FvH4_4g07340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015199
Physical Location & Seq
Forward (+)
6719145 .. 6722303
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07340.t1

Sequence Viewer

Length: 861 bp
ATGGCTACGGCGTCTTCCGTGTTGCCGTCCACCTCTTCTTCACCCCCTGAAGAAACTCTCCACAAACCTCAGGGTCCCGCAGTCTCCGGGCTTCCAAATTTGCCAAATGGTAATGGTGATCTTCAGTATTTACCAATCATGTATCCGGTGCTTGTTCCTGGGTTGCAAGATCAGGAACAGATGAACCGTGGATCGGGCCTTTATGCTGTTCCCGTTCACCCATTTACGGGGCCAGTTACTGGATTTTCATCTAATACTCTGATTCCGCTGACCTACAATGTCCCCACAACTAGAGCAACCCCAGATGTCGGCACTGGTGGGGAGCAGCATGGCCAAGAAGGACAGCAACAACCACAACAACAGCGTCAACAGCAACACCCTGGAGCTCAGAGACGAGTTATTGTAAGGAGATTTCAAATTCAGTTTCGGCTGGATCCGGTTCTGATTTTGAAGCTGATAGCTTTACTGCTTTTGTTCAATCAAGATGGATCTAGACAAAAGATGGTCATACTTGTGATTTGCGCCACAATTGTCTATTTATATAAAACTGGCTCGCTCACACCATTAATAGAATGGCTCTCTCGAGCCATGGATAGGGCAGCTGTGCCTCCCCAACCACCAAGACCTGCAGCAAGGGCTGAAAATGTTCCTCCTGCTGCAAGACAGGGGAATGATAATGCTGCTTTGCCAGATGGACAACCAGGAGTCGAGAATGAAAATCGGCCTGCAGATGCAAATGAGAATGCACCAGAACCGGGAGCCAATGGCGGTAACCGCTGGTGGGGAATTGTCAAGGAGATTCAGATGATTGTTTTTGGCTTCATCACTTCTCTCCTCCCAGGTTTTCATGATATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.03

Weight (kDa)

6.22

Isoelectric Point (pI)

58.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 634
AccB7I CCANNNNNTGG 1 cut(s) 239
AciI CCGC 4 cut(s) 78, 266, 768, 775
AclWI GGATC 4 cut(s) 199, 428, 441, 496
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 97, 417
AcuI CTGAAG 2 cut(s) 69, 107
AcyI GRCGYC 1 cut(s) 11
AfiI CCNNNNNNNGG 8 cut(s) 193, 226, 227, 239, 308, 594, 755, 781
AgsI TTSAA 3 cut(s) 416, 451, 478
AjnI CCWGG 4 cut(s) 157, 379, 700, 838
AluBI AGCT 4 cut(s) 386, 454, 461, 602
AluI AGCT 4 cut(s) 386, 454, 461, 602
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 2 cut(s) 88, 385
AlwI GGATC 4 cut(s) 199, 428, 441, 496
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 4 cut(s) 196, 230, 331, 722
ApeKI GCWGC 5 cut(s) 325, 599, 629, 656, 680
ApoI RAATTY 2 cut(s) 97, 417
AseI ATTAAT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 3 cut(s) 74, 196, 230
AsuC2I CCSGG 2 cut(s) 88, 756
AsuHPI GGTGA 3 cut(s) 33, 128, 209
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 69
BalI TGGCCA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 5 cut(s) 337, 611, 641, 643, 667
BccI CCATC 3 cut(s) 479, 496, 686
BceAI ACGGC 2 cut(s) 10, 24
BciT130I CCWGG 4 cut(s) 159, 381, 702, 840
BciVI GTATCC 1 cut(s) 153
BcnI CCSGG 2 cut(s) 88, 756
BcoDI GTCTC 2 cut(s) 88, 385
BfaI CTAG 2 cut(s) 291, 492
BfmI CTRYAG 2 cut(s) 627, 726
BfuAI ACCTGC 1 cut(s) 634
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 5 cut(s) 326, 600, 630, 657, 681
BlsI GCNGC 5 cut(s) 327, 601, 631, 658, 682
Bme1390I CCNGG 6 cut(s) 88, 159, 381, 702, 756, 840
Bme18I GGWCC 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 3 cut(s) 74, 196, 230
BmiI GGNNCC 5 cut(s) 75, 76, 231, 435, 760
BmrFI CCNGG 6 cut(s) 88, 159, 381, 702, 756, 840
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 88, 756
BsaBI GATNNNNATC 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 158, 187, 379, 588, 838
BsaWI WCCGGW 2 cut(s) 145, 436
Bsc4I CCNNNNNNNGG 8 cut(s) 193, 226, 227, 239, 308, 594, 755, 781
Bse1I ACTGG 4 cut(s) 233, 244, 319, 553
Bse21I CCTNAGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 247
BseBI CCWGG 4 cut(s) 159, 381, 702, 840
BseDI CCNNGG 5 cut(s) 158, 187, 379, 588, 838
BseJI GATNNNNATC 1 cut(s) 247
BseLI CCNNNNNNNGG 8 cut(s) 193, 226, 227, 239, 308, 594, 755, 781
BseMII CTCAG 2 cut(s) 83, 401
BseNI ACTGG 4 cut(s) 233, 244, 319, 553
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 5 cut(s) 337, 611, 641, 643, 667
BshFI GGCC 4 cut(s) 198, 232, 333, 724
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 87, 146, 437, 755
BslFI GGGAC 2 cut(s) 60, 266
BslI CCNNNNNNNGG 8 cut(s) 193, 226, 227, 239, 308, 594, 755, 781
BsmAI GTCTC 2 cut(s) 88, 385
BsmBI CGTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 60, 266
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 4 cut(s) 198, 232, 333, 724
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 5 cut(s) 118, 169, 191, 433, 488
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 4 cut(s) 78, 266, 768, 775
BspANI GGCC 4 cut(s) 198, 232, 333, 724
BspCNI CTCAG 2 cut(s) 82, 400
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 5 cut(s) 75, 76, 231, 435, 760
BspMAI CTGCAG 2 cut(s) 631, 730
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 4 cut(s) 199, 428, 441, 496
BsrI ACTGG 4 cut(s) 233, 244, 319, 553
BssECI CCNNGG 5 cut(s) 158, 187, 379, 588, 838
BssMI GATC 5 cut(s) 118, 169, 191, 433, 488
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 4 cut(s) 159, 381, 702, 840
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 554, 726
BstDEI CTNAG 2 cut(s) 69, 387
BstDSI CCRYGG 2 cut(s) 187, 588
BstEII GGTNACC 1 cut(s) 770
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 5 cut(s) 121, 172, 194, 436, 491
BstMAI GTCTC 2 cut(s) 88, 385
BstMBI GATC 5 cut(s) 118, 169, 191, 433, 488
BstMWI GCNNNNNNNGC 3 cut(s) 370, 635, 774
BstNI CCWGG 4 cut(s) 159, 381, 702, 840
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 6 cut(s) 86, 157, 379, 700, 754, 838
BstSFI CTRYAG 2 cut(s) 627, 726
BstV1I GCAGC 5 cut(s) 337, 611, 641, 643, 667
BstV2I GAAGAC 1 cut(s) 6
BstX2I RGATCY 2 cut(s) 433, 488
BstYI RGATCY 2 cut(s) 433, 488
Bsu36I CCTNAGG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 4 cut(s) 198, 232, 333, 724
BtgI CCRYGG 2 cut(s) 187, 588
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 2 cut(s) 554, 726
CaiI CAGNNNCTG 1 cut(s) 239
CciI TCATGA 1 cut(s) 847
CfoI GCGC 1 cut(s) 524
Cfr13I GGNCC 3 cut(s) 74, 196, 230
CseI GACGC 1 cut(s) 353
CviAII CATG 4 cut(s) 139, 329, 589, 848
DdeI CTNAG 2 cut(s) 69, 387
DpnI GATC 5 cut(s) 120, 171, 193, 435, 490
DpnII GATC 5 cut(s) 118, 169, 191, 433, 488
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 69, 107
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 582
Eco91I GGTNACC 1 cut(s) 770
EcoICRI GAGCTC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 770
EcoRII CCWGG 4 cut(s) 157, 379, 700, 838
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 588
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 4 cut(s) 142, 332, 592, 851
FaiI YATR 9 cut(s) 140, 204, 330, 509, 541, 543, 590, 849, 854
FaqI GGGAC 2 cut(s) 60, 266
FatI CATG 4 cut(s) 138, 328, 588, 847
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 5 cut(s) 326, 600, 630, 657, 681
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 5 cut(s) 326, 600, 630, 657, 681
FspBI CTAG 2 cut(s) 291, 492
GlaI GCGC 1 cut(s) 523
GluI GCNGC 5 cut(s) 326, 600, 630, 657, 681
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 4 cut(s) 198, 232, 333, 724
HapII CCGG 4 cut(s) 87, 146, 437, 755
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 524
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 4 cut(s) 142, 332, 592, 851
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 3 cut(s) 262, 705, 799
HpaII CCGG 4 cut(s) 87, 146, 437, 755
HphI GGTGA 3 cut(s) 33, 128, 209
Hpy166II GTNNAC 3 cut(s) 30, 217, 368
Hpy188I TCNGA 4 cut(s) 261, 390, 444, 804
Hpy188III TCNNGA 6 cut(s) 173, 482, 492, 582, 709, 848
Hpy8I GTNNAC 3 cut(s) 30, 217, 368
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 6 cut(s) 166, 629, 659, 728, 734, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 370, 635, 774
HpyF3I CTNAG 2 cut(s) 69, 387
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 4 cut(s) 142, 332, 592, 851
HspAI GCGC 1 cut(s) 522
KflI GGGWCCC 1 cut(s) 74
Kzo9I GATC 5 cut(s) 118, 169, 191, 433, 488
LmnI GCTCC 3 cut(s) 322, 383, 758
Lsp1109I GCAGC 5 cut(s) 337, 611, 641, 643, 667
LweI GCATC 1 cut(s) 721
MaeI CTAG 2 cut(s) 291, 492
MaeIII GTNAC 2 cut(s) 235, 770
MalI GATC 5 cut(s) 120, 171, 193, 435, 490
MboI GATC 5 cut(s) 118, 169, 191, 433, 488
MboII GAAGA 5 cut(s) 6, 27, 30, 62, 113
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 2 cut(s) 433, 488
MhlI GDGCHC 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 4 cut(s) 97, 417, 528, 786
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 1 cut(s) 714
MnlI CCTC 5 cut(s) 43, 78, 618, 660, 845
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 645
MscI TGGCCA 1 cut(s) 333
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 3 cut(s) 268, 602, 777
MspI CCGG 4 cut(s) 87, 146, 437, 755
MspR9I CCNGG 6 cut(s) 88, 159, 381, 702, 756, 840
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 4 cut(s) 159, 381, 702, 840
MwoI GCNNNNNNNGC 3 cut(s) 370, 635, 774
NciI CCSGG 2 cut(s) 88, 756
NcoI CCATGG 1 cut(s) 588
NdeII GATC 5 cut(s) 118, 169, 191, 433, 488
NlaIII CATG 4 cut(s) 142, 332, 592, 851
NlaIV GGNNCC 5 cut(s) 75, 76, 231, 435, 760
PaeR7I CTCGAG 1 cut(s) 582
PagI TCATGA 1 cut(s) 847
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 2 cut(s) 262, 799
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 5 cut(s) 327, 601, 631, 658, 682
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 4 cut(s) 157, 379, 700, 838
PspEI GGTNACC 1 cut(s) 770
PspGI CCWGG 4 cut(s) 157, 379, 700, 838
PspN4I GGNNCC 5 cut(s) 75, 76, 231, 435, 760
PspPI GGNCC 3 cut(s) 74, 196, 230
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 2 cut(s) 631, 730
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 2 cut(s) 433, 488
PvuII CAGCTG 1 cut(s) 602
RseI CAYNNNNRTG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 5 cut(s) 326, 600, 630, 657, 681
Sau3AI GATC 5 cut(s) 118, 169, 191, 433, 488
Sau96I GGNCC 3 cut(s) 74, 196, 230
SchI GAGTC 1 cut(s) 714
ScrFI CCNGG 6 cut(s) 88, 159, 381, 702, 756, 840
SduI GDGCHC 1 cut(s) 388
SetI ASST 9 cut(s) 35, 70, 275, 388, 456, 463, 604, 628, 844
SfaNI GCATC 1 cut(s) 721
SfcI CTRYAG 2 cut(s) 627, 726
Sfr274I CTCGAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 4 cut(s) 97, 417, 528, 786
SsiI CCGC 4 cut(s) 78, 266, 768, 775
SspMI CTAG 2 cut(s) 291, 492
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 6 cut(s) 86, 157, 379, 700, 754, 838
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 583, 708
TasI AATT 4 cut(s) 97, 417, 528, 786
TfiI GAWTC 2 cut(s) 262, 799
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 319
TseI GCWGC 5 cut(s) 325, 599, 629, 656, 680
TspDTI ATGAA 5 cut(s) 197, 237, 729, 811, 836
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 74
VspI ATTAAT 1 cut(s) 566
XapI RAATTY 2 cut(s) 97, 417
XbaI TCTAGA 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
XhoI CTCGAG 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 2 cut(s) 291, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.