Prupe.1G076300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015199
Physical Location & Seq
Forward (+)
5488230 .. 5492049
3820 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G076300.1

Sequence Viewer

Length: 903 bp
ATGGCCGAAGAACCCAAAACGTGGTCGTCCAGCTCGCAACCTTCTTCTACGTCTAAATCGGCCGAAGAAATTCTCCAGAAACCTCAGGTTCCACCACTTGCTGGGCTTCCATCTTTCCCAAATGGTGATTTTCAGATGTTACCAATCATGTACCCACTTCTTGTTCCTGGGTTAAATCCTTTACAAGATCAGGAGCAGATGAATCGTGGAGCAGGCATATATGCTGTTCCTGTTCACCCATTTATGGGGCCAGTTACAGGAGTTTCATCTAACACTCTGATTCCGCTTACCTACAACATACCCACAACTAGAGCAAGTCCAGAGGTTGGCACTGTAGGGGAGCAGCAAGGCCAAGAGGGAGAACAACAACAACAGCAGCAGCAACGTCAACAGCAACAGCCTGCACATCAGAGACAAGTGGTTGTGAGGAGATTTCAAATTGCATTTCAGCTTGATGTGTTGCTTATTGTGAAGCTTGCGGCTGTAATATTTCTATTCAATCAAGAAGGGTCTAGACAAAGGCTTGTTGTCCTTGTGATTGTCGCTTCAATTGTCTACTTATATCAAACTGGCTCACTCACACCATTAGTACGATGGCTCTCTCAAGGCATGCATAGGGCAGCTGTGCCTCCTCATCCCCCAAGGCCTGTAGCCAGGGCCGGAAATGTTCCTCCTGCTGCAAGGCAGGGTGTTGACAATGCTGCTTTGGCAGACGGACAGCCGGGAGCCGAGAATGAGAATCAGCCTGCAGATGATGGAAATCAGGCGGTTGAAAATGAGAATGTGCCAGCAGCTGATGGAGCCAATGGTGGTAACCGCTGGTGGGGAATTGTTAAAGAGATTCAGATGATTGTTTTCGGCTTCATCACTTCACTTCTCCCAGGTTTTCATAATATAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.62

Weight (kDa)

5.58

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 21, 101, 326
AccI GTMKAC 1 cut(s) 555
AciI CCGC 4 cut(s) 284, 479, 767, 817
AcoI YGGCCR 2 cut(s) 3, 60
AcsI RAATTY 1 cut(s) 69
AfaI GTAC 2 cut(s) 152, 591
AfiI CCNNNNNNNGG 7 cut(s) 21, 101, 244, 245, 257, 326, 823
AgsI TTSAA 4 cut(s) 437, 499, 549, 773
AjnI CCWGG 3 cut(s) 166, 653, 880
AluBI AGCT 5 cut(s) 33, 451, 475, 623, 794
AluI AGCT 5 cut(s) 33, 451, 475, 623, 794
Alw26I GTCTC 1 cut(s) 406
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 6 cut(s) 3, 60, 248, 349, 644, 657
ApeKI GCWGC 7 cut(s) 343, 376, 379, 620, 677, 701, 791
ApoI RAATTY 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 248, 657
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 2 cut(s) 137, 227
AxyI CCTNAGG 1 cut(s) 84
BbvI GCAGC 7 cut(s) 355, 388, 391, 632, 664, 688, 803
BccI CCATC 4 cut(s) 118, 588, 749, 791
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 3 cut(s) 168, 655, 882
BcnI CCSGG 1 cut(s) 723
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 2 cut(s) 309, 513
BfmI CTRYAG 3 cut(s) 333, 648, 747
BisI GCNGC 8 cut(s) 344, 377, 380, 480, 621, 678, 702, 792
BlsI GCNGC 8 cut(s) 345, 378, 381, 481, 622, 679, 703, 793
Bme1390I CCNGG 4 cut(s) 168, 655, 723, 882
BmgT120I GGNCC 2 cut(s) 248, 657
BmiI GGNNCC 4 cut(s) 90, 249, 727, 802
BmrFI CCNGG 4 cut(s) 168, 655, 723, 882
BpmI CTGGAG 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 4 cut(s) 167, 641, 654, 880
Bsc4I CCNNNNNNNGG 7 cut(s) 21, 101, 244, 245, 257, 326, 823
Bse1I ACTGG 2 cut(s) 251, 574
Bse21I CCTNAGG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 3 cut(s) 168, 655, 882
BseDI CCNNGG 4 cut(s) 167, 641, 654, 880
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 7 cut(s) 21, 101, 244, 245, 257, 326, 823
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 251, 574
BseRI GAGGAG 2 cut(s) 442, 621
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 7 cut(s) 355, 388, 391, 632, 664, 688, 803
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 6 cut(s) 5, 62, 250, 351, 646, 659
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 660, 722
BslI CCNNNNNNNGG 7 cut(s) 21, 101, 244, 245, 257, 326, 823
BsmAI GTCTC 1 cut(s) 406
BsnI GGCC 6 cut(s) 5, 62, 250, 351, 646, 659
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 4 cut(s) 284, 479, 767, 817
BspANI GGCC 6 cut(s) 5, 62, 250, 351, 646, 659
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 4 cut(s) 90, 249, 727, 802
BspMAI CTGCAG 1 cut(s) 751
BsrI ACTGG 2 cut(s) 251, 574
BssECI CCNNGG 4 cut(s) 167, 641, 654, 880
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 641
Bst2UI CCWGG 3 cut(s) 168, 655, 882
Bst4CI ACNGT 1 cut(s) 334
BstC8I GCNNGC 7 cut(s) 35, 214, 402, 477, 611, 747, 789
BstDEI CTNAG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 812
BstF5I GGATG 1 cut(s) 634
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 707, 800
BstNI CCWGG 3 cut(s) 168, 655, 882
BstNSI RCATGY 1 cut(s) 613
BstPI GGTNACC 1 cut(s) 812
BstSCI CCNGG 4 cut(s) 166, 653, 721, 880
BstSFI CTRYAG 3 cut(s) 333, 648, 747
BstV1I GCAGC 7 cut(s) 355, 388, 391, 632, 664, 688, 803
BstZI CGGCCG 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 6 cut(s) 5, 62, 250, 351, 646, 659
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 7 cut(s) 35, 214, 402, 477, 611, 747, 789
CaiI CAGNNNCTG 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 248, 657
Csp6I GTAC 2 cut(s) 151, 590
CviAII CATG 2 cut(s) 148, 610
CviQI GTAC 2 cut(s) 151, 590
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 2 cut(s) 3, 60
EagI CGGCCG 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 641
Eco147I AGGCCT 1 cut(s) 646
Eco52I CGGCCG 1 cut(s) 60
Eco81I CCTNAGG 1 cut(s) 84
Eco91I GGTNACC 1 cut(s) 812
EcoO65I GGTNACC 1 cut(s) 812
EcoRII CCWGG 3 cut(s) 166, 653, 880
EcoT14I CCWWGG 1 cut(s) 641
EcoT22I ATGCAT 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 641
FaeI CATG 2 cut(s) 151, 613
FatI CATG 2 cut(s) 147, 609
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 8 cut(s) 344, 377, 380, 480, 621, 678, 702, 792
FokI GGATG 1 cut(s) 621
Fsp4HI GCNGC 8 cut(s) 344, 377, 380, 480, 621, 678, 702, 792
FspBI CTAG 2 cut(s) 309, 513
GluI GCNGC 8 cut(s) 344, 377, 380, 480, 621, 678, 702, 792
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 6 cut(s) 5, 62, 250, 351, 646, 659
HapII CCGG 2 cut(s) 660, 722
Hin1II CATG 2 cut(s) 151, 613
HincII GTYRAC 2 cut(s) 389, 694
HindII GTYRAC 2 cut(s) 389, 694
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 4 cut(s) 202, 280, 739, 841
HpaII CCGG 2 cut(s) 660, 722
HphI GGTGA 2 cut(s) 137, 227
Hpy166II GTNNAC 4 cut(s) 235, 389, 556, 694
Hpy188I TCNGA 4 cut(s) 135, 279, 411, 846
Hpy188III TCNNGA 5 cut(s) 76, 191, 320, 503, 513
Hpy8I GTNNAC 4 cut(s) 235, 389, 556, 694
HpyAV CCTTC 2 cut(s) 51, 500
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 3 cut(s) 20, 50, 385
HpyCH4V TGCA 5 cut(s) 404, 443, 613, 680, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 800
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 3 cut(s) 20, 50, 385
Hsp92II CATG 2 cut(s) 151, 613
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 5 cut(s) 193, 209, 340, 725, 800
Lsp1109I GCAGC 7 cut(s) 355, 388, 391, 632, 664, 688, 803
MaeI CTAG 2 cut(s) 309, 513
MaeII ACGT 3 cut(s) 20, 50, 385
MaeIII GTNAC 3 cut(s) 138, 253, 812
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 20, 36, 77
MfeI CAATTG 1 cut(s) 549
MluCI AATT 4 cut(s) 69, 438, 549, 828
MnlI CCTC 7 cut(s) 93, 316, 349, 420, 639, 642, 681
Mph1103I ATGCAT 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 173, 834
MspA1I CMGCKG 3 cut(s) 623, 794, 819
MspI CCGG 2 cut(s) 660, 722
MspR9I CCNGG 4 cut(s) 168, 655, 723, 882
MunI CAATTG 1 cut(s) 549
MvaI CCWGG 3 cut(s) 168, 655, 882
MwoI GCNNNNNNNGC 2 cut(s) 707, 800
NciI CCSGG 1 cut(s) 723
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 151, 613
NlaIV GGNNCC 4 cut(s) 90, 249, 727, 802
NmeAIII GCCGAG 1 cut(s) 754
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 1 cut(s) 613
PaeI GCATGC 1 cut(s) 613
PceI AGGCCT 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 4 cut(s) 202, 280, 739, 841
PflMI CCANNNNNTGG 3 cut(s) 21, 101, 326
PkrI GCNGC 8 cut(s) 345, 378, 381, 481, 622, 679, 703, 793
Psp6I CCWGG 3 cut(s) 166, 653, 880
PspEI GGTNACC 1 cut(s) 812
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 3 cut(s) 166, 653, 880
PspN4I GGNNCC 4 cut(s) 90, 249, 727, 802
PspPI GGNCC 2 cut(s) 248, 657
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 794
PvuII CAGCTG 2 cut(s) 623, 794
RsaI GTAC 2 cut(s) 152, 591
RsaNI GTAC 2 cut(s) 151, 590
SaqAI TTAA 2 cut(s) 173, 834
SatI GCNGC 8 cut(s) 344, 377, 380, 480, 621, 678, 702, 792
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 2 cut(s) 248, 657
ScrFI CCNGG 4 cut(s) 168, 655, 723, 882
SfcI CTRYAG 3 cut(s) 333, 648, 747
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SphI GCATGC 1 cut(s) 613
Sse9I AATT 4 cut(s) 69, 438, 549, 828
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 4 cut(s) 284, 479, 767, 817
SspI AATATT 1 cut(s) 489
SspMI CTAG 2 cut(s) 309, 513
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 4 cut(s) 166, 653, 721, 880
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 3 cut(s) 23, 53, 388
TasI AATT 4 cut(s) 69, 438, 549, 828
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 4 cut(s) 202, 280, 739, 841
Tru1I TTAA 2 cut(s) 173, 834
Tru9I TTAA 2 cut(s) 173, 834
TscAI CASTG 1 cut(s) 337
TseI GCWGC 7 cut(s) 343, 376, 379, 620, 677, 701, 791
TspDTI ATGAA 4 cut(s) 215, 255, 853, 878
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 1 cut(s) 337
Van91I CCANNNNNTGG 3 cut(s) 21, 101, 326
XapI RAATTY 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 309, 513
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.