Rw4G007930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015199
Physical Location & Seq
Forward (+)
17008095 .. 17011642
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007930.1

Sequence Viewer

Length: 870 bp
ATGGCCGAAGAGCCCGTAGTAGTGTTGCCCTCCACCTCAAACCCTTCTTCATCCCCTAATTTGCCTTCAGAAACTCTCCCCAAATCACAGGTTCCGGCAGTCTCTGGGGGGCTTCCGTCTTTCCCAAATGGTGATCTTCAGATTTTACCAATCATGTATCCAATGCTTGTTCCTGGATTGCAAGATCAGGAACAGAGGAACCGTGGATCGGGCCTTTATGCTGTTCCTATTCACCCATTTACAGCTACTGGATTTTCGTCTAATACTCTGATTCCTCTTACCTACAATGTACCCACAAGTAGAGCAAGCCCGGATGTTGGCACTGGCGGAGAGCAGCATGGCCAAGAAGGACAGCAACAACCACAACAACAGCGTCAACAGCAACACCCTGGACCCCAGAGACGAGTTGTTGTAAGGAGATTTCAAATTCAGTTTCGGCTGGATCCGGTTCTTATTCTGAAGCTGATAGCTTTATTACTTTTGTTCAATCAAGATGGATCTAGACAAAAGATGGTCATCCTTGTGATTTGTGCTTCAATTGTCTATTTATATAAAACTGGCTCACTCACACCATTGATAGAATGGCTCTCTCGGGCCATGGATAGGGCAGCTGTGCCTCCCCAACCACCAAGACCTGCAGCCAGGGCTGAAAATGTTCCTCCTGCTGCAAGGCAAGGGAATGATGATGCTGCATTGCCAGATGGACAACCAGGAGTCGAGAATGAAAATCGACCTGCAGACGCGAATGAGAACGCACCGGAACCGGGAGCCAATGGTGGTAACCGCTGGTGGGGAATTGTCAAAGAGATTCAGATGATTGTTTTTGGCTTCATCACTTCTCTCCTCCCAGGTTTTCATGATATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.42

Weight (kDa)

5.85

Isoelectric Point (pI)

65.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 643, 742
AccII CGCG 1 cut(s) 743
AciI CCGC 2 cut(s) 327, 784
AclWI GGATC 4 cut(s) 214, 437, 450, 505
AcoI YGGCCR 2 cut(s) 3, 340
AcsI RAATTY 1 cut(s) 426
AcuI CTGAAG 3 cut(s) 51, 122, 479
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 5 cut(s) 208, 317, 603, 764, 790
AgsI TTSAA 3 cut(s) 425, 487, 537
AjnI CCWGG 5 cut(s) 172, 388, 641, 709, 847
AluBI AGCT 4 cut(s) 245, 463, 470, 611
AluI AGCT 4 cut(s) 245, 463, 470, 611
Alw26I GTCTC 2 cut(s) 106, 394
AlwI GGATC 4 cut(s) 214, 437, 450, 505
AlwNI CAGNNNCTG 2 cut(s) 104, 248
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 4 cut(s) 3, 211, 340, 594
ApeKI GCWGC 5 cut(s) 334, 608, 638, 665, 689
ApoI RAATTY 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 3 cut(s) 211, 392, 594
AsuC2I CCSGG 2 cut(s) 311, 765
AsuHPI GGTGA 2 cut(s) 143, 224
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 342
BamHI GGATCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 346, 620, 650, 652, 676
BccI CCATC 3 cut(s) 488, 505, 695
BciT130I CCWGG 5 cut(s) 174, 390, 643, 711, 849
BciVI GTATCC 1 cut(s) 168
BcnI CCSGG 2 cut(s) 311, 765
BcoDI GTCTC 2 cut(s) 106, 394
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 2 cut(s) 636, 735
BfuAI ACCTGC 2 cut(s) 643, 742
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 5 cut(s) 335, 609, 639, 666, 690
BlsI GCNGC 5 cut(s) 336, 610, 640, 667, 691
Bme1390I CCNGG 7 cut(s) 174, 311, 390, 643, 711, 765, 849
Bme18I GGWCC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 3 cut(s) 211, 392, 594
BmiI GGNNCC 6 cut(s) 93, 200, 394, 444, 762, 769
BmrFI CCNGG 7 cut(s) 174, 311, 390, 643, 711, 765, 849
BmsI GCATC 1 cut(s) 676
BpuMI CCSGG 2 cut(s) 311, 765
BsaBI GATNNNNATC 1 cut(s) 515
BsaJI CCNNGG 5 cut(s) 202, 388, 597, 642, 847
BsaWI WCCGGW 2 cut(s) 445, 757
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 317, 603, 764, 790
Bse1I ACTGG 3 cut(s) 253, 328, 562
Bse3DI GCAATG 1 cut(s) 692
Bse8I GATNNNNATC 1 cut(s) 515
BseBI CCWGG 5 cut(s) 174, 390, 643, 711, 849
BseDI CCNNGG 5 cut(s) 202, 388, 597, 642, 847
BseGI GGATG 3 cut(s) 50, 319, 516
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 5 cut(s) 208, 317, 603, 764, 790
BseMI GCAATG 1 cut(s) 692
BseNI ACTGG 3 cut(s) 253, 328, 562
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 5 cut(s) 346, 620, 650, 652, 676
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 4 cut(s) 5, 213, 342, 596
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 5 cut(s) 95, 311, 446, 758, 764
BslI CCNNNNNNNGG 5 cut(s) 208, 317, 603, 764, 790
BsmAI GTCTC 2 cut(s) 106, 394
BsmBI CGTCTC 1 cut(s) 394
BsnI GGCC 4 cut(s) 5, 213, 342, 596
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 5 cut(s) 133, 184, 206, 442, 497
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 2 cut(s) 327, 784
BspANI GGCC 4 cut(s) 5, 213, 342, 596
BspFNI CGCG 1 cut(s) 743
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 6 cut(s) 93, 200, 394, 444, 762, 769
BspMAI CTGCAG 2 cut(s) 640, 739
BspMI ACCTGC 2 cut(s) 643, 742
BspPI GGATC 4 cut(s) 214, 437, 450, 505
BspQI GCTCTTC 1 cut(s) 3
BsrDI GCAATG 1 cut(s) 692
BsrI ACTGG 3 cut(s) 253, 328, 562
BssECI CCNNGG 5 cut(s) 202, 388, 597, 642, 847
BssMI GATC 5 cut(s) 133, 184, 206, 442, 497
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 5 cut(s) 174, 390, 643, 711, 849
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 307
BstDSI CCRYGG 2 cut(s) 202, 597
BstEII GGTNACC 1 cut(s) 779
BstF5I GGATG 3 cut(s) 50, 319, 516
BstFNI CGCG 1 cut(s) 743
BstKTI GATC 5 cut(s) 136, 187, 209, 445, 500
BstMAI GTCTC 2 cut(s) 106, 394
BstMBI GATC 5 cut(s) 133, 184, 206, 442, 497
BstMWI GCNNNNNNNGC 2 cut(s) 379, 644
BstNI CCWGG 5 cut(s) 174, 390, 643, 711, 849
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 7 cut(s) 172, 309, 388, 641, 709, 763, 847
BstSFI CTRYAG 2 cut(s) 636, 735
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 5 cut(s) 346, 620, 650, 652, 676
BstX2I RGATCY 2 cut(s) 442, 497
BstYI RGATCY 2 cut(s) 442, 497
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 4 cut(s) 5, 213, 342, 596
BtgI CCRYGG 2 cut(s) 202, 597
BtsCI GGATG 3 cut(s) 50, 319, 516
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 2 cut(s) 643, 742
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 2 cut(s) 104, 248
CciI TCATGA 1 cut(s) 856
Cfr13I GGNCC 3 cut(s) 211, 392, 594
CseI GACGC 2 cut(s) 362, 749
Csp6I GTAC 1 cut(s) 290
CviAII CATG 4 cut(s) 154, 338, 598, 857
CviQI GTAC 1 cut(s) 290
DpnI GATC 5 cut(s) 135, 186, 208, 444, 499
DpnII GATC 5 cut(s) 133, 184, 206, 442, 497
EaeI YGGCCR 2 cut(s) 3, 340
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 3 cut(s) 51, 122, 479
Eco88I CYCGRG 1 cut(s) 591
Eco91I GGTNACC 1 cut(s) 779
EcoO65I GGTNACC 1 cut(s) 779
EcoRII CCWGG 5 cut(s) 172, 388, 641, 709, 847
EcoT14I CCWWGG 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 4 cut(s) 157, 341, 601, 860
FaiI YATR 8 cut(s) 155, 219, 339, 550, 552, 599, 858, 863
FatI CATG 4 cut(s) 153, 337, 597, 856
Fnu4HI GCNGC 5 cut(s) 335, 609, 639, 666, 690
FokI GGATG 3 cut(s) 37, 326, 503
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 5 cut(s) 335, 609, 639, 666, 690
FspBI CTAG 1 cut(s) 501
GluI GCNGC 5 cut(s) 335, 609, 639, 666, 690
HaeIII GGCC 4 cut(s) 5, 213, 342, 596
HapII CCGG 5 cut(s) 95, 311, 446, 758, 764
HgaI GACGC 2 cut(s) 362, 749
Hin1II CATG 4 cut(s) 157, 341, 601, 860
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 3 cut(s) 271, 714, 808
HpaII CCGG 5 cut(s) 95, 311, 446, 758, 764
HphI GGTGA 2 cut(s) 143, 224
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 5 cut(s) 70, 141, 270, 459, 813
Hpy188III TCNNGA 5 cut(s) 188, 491, 501, 718, 857
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 54, 75, 341
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 5 cut(s) 181, 638, 668, 692, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 644
Hsp92II CATG 4 cut(s) 157, 341, 601, 860
Kzo9I GATC 5 cut(s) 133, 184, 206, 442, 497
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 767
Lsp1109I GCAGC 5 cut(s) 346, 620, 650, 652, 676
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 779
MalI GATC 5 cut(s) 135, 186, 208, 444, 499
MboI GATC 5 cut(s) 133, 184, 206, 442, 497
MboII GAAGA 3 cut(s) 20, 39, 128
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 442, 497
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 4 cut(s) 58, 426, 537, 795
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 1 cut(s) 723
MnlI CCTC 7 cut(s) 40, 46, 189, 285, 627, 669, 854
Mox20I TGGCCA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 611, 786
MspI CCGG 5 cut(s) 95, 311, 446, 758, 764
MspR9I CCNGG 7 cut(s) 174, 311, 390, 643, 711, 765, 849
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 5 cut(s) 174, 390, 643, 711, 849
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 2 cut(s) 379, 644
NciI CCSGG 2 cut(s) 311, 765
NcoI CCATGG 1 cut(s) 597
NdeII GATC 5 cut(s) 133, 184, 206, 442, 497
NlaIII CATG 4 cut(s) 157, 341, 601, 860
NlaIV GGNNCC 6 cut(s) 93, 200, 394, 444, 762, 769
PagI TCATGA 1 cut(s) 856
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 2 cut(s) 271, 808
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 5 cut(s) 336, 610, 640, 667, 691
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
Psp6I CCWGG 5 cut(s) 172, 388, 641, 709, 847
PspEI GGTNACC 1 cut(s) 779
PspGI CCWGG 5 cut(s) 172, 388, 641, 709, 847
PspN4I GGNNCC 6 cut(s) 93, 200, 394, 444, 762, 769
PspPI GGNCC 3 cut(s) 211, 392, 594
PstI CTGCAG 2 cut(s) 640, 739
PstNI CAGNNNCTG 2 cut(s) 104, 248
PsuI RGATCY 2 cut(s) 442, 497
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 5 cut(s) 335, 609, 639, 666, 690
Sau3AI GATC 5 cut(s) 133, 184, 206, 442, 497
Sau96I GGNCC 3 cut(s) 211, 392, 594
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 7 cut(s) 174, 311, 390, 643, 711, 765, 849
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 1 cut(s) 676
SfcI CTRYAG 2 cut(s) 636, 735
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 521
Sse9I AATT 4 cut(s) 58, 426, 537, 795
SsiI CCGC 2 cut(s) 327, 784
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 7 cut(s) 172, 309, 388, 641, 709, 763, 847
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 717, 730
TasI AATT 4 cut(s) 58, 426, 537, 795
TfiI GAWTC 2 cut(s) 271, 808
TscAI CASTG 1 cut(s) 328
TseI GCWGC 5 cut(s) 334, 608, 638, 665, 689
TspDTI ATGAA 4 cut(s) 39, 738, 820, 845
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 1 cut(s) 426
XbaI TCTAGA 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.