Rh4DG088800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015199
Physical Location & Seq
Forward (+)
13502169 .. 13504714
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG088800.1

Sequence Viewer

Length: 816 bp
ATGGCCGAAGAGCCCGTAGTAGTGTTGCCCTCCACCTCAAACCCTTCTTCATCCCCTAATTTGCCTTCAGAAACTCTCCCCAAATCACAGGTTCCCGCAGTCTCTGGGGGGCTTCCGTCTTTCCCAAATGGTGATCTTCAGATTTTACCAATCATGTATCCAATGCTTGTTCCTGGATTGCAGGATCAGGAACAGAGGAACCGTGGATCGGGCCTTTATGCTGTTCCCGTTCACCCATTTACGGGGCCAGTTACTGGATTTTCGTCTAATACTCTGATTCCTCTTACCTACAATGTACCCACAAGTAGAGCAAGCCCAGATGTTGGCACTGGCGGAGAGCAGCATGGCCAAGAAGGACAGCAACAACCACAACAACAGCGTCAACAGCAACACCCTGGACCTCAGAGACGAGTTGTTGTAAGGAGATTTCAAATTCAGTTTCGGCTGGATCCGGTTCTTATTCTGAAGCTGATAGCTTTATTACTTTTGTTCAATCAAGATGGATCTAGACAAAAGATGGTCATCCTTGTGATTTGCGCTTCAATTGTCTATTTATATAAAACTGGCTCACTCACACCATTGATAGAATGGCTCTCTCGAGCCATGGATAGGGCAGCTGTGCCTCCCCAACCACCAAGACCTGCAGCCAGGGCTGAAAATGTTCCTCCTGCTGCAAGGCAAGGGAATGATAATGCTGCTTTGCCAGGTAATCTGTTGCTTGTATTTGCTAAATGTAACATAATTTTGGATTACATGCTTCACTATGAGCTACATAACATTGATGTTCAAAATCAAGGGATTGCTCCTTGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

29.67

Weight (kDa)

8.95

Isoelectric Point (pI)

70.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AccB7I CCANNNNNTGG 2 cut(s) 254, 323
AciI CCGC 2 cut(s) 96, 333
AclWI GGATC 5 cut(s) 192, 214, 443, 456, 511
AcoI YGGCCR 2 cut(s) 3, 346
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 3 cut(s) 51, 122, 485
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 6 cut(s) 208, 241, 242, 254, 323, 609
AgsI TTSAA 4 cut(s) 431, 493, 543, 788
AjnI CCWGG 4 cut(s) 172, 394, 647, 703
AluBI AGCT 4 cut(s) 469, 476, 617, 769
AluI AGCT 4 cut(s) 469, 476, 617, 769
Alw26I GTCTC 2 cut(s) 106, 400
AlwI GGATC 5 cut(s) 192, 214, 443, 456, 511
AlwNI CAGNNNCTG 2 cut(s) 104, 254
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 4 cut(s) 3, 211, 245, 346
ApeKI GCWGC 5 cut(s) 340, 614, 644, 671, 695
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 660
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 3 cut(s) 211, 245, 398
AsuHPI GGTGA 2 cut(s) 143, 224
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 348
BamHI GGATCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 352, 626, 656, 658, 682
BccI CCATC 2 cut(s) 494, 511
BciT130I CCWGG 4 cut(s) 174, 396, 649, 705
BciVI GTATCC 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 106, 400
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 649
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 5 cut(s) 341, 615, 645, 672, 696
BlsI GCNGC 5 cut(s) 342, 616, 646, 673, 697
Bme1390I CCNGG 4 cut(s) 174, 396, 649, 705
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 597
BmgT120I GGNCC 3 cut(s) 211, 245, 398
BmiI GGNNCC 4 cut(s) 93, 200, 246, 450
BmrFI CCNGG 4 cut(s) 174, 396, 649, 705
BsaBI GATNNNNATC 1 cut(s) 521
BsaJI CCNNGG 5 cut(s) 202, 394, 603, 648, 806
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 6 cut(s) 208, 241, 242, 254, 323, 609
Bse1I ACTGG 4 cut(s) 248, 259, 334, 568
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 4 cut(s) 174, 396, 649, 705
BseDI CCNNGG 5 cut(s) 202, 394, 603, 648, 806
BseGI GGATG 2 cut(s) 50, 522
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 6 cut(s) 208, 241, 242, 254, 323, 609
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 4 cut(s) 248, 259, 334, 568
BseXI GCAGC 5 cut(s) 352, 626, 656, 658, 682
BshFI GGCC 4 cut(s) 5, 213, 247, 348
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 6 cut(s) 208, 241, 242, 254, 323, 609
BsmAI GTCTC 2 cut(s) 106, 400
BsmBI CGTCTC 1 cut(s) 400
BsnI GGCC 4 cut(s) 5, 213, 247, 348
BsoBI CYCGRG 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 5 cut(s) 133, 184, 206, 448, 503
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 2 cut(s) 96, 333
BspANI GGCC 4 cut(s) 5, 213, 247, 348
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 4 cut(s) 93, 200, 246, 450
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 5 cut(s) 192, 214, 443, 456, 511
BspQI GCTCTTC 1 cut(s) 3
BsrI ACTGG 4 cut(s) 248, 259, 334, 568
BssECI CCNNGG 5 cut(s) 202, 394, 603, 648, 806
BssMI GATC 5 cut(s) 133, 184, 206, 448, 503
BssT1I CCWWGG 2 cut(s) 603, 806
Bst2UI CCWGG 4 cut(s) 174, 396, 649, 705
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 402
BstDSI CCRYGG 2 cut(s) 202, 603
BstF5I GGATG 2 cut(s) 50, 522
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 5 cut(s) 136, 187, 209, 451, 506
BstMAI GTCTC 2 cut(s) 106, 400
BstMBI GATC 5 cut(s) 133, 184, 206, 448, 503
BstMWI GCNNNNNNNGC 2 cut(s) 385, 650
BstNI CCWGG 4 cut(s) 174, 396, 649, 705
BstNSI RCATGY 1 cut(s) 757
BstSCI CCNGG 4 cut(s) 172, 394, 647, 703
BstSFI CTRYAG 1 cut(s) 642
BstV1I GCAGC 5 cut(s) 352, 626, 656, 658, 682
BstX2I RGATCY 2 cut(s) 448, 503
BstYI RGATCY 2 cut(s) 448, 503
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 4 cut(s) 5, 213, 247, 348
BtgI CCRYGG 2 cut(s) 202, 603
BtsCI GGATG 2 cut(s) 50, 522
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 2 cut(s) 104, 254
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 3 cut(s) 211, 245, 398
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 296
CviAII CATG 4 cut(s) 154, 344, 604, 754
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 402
DpnI GATC 5 cut(s) 135, 186, 208, 450, 505
DpnII GATC 5 cut(s) 133, 184, 206, 448, 503
EaeI YGGCCR 2 cut(s) 3, 346
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 603, 806
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 3 cut(s) 51, 122, 485
Eco88I CYCGRG 1 cut(s) 597
EcoRII CCWGG 4 cut(s) 172, 394, 647, 703
EcoT14I CCWWGG 2 cut(s) 603, 806
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 2 cut(s) 603, 806
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 4 cut(s) 157, 347, 607, 757
FatI CATG 4 cut(s) 153, 343, 603, 753
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 5 cut(s) 341, 615, 645, 672, 696
FokI GGATG 2 cut(s) 37, 509
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 5 cut(s) 341, 615, 645, 672, 696
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 538
GluI GCNGC 5 cut(s) 341, 615, 645, 672, 696
HaeIII GGCC 4 cut(s) 5, 213, 247, 348
HapII CCGG 1 cut(s) 452
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 157, 347, 607, 757
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 452
HphI GGTGA 2 cut(s) 143, 224
Hpy166II GTNNAC 2 cut(s) 232, 383
Hpy188I TCNGA 5 cut(s) 70, 141, 276, 405, 465
Hpy188III TCNNGA 4 cut(s) 188, 497, 507, 597
Hpy8I GTNNAC 2 cut(s) 232, 383
HpyAV CCTTC 3 cut(s) 54, 75, 347
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 181, 644, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 650
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 4 cut(s) 157, 347, 607, 757
HspAI GCGC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 133, 184, 206, 448, 503
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 5 cut(s) 352, 626, 656, 658, 682
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 250, 734
MalI GATC 5 cut(s) 135, 186, 208, 450, 505
MboI GATC 5 cut(s) 133, 184, 206, 448, 503
MboII GAAGA 3 cut(s) 20, 39, 128
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 2 cut(s) 448, 503
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 4 cut(s) 58, 432, 543, 741
MluNI TGGCCA 1 cut(s) 348
MnlI CCTC 7 cut(s) 40, 46, 189, 291, 411, 633, 675
Mox20I TGGCCA 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 660
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 4 cut(s) 174, 396, 649, 705
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 4 cut(s) 174, 396, 649, 705
MwoI GCNNNNNNNGC 2 cut(s) 385, 650
NcoI CCATGG 1 cut(s) 603
NdeII GATC 5 cut(s) 133, 184, 206, 448, 503
NlaIII CATG 4 cut(s) 157, 347, 607, 757
NlaIV GGNNCC 4 cut(s) 93, 200, 246, 450
NspI RCATGY 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 277
PflMI CCANNNNNTGG 2 cut(s) 254, 323
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 5 cut(s) 342, 616, 646, 673, 697
Psp6I CCWGG 4 cut(s) 172, 394, 647, 703
PspGI CCWGG 4 cut(s) 172, 394, 647, 703
PspN4I GGNNCC 4 cut(s) 93, 200, 246, 450
PspPI GGNCC 3 cut(s) 211, 245, 398
PstI CTGCAG 1 cut(s) 646
PstNI CAGNNNCTG 2 cut(s) 104, 254
PsuI RGATCY 2 cut(s) 448, 503
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 5 cut(s) 341, 615, 645, 672, 696
Sau3AI GATC 5 cut(s) 133, 184, 206, 448, 503
Sau96I GGNCC 3 cut(s) 211, 245, 398
ScrFI CCNGG 4 cut(s) 174, 396, 649, 705
SduI GDGCHC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 642
Sfr274I CTCGAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 4 cut(s) 58, 432, 543, 741
SsiI CCGC 2 cut(s) 96, 333
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 4 cut(s) 172, 394, 647, 703
StyI CCWWGG 2 cut(s) 603, 806
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 598
TasI AATT 4 cut(s) 58, 432, 543, 741
TfiI GAWTC 1 cut(s) 277
TscAI CASTG 1 cut(s) 334
TseI GCWGC 5 cut(s) 340, 614, 644, 671, 695
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 254, 323
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 432
XbaI TCTAGA 1 cut(s) 506
XceI RCATGY 1 cut(s) 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.