Rh4BG093500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015199
Physical Location & Seq
Forward (+)
15989032 .. 15991922
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG093500.1

Sequence Viewer

Length: 876 bp
ATGGCCGAAGAGCCCGTACTAGTGTTGCCCTCCACCTCAAACCCTTCTTCATCCCCTAATTTGCCTTCAGAAACTCTCCCCAAATCACAGGTTCCGGCGGTCTCTGGGGGGCTTCCGTCTTTCCCAAATGGTGATCTTCAGATTTTACCAATCATGTATCCAATGCTTGTTCCTGGATTGCAAGATCAGGAACAGAGGAACCGTGGATCGGGCCTTTATGCTGTTCCCGTTCACCCATTTATGGGACCAGTTACTGGATTTTCGTCTAATACTCTGATTCCTCTTACCTACAATGTACCCACAAGTAGAGCAAGCCCAGATGTCGGCACTGGCGGAGAGCAGCATGGCCAAGAAGGACAGCAACAACCACAACAACAGCGTCAACAGCAACACCCTGGACCTCAGAGACGAGTTGTTGTAAGGAGATTTCAAATTCAGTTTCGGCTGGATCCGGTTCTTATTCTGAAGCTGATAGCTTTATTACTTTTGTTCAATCAAGATGGATCTAGACAAAAGATGGTCATCCTTGTGATTTGCGCTTCAATTGTCTATTTATATAAAACTGGCTCACTCACACCATTGATAGAATGGCTCTCTCGAGCCATGGATAGGGCAGCTGTGCCTCCCCAACCTCCAAGACCTGCAGCCAGGGCTGAAAATGTTCCTCCTGCTGCAAGGCAAGGGAATGATAATGCTGCTTTGCCAGATGGACAACCAGGAGTCGAGAATGAAAATCGACCTGCAGACGCGAATGAGAATGCACCGGAACCGGGAGCCAATGGTGGTAACCGCTGGTGGGGAATTGTCAAAGAGATTCAGATGATTGTTTTTGGCTTCATCACTTCTCTCCTCCCAGGTTTTCATGATATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.63

Weight (kDa)

6.11

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 649, 748
AccB7I CCANNNNNTGG 1 cut(s) 254
AccII CGCG 1 cut(s) 749
AciI CCGC 3 cut(s) 98, 333, 790
AclWI GGATC 4 cut(s) 214, 443, 456, 511
AcoI YGGCCR 2 cut(s) 3, 346
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 3 cut(s) 51, 122, 485
AfaI GTAC 2 cut(s) 18, 297
AfiI CCNNNNNNNGG 8 cut(s) 208, 241, 242, 254, 323, 609, 770, 796
AgsI TTSAA 3 cut(s) 431, 493, 543
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 5 cut(s) 172, 394, 647, 715, 853
AluBI AGCT 3 cut(s) 469, 476, 617
AluI AGCT 3 cut(s) 469, 476, 617
Alw26I GTCTC 2 cut(s) 106, 400
AlwI GGATC 4 cut(s) 214, 443, 456, 511
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 3 cut(s) 3, 211, 346
ApeKI GCWGC 5 cut(s) 340, 614, 644, 671, 695
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 660
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 3 cut(s) 211, 245, 398
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 2 cut(s) 143, 224
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 2 cut(s) 245, 398
BalI TGGCCA 1 cut(s) 348
BamHI GGATCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 15
BarI GAAGNNNNNNTAC 1 cut(s) 32
BbvI GCAGC 5 cut(s) 352, 626, 656, 658, 682
BccI CCATC 3 cut(s) 494, 511, 701
BciT130I CCWGG 5 cut(s) 174, 396, 649, 717, 855
BciVI GTATCC 1 cut(s) 168
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 106, 400
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 2 cut(s) 20, 507
BfmI CTRYAG 2 cut(s) 642, 741
BfuAI ACCTGC 2 cut(s) 649, 748
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 5 cut(s) 341, 615, 645, 672, 696
BlsI GCNGC 5 cut(s) 342, 616, 646, 673, 697
Bme1390I CCNGG 6 cut(s) 174, 396, 649, 717, 771, 855
Bme18I GGWCC 2 cut(s) 245, 398
BmeT110I CYCGRG 1 cut(s) 597
BmgT120I GGNCC 3 cut(s) 211, 245, 398
BmiI GGNNCC 6 cut(s) 93, 200, 246, 450, 768, 775
BmrFI CCNGG 6 cut(s) 174, 396, 649, 717, 771, 855
BpuMI CCSGG 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 5 cut(s) 202, 394, 603, 648, 853
BsaWI WCCGGW 2 cut(s) 451, 763
Bsc4I CCNNNNNNNGG 8 cut(s) 208, 241, 242, 254, 323, 609, 770, 796
Bse1I ACTGG 4 cut(s) 248, 259, 334, 568
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 5 cut(s) 174, 396, 649, 717, 855
BseDI CCNNGG 5 cut(s) 202, 394, 603, 648, 853
BseGI GGATG 2 cut(s) 50, 522
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 8 cut(s) 208, 241, 242, 254, 323, 609, 770, 796
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 4 cut(s) 248, 259, 334, 568
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 5 cut(s) 352, 626, 656, 658, 682
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 3 cut(s) 5, 213, 348
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 4 cut(s) 95, 452, 764, 770
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 8 cut(s) 208, 241, 242, 254, 323, 609, 770, 796
BsmAI GTCTC 2 cut(s) 106, 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 3 cut(s) 5, 213, 348
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 5 cut(s) 133, 184, 206, 448, 503
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 3 cut(s) 98, 333, 790
BspANI GGCC 3 cut(s) 5, 213, 348
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 1 cut(s) 749
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 6 cut(s) 93, 200, 246, 450, 768, 775
BspMAI CTGCAG 2 cut(s) 646, 745
BspMI ACCTGC 2 cut(s) 649, 748
BspPI GGATC 4 cut(s) 214, 443, 456, 511
BspQI GCTCTTC 1 cut(s) 3
BspTNI GGTCTC 1 cut(s) 106
BsrI ACTGG 4 cut(s) 248, 259, 334, 568
BssECI CCNNGG 5 cut(s) 202, 394, 603, 648, 853
BssMI GATC 5 cut(s) 133, 184, 206, 448, 503
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 5 cut(s) 174, 396, 649, 717, 855
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 402
BstDSI CCRYGG 2 cut(s) 202, 603
BstEII GGTNACC 1 cut(s) 785
BstF5I GGATG 2 cut(s) 50, 522
BstFNI CGCG 1 cut(s) 749
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 5 cut(s) 136, 187, 209, 451, 506
BstMAI GTCTC 2 cut(s) 106, 400
BstMBI GATC 5 cut(s) 133, 184, 206, 448, 503
BstMWI GCNNNNNNNGC 2 cut(s) 385, 650
BstNI CCWGG 5 cut(s) 174, 396, 649, 717, 855
BstPI GGTNACC 1 cut(s) 785
BstSCI CCNGG 6 cut(s) 172, 394, 647, 715, 769, 853
BstSFI CTRYAG 2 cut(s) 642, 741
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 5 cut(s) 352, 626, 656, 658, 682
BstX2I RGATCY 2 cut(s) 448, 503
BstYI RGATCY 2 cut(s) 448, 503
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 5, 213, 348
BtgI CCRYGG 2 cut(s) 202, 603
BtsCI GGATG 2 cut(s) 50, 522
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 2 cut(s) 649, 748
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 3 cut(s) 211, 245, 398
CseI GACGC 2 cut(s) 368, 755
Csp6I GTAC 2 cut(s) 17, 296
CviAII CATG 4 cut(s) 154, 344, 604, 863
CviQI GTAC 2 cut(s) 17, 296
DdeI CTNAG 1 cut(s) 402
DpnI GATC 5 cut(s) 135, 186, 208, 450, 505
DpnII GATC 5 cut(s) 133, 184, 206, 448, 503
EaeI YGGCCR 2 cut(s) 3, 346
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 245, 398
Eco57I CTGAAG 3 cut(s) 51, 122, 485
Eco88I CYCGRG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 785
EcoO65I GGTNACC 1 cut(s) 785
EcoRII CCWGG 5 cut(s) 172, 394, 647, 715, 853
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 4 cut(s) 157, 347, 607, 866
FaiI YATR 9 cut(s) 155, 219, 242, 345, 556, 558, 605, 864, 869
FaqI GGGAC 1 cut(s) 258
FatI CATG 4 cut(s) 153, 343, 603, 862
Fnu4HI GCNGC 5 cut(s) 341, 615, 645, 672, 696
FokI GGATG 2 cut(s) 37, 509
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 5 cut(s) 341, 615, 645, 672, 696
FspBI CTAG 2 cut(s) 20, 507
GlaI GCGC 1 cut(s) 538
GluI GCNGC 5 cut(s) 341, 615, 645, 672, 696
HaeIII GGCC 3 cut(s) 5, 213, 348
HapII CCGG 4 cut(s) 95, 452, 764, 770
HgaI GACGC 2 cut(s) 368, 755
HhaI GCGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 157, 347, 607, 866
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HinfI GANTC 3 cut(s) 277, 720, 814
HpaII CCGG 4 cut(s) 95, 452, 764, 770
HphI GGTGA 2 cut(s) 143, 224
Hpy166II GTNNAC 2 cut(s) 232, 383
Hpy188I TCNGA 6 cut(s) 70, 141, 276, 405, 465, 819
Hpy188III TCNNGA 6 cut(s) 188, 497, 507, 597, 724, 863
Hpy8I GTNNAC 2 cut(s) 232, 383
HpyAV CCTTC 3 cut(s) 54, 75, 347
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 5 cut(s) 181, 644, 674, 743, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 650
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 4 cut(s) 157, 347, 607, 866
HspAI GCGC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 133, 184, 206, 448, 503
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 5 cut(s) 352, 626, 656, 658, 682
MaeI CTAG 2 cut(s) 20, 507
MaeIII GTNAC 2 cut(s) 250, 785
MalI GATC 5 cut(s) 135, 186, 208, 450, 505
MboI GATC 5 cut(s) 133, 184, 206, 448, 503
MboII GAAGA 3 cut(s) 20, 39, 128
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 2 cut(s) 448, 503
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 4 cut(s) 58, 432, 543, 801
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 1 cut(s) 729
MnlI CCTC 9 cut(s) 40, 46, 189, 291, 411, 633, 642, 675, 860
Mox20I TGGCCA 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 660
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 2 cut(s) 617, 792
MspI CCGG 4 cut(s) 95, 452, 764, 770
MspR9I CCNGG 6 cut(s) 174, 396, 649, 717, 771, 855
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 5 cut(s) 174, 396, 649, 717, 855
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 2 cut(s) 385, 650
NciI CCSGG 1 cut(s) 771
NcoI CCATGG 1 cut(s) 603
NdeII GATC 5 cut(s) 133, 184, 206, 448, 503
NlaIII CATG 4 cut(s) 157, 347, 607, 866
NlaIV GGNNCC 6 cut(s) 93, 200, 246, 450, 768, 775
PaeR7I CTCGAG 1 cut(s) 597
PagI TCATGA 1 cut(s) 862
PciSI GCTCTTC 1 cut(s) 3
PctI GAATGC 1 cut(s) 763
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 2 cut(s) 277, 814
PflMI CCANNNNNTGG 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 5 cut(s) 342, 616, 646, 673, 697
PleI GAGTC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 728
Psp6I CCWGG 5 cut(s) 172, 394, 647, 715, 853
PspEI GGTNACC 1 cut(s) 785
PspGI CCWGG 5 cut(s) 172, 394, 647, 715, 853
PspN4I GGNNCC 6 cut(s) 93, 200, 246, 450, 768, 775
PspPI GGNCC 3 cut(s) 211, 245, 398
PstI CTGCAG 2 cut(s) 646, 745
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 448, 503
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 18, 297
RsaNI GTAC 2 cut(s) 17, 296
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 5 cut(s) 341, 615, 645, 672, 696
Sau3AI GATC 5 cut(s) 133, 184, 206, 448, 503
Sau96I GGNCC 3 cut(s) 211, 245, 398
SchI GAGTC 1 cut(s) 729
ScrFI CCNGG 6 cut(s) 174, 396, 649, 717, 771, 855
SduI GDGCHC 1 cut(s) 15
SfcI CTRYAG 2 cut(s) 642, 741
Sfr274I CTCGAG 1 cut(s) 597
SinI GGWCC 2 cut(s) 245, 398
SlaI CTCGAG 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 4 cut(s) 58, 432, 543, 801
SsiI CCGC 3 cut(s) 98, 333, 790
SspMI CTAG 2 cut(s) 20, 507
StyD4I CCNGG 6 cut(s) 172, 394, 647, 715, 769, 853
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 598, 723, 736
TasI AATT 4 cut(s) 58, 432, 543, 801
TfiI GAWTC 2 cut(s) 277, 814
TscAI CASTG 1 cut(s) 334
TseI GCWGC 5 cut(s) 340, 614, 644, 671, 695
TspDTI ATGAA 4 cut(s) 39, 744, 826, 851
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 245, 398
XapI RAATTY 1 cut(s) 432
XbaI TCTAGA 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 2 cut(s) 20, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.