AT4G30996

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015455
Physical Location & Seq
Forward (+)
15101065 .. 15102788
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30996.1

Sequence Viewer

Length: 519 bp
ATGCCTCGTCGATCCGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTGTGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACACGTGCCAACTCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCTCCTGGGCTCGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTTAAACAAGAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTTGCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCTCAGTATCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGAGAGAGAGCTGAAGCTTTGTTGATCAAGGAGAGGAAGATTACTTCTTTGTGGGAGAAGAGAGCTCGGCAATCAGGTTGGGAAGGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

172

Amino Acids

19.11

Weight (kDa)

5.57

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 11 - 170 3.5e-72 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30996
fragaria_vesca FvH4_1g01280
malus_domestica MD02G1010700.v1.1 MD15G1155600.v1.1
prunus_persica Prupe.7G259500_v2.0.a1
pyrus_communis pycom02g00960 pycom15g13960
rosa_chinensis RchiOBHm_Chr2g0086111
rosa_laevigata RLG00000015744
rosa_multiflora Rmu_sc0004510.1_g000001
rosa_roxburghii Rroxscaffold_2G00154800
rosa_rugosa Rorug01G0465800
rosa_samantha Rh2BG015500 Rh2CG016400 Rh2DG017500
rosa_wichuraiana Rw2G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 85
AccII CGCG 1 cut(s) 47
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 2 cut(s) 47, 402
AclWI GGATC 4 cut(s) 6, 108, 121, 227
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 311, 459
AcvI CACGTG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 9 cut(s) 59, 241, 289, 295, 353, 425, 437, 443, 491
AluI AGCT 9 cut(s) 59, 241, 289, 295, 353, 425, 437, 443, 491
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 4 cut(s) 6, 108, 121, 227
Aor13HI TCCGGA 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 74, 271
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 74, 271
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 2 cut(s) 198, 493
BbrPI CACGTG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 2 cut(s) 296, 402
BlsI GCNGC 2 cut(s) 297, 403
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 2 cut(s) 74, 271
BmgT120I GGNCC 2 cut(s) 74, 271
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 403
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 4 cut(s) 273, 378, 383, 399
BseRI GAGGAG 2 cut(s) 153, 299
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 198, 493
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 4 cut(s) 11, 113, 232, 450
BspACI CCGC 2 cut(s) 47, 402
BspCNI CTCAG 4 cut(s) 274, 379, 382, 400
BspEI TCCGGA 1 cut(s) 14
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 4 cut(s) 6, 108, 121, 227
BsrDI GCAATG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 4 cut(s) 11, 113, 232, 450
Bst2UI CCWGG 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 180, 479
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 282, 369, 387, 408
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 4 cut(s) 14, 116, 235, 453
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 4 cut(s) 11, 113, 232, 450
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 74, 271
CviAII CATG 1 cut(s) 25
DdeI CTNAG 4 cut(s) 282, 369, 387, 408
DpnI GATC 4 cut(s) 13, 115, 234, 452
DpnII GATC 4 cut(s) 11, 113, 232, 450
Eam1104I CTCTTC 2 cut(s) 180, 479
EarI CTCTTC 2 cut(s) 180, 479
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 2 cut(s) 198, 493
Eco47I GGWCC 2 cut(s) 74, 271
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 311, 459
Eco72I CACGTG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 190
EcoT38I GRGCYC 2 cut(s) 198, 493
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 26, 321, 330, 332
FatI CATG 1 cut(s) 24
FauNDI CATATG 1 cut(s) 330
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 296, 402
FriOI GRGCYC 2 cut(s) 198, 493
Fsp4HI GCNGC 2 cut(s) 296, 402
FspBI CTAG 1 cut(s) 426
GluI GCNGC 2 cut(s) 296, 402
GsuI CTGGAG 1 cut(s) 164
HapII CCGG 1 cut(s) 15
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 1 cut(s) 419
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 74, 271
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 3 cut(s) 15, 181, 236
Hpy8I GTNNAC 2 cut(s) 74, 271
Hpy99I CGWCG 2 cut(s) 12, 233
HpyAV CCTTC 2 cut(s) 284, 503
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 6 cut(s) 24, 298, 311, 347, 365, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 4 cut(s) 282, 369, 387, 408
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 4 cut(s) 11, 113, 232, 450
LmnI GCTCC 2 cut(s) 193, 286
LpnPI CCDG 8 cut(s) 20, 28, 90, 177, 194, 204, 249, 486
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 337
MalI GATC 4 cut(s) 13, 115, 234, 452
MboI GATC 4 cut(s) 11, 113, 232, 450
MboII GAAGA 3 cut(s) 167, 475, 496
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 198, 493
MluCI AATT 2 cut(s) 92, 263
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 7 cut(s) 15, 150, 171, 174, 277, 376, 453
MroI TCCGGA 1 cut(s) 14
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeI CATATG 1 cut(s) 330
NdeII GATC 4 cut(s) 11, 113, 232, 450
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 472
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 297, 403
PmaCI CACGTG 1 cut(s) 122
PmlI CACGTG 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 190
PspCI CACGTG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 74, 271
PsuI RGATCY 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 2 cut(s) 296, 402
Sau3AI GATC 4 cut(s) 11, 113, 232, 450
Sau96I GGNCC 2 cut(s) 74, 271
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 2 cut(s) 198, 493
SfaNI GCATC 1 cut(s) 374
SinI GGWCC 2 cut(s) 74, 271
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 2 cut(s) 92, 263
SsiI CCGC 2 cut(s) 47, 402
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 92, 263
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 412
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 74, 271
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.