdeII GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
NlaIII CATG 2 cut(s) 260, 407
NlaIV GGNNCC 3 cut(s) 93, 178, 234
NsiI ATGCAT 1 cut(s) 603
NspI RCATGY 2 cut(s) 260, 407
PaeR7I CTCGAG 1 cut(s) 698
PaqCI CACCTGC 1 cut(s) 628
PciI ACATGT 1 cut(s) 256
PfeI GAWTC 4 cut(s) 134, 349, 787, 814
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 7 cut(s) 378, 381, 384, 469, 610, 667, 670
PscI ACATGT 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 565
Psp1406I AACGTT 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 853
PspEI GGTNACC 1 cut(s) 728
PspFI CCCAGC 2 cut(s) 218, 362
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 3 cut(s) 93, 178, 234
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 3 cut(s) 91, 176, 222
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 4 cut(s) 146, 189, 194, 615
RsaNI GTAC 4 cut(s) 145, 188, 193, 614
SacI GAGCTC 1 cut(s) 565
SatI GCNGC 7 cut(s) 377, 380, 383, 468, 609, 666, 669
Sau3AI GATC 7 cut(s) 78, 91, 176, 222, 426, 497, 658
ScrFI CCNGG 4 cut(s) 149, 162, 174, 855
SduI GDGCHC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 669
Sfr274I CTCGAG 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 698
SmlI CTYRAG 2 cut(s) 458, 698
SmoI CTYRAG 2 cut(s) 458, 698
Sse9I AATT 3 cut(s) 245, 277, 540
SsiI CCGC 2 cut(s) 230, 663
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 565
StyD4I CCNGG 4 cut(s) 147, 160, 172, 853
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 4 cut(s) 192, 212, 573, 728
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 115, 625, 699
TasI AATT 3 cut(s) 245, 277, 540
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 4 cut(s) 134, 349, 787, 814
TseI GCWGC 7 cut(s) 376, 379, 382, 467, 608, 665, 668
TspDTI ATGAA 8 cut(s) 221, 230, 342, 729, 768, 774, 826, 834
TspGWI ACGGA 1 cut(s) 20
XceI RCATGY 2 cut(s) 260, 407
XhoI CTCGAG 1 cut(s) 698
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.