Rh4AG096000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0015199
Physical Location & Seq
Forward (+)
20413142 .. 20416508
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG096000.1

Sequence Viewer

Length: 840 bp
ATGCTGAAAAGACAACTTACAAAATATTGGGTTTTAATGCTTGATTCCAGAGAGGTTCCGGCTGTCTCTGGGGGGCTTCCGTCTTTCCCAAATGGTGATCTTCAGATTTTACCAATCATGTATCCAATGCTTGTTCCTGGATTGCAAGATCAGGAACAGAGGAACCGTGGATCGGGCCTTTATGTTGTCCCCGTTCACCCATTTACGGGGCCAGCTACAGGATTTTCGTCTAATACTCTGATTCCTCTTACCTACAATGTACCCACAAGTAGAGCAAGCCCGGATGTTGGCACTGGCGGAGAGCAGCATGGCCAAGAAGGACAGCAACAACCACAACAACAGCGTCAACAGCAACACCCTGGACCTCAGAGACGAGTTGTTGTAAGGAGATTTCAAATTCAGTTTCGGCTGGATCCGGTTCTTATTCTGAAGCTGATAGCTTTATTACTTTTGTTCAATCAAGATGGATCTAGACAAAAGATGGTCATCCTTGTGATTTGCGCTTCAATTGTCTATTTATATAAAACTGGCTCACTCACACCATTGATAGAATGGCTCTCTCGGGCCATGGATAGGGCAGCTGTGCCTCCCCAACCACCAAGACCTGCAGCCAGGGCTGAAAATGTTCCTCCTGCTGCAAGGCAAGGGAATGATGATGCTGCATTGCCAGATGGACAACCAGGAGTCGAGAATGAAAATCGACCTGCAGACGCGAATGAGAACGCACCGGAACCGGGAGCCAATGGTGGTAACCGCTGGTGGGGAATTGTCAAAGAGATTCAGATGATTGTTTTTGGCTTCATCACTTCTCTCCTCCCAGGTTTTCATGATATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

30.77

Weight (kDa)

7.89

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29960
fragaria_vesca FvH4_4g07340
malus_domestica MD16G1249500.v1.1
prunus_persica Prupe.1G076300_v2.0.a1 Prupe.1G076300_v2.0.a1
pyrus_communis pycom16g20890
rosa_chinensis RchiOBHm_Chr4g0399711
rosa_laevigata RLG00000009245
rosa_multiflora Rmu_ssc0000118.1_g000010
rosa_roxburghii Rroxscaffold_5G00344650
rosa_rugosa Rorug04G0018500
rosa_samantha Rh4AG096000 Rh4BG093500 Rh4CG104800 Rh4DG088800
rosa_wichuraiana Rw4G007930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 613, 712
AccII CGCG 1 cut(s) 713
AciI CCGC 2 cut(s) 297, 754
AclWI GGATC 4 cut(s) 178, 407, 420, 475
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 2 cut(s) 86, 449
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 8 cut(s) 172, 205, 206, 218, 287, 573, 734, 760
AgsI TTSAA 3 cut(s) 395, 457, 507
AjnI CCWGG 5 cut(s) 136, 358, 611, 679, 817
AluBI AGCT 4 cut(s) 215, 433, 440, 581
AluI AGCT 4 cut(s) 215, 433, 440, 581
Alw26I GTCTC 2 cut(s) 70, 364
AlwI GGATC 4 cut(s) 178, 407, 420, 475
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 4 cut(s) 175, 209, 310, 564
ApeKI GCWGC 5 cut(s) 304, 578, 608, 635, 659
ApoI RAATTY 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 4 cut(s) 175, 209, 362, 564
AsuC2I CCSGG 2 cut(s) 281, 735
AsuHPI GGTGA 2 cut(s) 107, 188
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 312
BamHI GGATCC 1 cut(s) 412
BbvI GCAGC 5 cut(s) 316, 590, 620, 622, 646
BccI CCATC 3 cut(s) 458, 475, 665
BciT130I CCWGG 5 cut(s) 138, 360, 613, 681, 819
BciVI GTATCC 1 cut(s) 132
BcnI CCSGG 2 cut(s) 281, 735
BcoDI GTCTC 2 cut(s) 70, 364
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 3 cut(s) 216, 606, 705
BfuAI ACCTGC 2 cut(s) 613, 712
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 5 cut(s) 305, 579, 609, 636, 660
BlsI GCNGC 5 cut(s) 306, 580, 610, 637, 661
Bme1390I CCNGG 7 cut(s) 138, 281, 360, 613, 681, 735, 819
Bme18I GGWCC 1 cut(s) 362
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 4 cut(s) 175, 209, 362, 564
BmiI GGNNCC 6 cut(s) 57, 164, 210, 414, 732, 739
BmrFI CCNGG 7 cut(s) 138, 281, 360, 613, 681, 735, 819
BmsI GCATC 1 cut(s) 646
BpuMI CCSGG 2 cut(s) 281, 735
BsaBI GATNNNNATC 1 cut(s) 485
BsaJI CCNNGG 5 cut(s) 166, 358, 567, 612, 817
BsaWI WCCGGW 2 cut(s) 415, 727
Bsc4I CCNNNNNNNGG 8 cut(s) 172, 205, 206, 218, 287, 573, 734, 760
Bse1I ACTGG 2 cut(s) 298, 532
Bse3DI GCAATG 1 cut(s) 662
Bse8I GATNNNNATC 1 cut(s) 485
BseBI CCWGG 5 cut(s) 138, 360, 613, 681, 819
BseDI CCNNGG 5 cut(s) 166, 358, 567, 612, 817
BseGI GGATG 2 cut(s) 289, 486
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 8 cut(s) 172, 205, 206, 218, 287, 573, 734, 760
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 298, 532
BseRI GAGGAG 1 cut(s) 803
BseXI GCAGC 5 cut(s) 316, 590, 620, 622, 646
Bsh1236I CGCG 1 cut(s) 713
BshFI GGCC 4 cut(s) 177, 211, 312, 566
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 5 cut(s) 59, 281, 416, 728, 734
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 8 cut(s) 172, 205, 206, 218, 287, 573, 734, 760
BsmAI GTCTC 2 cut(s) 70, 364
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 4 cut(s) 177, 211, 312, 566
BsoBI CYCGRG 1 cut(s) 561
Bsp143I GATC 5 cut(s) 97, 148, 170, 412, 467
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 2 cut(s) 297, 754
BspANI GGCC 4 cut(s) 177, 211, 312, 566
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 713
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 6 cut(s) 57, 164, 210, 414, 732, 739
BspMAI CTGCAG 2 cut(s) 610, 709
BspMI ACCTGC 2 cut(s) 613, 712
BspPI GGATC 4 cut(s) 178, 407, 420, 475
BsrDI GCAATG 1 cut(s) 662
BsrI ACTGG 2 cut(s) 298, 532
BssECI CCNNGG 5 cut(s) 166, 358, 567, 612, 817
BssMI GATC 5 cut(s) 97, 148, 170, 412, 467
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 5 cut(s) 138, 360, 613, 681, 819
Bst4CI ACNGT 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 213, 277
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 2 cut(s) 166, 567
BstEII GGTNACC 1 cut(s) 749
BstF5I GGATG 2 cut(s) 289, 486
BstFNI CGCG 1 cut(s) 713
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 5 cut(s) 100, 151, 173, 415, 470
BstMAI GTCTC 2 cut(s) 70, 364
BstMBI GATC 5 cut(s) 97, 148, 170, 412, 467
BstMWI GCNNNNNNNGC 2 cut(s) 349, 614
BstNI CCWGG 5 cut(s) 138, 360, 613, 681, 819
BstPI GGTNACC 1 cut(s) 749
BstSCI CCNGG 7 cut(s) 136, 279, 358, 611, 679, 733, 817
BstSFI CTRYAG 3 cut(s) 216, 606, 705
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 5 cut(s) 316, 590, 620, 622, 646
BstX2I RGATCY 2 cut(s) 412, 467
BstYI RGATCY 2 cut(s) 412, 467
BsuI GTATCC 1 cut(s) 132
BsuRI GGCC 4 cut(s) 177, 211, 312, 566
BtgI CCRYGG 2 cut(s) 166, 567
BtsCI GGATG 2 cut(s) 289, 486
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 2 cut(s) 613, 712
Cac8I GCNNGC 2 cut(s) 213, 277
CciI TCATGA 1 cut(s) 826
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 4 cut(s) 175, 209, 362, 564
CseI GACGC 2 cut(s) 332, 719
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 118, 308, 568, 827
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 366
DpnI GATC 5 cut(s) 99, 150, 172, 414, 469
DpnII GATC 5 cut(s) 97, 148, 170, 412, 467
EaeI YGGCCR 1 cut(s) 310
EciI GGCGGA 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 2 cut(s) 86, 449
Eco88I CYCGRG 1 cut(s) 561
Eco91I GGTNACC 1 cut(s) 749
EcoO65I GGTNACC 1 cut(s) 749
EcoRII CCWGG 5 cut(s) 136, 358, 611, 679, 817
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 4 cut(s) 121, 311, 571, 830
FaiI YATR 8 cut(s) 119, 183, 309, 520, 522, 569, 828, 833
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 117, 307, 567, 826
Fnu4HI GCNGC 5 cut(s) 305, 579, 609, 636, 660
FokI GGATG 2 cut(s) 296, 473
Fsp4HI GCNGC 5 cut(s) 305, 579, 609, 636, 660
FspBI CTAG 1 cut(s) 471
GlaI GCGC 1 cut(s) 502
GluI GCNGC 5 cut(s) 305, 579, 609, 636, 660
HaeIII GGCC 4 cut(s) 177, 211, 312, 566
HapII CCGG 5 cut(s) 59, 281, 416, 728, 734
HgaI GACGC 2 cut(s) 332, 719
HhaI GCGC 1 cut(s) 503
Hin1II CATG 4 cut(s) 121, 311, 571, 830
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HinfI GANTC 4 cut(s) 44, 241, 684, 778
HpaII CCGG 5 cut(s) 59, 281, 416, 728, 734
HphI GGTGA 2 cut(s) 107, 188
Hpy166II GTNNAC 2 cut(s) 196, 347
Hpy188I TCNGA 5 cut(s) 105, 240, 369, 429, 783
Hpy188III TCNNGA 6 cut(s) 48, 152, 461, 471, 688, 827
Hpy8I GTNNAC 2 cut(s) 196, 347
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 5 cut(s) 145, 608, 638, 662, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 614
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 4 cut(s) 121, 311, 571, 830
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 5 cut(s) 97, 148, 170, 412, 467
LmnI GCTCC 1 cut(s) 737
Lsp1109I GCAGC 5 cut(s) 316, 590, 620, 622, 646
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 749
MalI GATC 5 cut(s) 99, 150, 172, 414, 469
MboI GATC 5 cut(s) 97, 148, 170, 412, 467
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 2 cut(s) 412, 467
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 396, 507, 765
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 693
MnlI CCTC 7 cut(s) 46, 153, 255, 375, 597, 639, 824
Mox20I TGGCCA 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 624
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 581, 756
MspI CCGG 5 cut(s) 59, 281, 416, 728, 734
MspR9I CCNGG 7 cut(s) 138, 281, 360, 613, 681, 735, 819
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 5 cut(s) 138, 360, 613, 681, 819
MvnI CGCG 1 cut(s) 713
MwoI GCNNNNNNNGC 2 cut(s) 349, 614
NciI CCSGG 2 cut(s) 281, 735
NcoI CCATGG 1 cut(s) 567
NdeII GATC 5 cut(s) 97, 148, 170, 412, 467
NlaIII CATG 4 cut(s) 121, 311, 571, 830
NlaIV GGNNCC 6 cut(s) 57, 164, 210, 414, 732, 739
PagI TCATGA 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 44, 241, 778
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 5 cut(s) 306, 580, 610, 637, 661
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp6I CCWGG 5 cut(s) 136, 358, 611, 679, 817
PspEI GGTNACC 1 cut(s) 749
PspGI CCWGG 5 cut(s) 136, 358, 611, 679, 817
PspN4I GGNNCC 6 cut(s) 57, 164, 210, 414, 732, 739
PspPI GGNCC 4 cut(s) 175, 209, 362, 564
PstI CTGCAG 2 cut(s) 610, 709
PsuI RGATCY 2 cut(s) 412, 467
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 5 cut(s) 305, 579, 609, 636, 660
Sau3AI GATC 5 cut(s) 97, 148, 170, 412, 467
Sau96I GGNCC 4 cut(s) 175, 209, 362, 564
SchI GAGTC 1 cut(s) 693
ScrFI CCNGG 7 cut(s) 138, 281, 360, 613, 681, 735, 819
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 3 cut(s) 216, 606, 705
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 3 cut(s) 396, 507, 765
SsiI CCGC 2 cut(s) 297, 754
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 7 cut(s) 136, 279, 358, 611, 679, 733, 817
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 687, 700
TasI AATT 3 cut(s) 396, 507, 765
TfiI GAWTC 3 cut(s) 44, 241, 778
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 298
TseI GCWGC 5 cut(s) 304, 578, 608, 635, 659
TspDTI ATGAA 3 cut(s) 708, 790, 815
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 1 cut(s) 396
XbaI TCTAGA 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.