Rmu_sc0004510.1_g000001

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004510.1
OG0015455
Physical Location & Seq
Forward (+)
1 .. 1984
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004510.1_g000001.1.cds

Sequence Viewer

Length: 455 bp
tagcggtttgtgggccggccctgtattggaggttcaagaagggtgttcagttgggtgctgccaaatcttcttgcccagcttgcaattgtgattgccctcctcctctgtccctgctcaaaatcgctcctggattggccaatctctcagtctcagattgcggaagtaatgacccagatctgaagcaggagatggagaagcagtttgtggacctcttaacagaagagttgaagctgcaggaagctgtcgccacggagcacacccgacacatgaacatcacatttgctgaggcaaaaagggtggctattcagtaccagagagaagcagaaaagtgcaatgctgcaacagaaacatgtgaggaagcaagagagcgtgccgaggcattgctcatcaaagagagaaaggtgacttccttgtgggaaagacgagcccgtcaagtgggttgggaaggggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

150

Amino Acids

16.7

Weight (kDa)

6.22

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30996
fragaria_vesca FvH4_1g01280
malus_domestica MD02G1010700.v1.1 MD15G1155600.v1.1
prunus_persica Prupe.7G259500_v2.0.a1
pyrus_communis pycom02g00960 pycom15g13960
rosa_chinensis RchiOBHm_Chr2g0086111
rosa_laevigata RLG00000015744
rosa_multiflora Rmu_sc0004510.1_g000001
rosa_roxburghii Rroxscaffold_2G00154800
rosa_rugosa Rorug01G0465800
rosa_samantha Rh2BG015500 Rh2CG016400 Rh2DG017500
rosa_wichuraiana Rw2G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AciI CCGC 2 cut(s) 4, 158
AcoI YGGCCR 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 26, 435
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 2 cut(s) 36, 228
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 79, 231, 241
AluI AGCT 3 cut(s) 79, 231, 241
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 3 cut(s) 13, 17, 134
ApeKI GCWGC 3 cut(s) 58, 231, 337
AspS9I GGNCC 3 cut(s) 13, 18, 207
AsuHPI GGTGA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 136
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 284
BbvI GCAGC 3 cut(s) 45, 218, 324
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 232
BglII AGATCT 1 cut(s) 174
BisI GCNGC 3 cut(s) 59, 232, 338
BlsI GCNGC 3 cut(s) 60, 233, 339
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 3 cut(s) 13, 18, 207
BmrFI CCNGG 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 248, 374
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 435
Bse118I RCCGGY 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 339, 379
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 248, 374
BseLI CCNNNNNNNGG 2 cut(s) 26, 435
BseMI GCAATG 2 cut(s) 339, 379
BseMII CTCAG 3 cut(s) 158, 164, 275
BseRI GAGGAG 2 cut(s) 89, 92
BseXI GCAGC 3 cut(s) 45, 218, 324
BseYI CCCAGC 1 cut(s) 75
BshFI GGCC 3 cut(s) 15, 19, 136
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 26, 435
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 3 cut(s) 15, 19, 136
Bsp1286I GDGCHC 2 cut(s) 257, 429
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 2 cut(s) 4, 158
BspANI GGCC 3 cut(s) 15, 19, 136
BspCNI CTCAG 3 cut(s) 157, 163, 276
BspMAI CTGCAG 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 339, 379
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 248, 374
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 17, 81, 371
BstDEI CTNAG 3 cut(s) 144, 150, 284
BstDSI CCRYGG 1 cut(s) 248
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 45, 218, 324
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 3 cut(s) 15, 19, 136
BtgI CCRYGG 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 17, 81, 371
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 13, 18, 207
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 278, 313
CviAII CATG 2 cut(s) 267, 350
CviJI RGCY 8 cut(s) 15, 19, 79, 136, 231, 241, 301, 427
CviKI_1 RGCY 8 cut(s) 15, 19, 79, 136, 231, 241, 301, 427
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 144, 150, 284
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 429
FaeI CATG 2 cut(s) 270, 353
FaiI YATR 3 cut(s) 268, 351, 453
FaqI GGGAC 1 cut(s) 93
FatI CATG 2 cut(s) 266, 349
Fnu4HI GCNGC 3 cut(s) 59, 232, 338
FriOI GRGCYC 1 cut(s) 429
FseI GGCCGGCC 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 59, 232, 338
GluI GCNGC 3 cut(s) 59, 232, 338
GsaI CCCAGC 1 cut(s) 79
HaeIII GGCC 3 cut(s) 15, 19, 136
HapII CCGG 1 cut(s) 16
Hin1II CATG 2 cut(s) 270, 353
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 414
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 153, 179
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 33, 439
HpyCH4V TGCA 4 cut(s) 83, 234, 332, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 144, 150, 284
Hsp92II CATG 2 cut(s) 270, 353
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 129, 252
Lsp1109I GCAGC 3 cut(s) 45, 218, 324
MaeIII GTNAC 1 cut(s) 402
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 59, 232
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 257, 429
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 136
MnlI CCTC 8 cut(s) 23, 107, 110, 113, 220, 279, 348, 369
Mox20I TGGCCA 1 cut(s) 136
MroNI GCCGGC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 136
MseI TTAA 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 136
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 80
NaeI GCCGGC 1 cut(s) 17
NdeII GATC 1 cut(s) 174
NgoMIV GCCGGC 1 cut(s) 15
NlaIII CATG 2 cut(s) 270, 353
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 402
NspI RCATGY 1 cut(s) 353
PciI ACATGT 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 60, 233, 339
PscI ACATGT 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 3 cut(s) 13, 18, 207
PsrI GAACNNNNNNTAC 2 cut(s) 16, 48
PstI CTGCAG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 174
RigI GGCCGGCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 3 cut(s) 59, 232, 338
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 3 cut(s) 13, 18, 207
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 2 cut(s) 257, 429
SetI ASST 6 cut(s) 34, 81, 212, 233, 243, 404
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 207
Sse9I AATT 1 cut(s) 84
SsiI CCGC 2 cut(s) 4, 158
StyD4I CCNGG 1 cut(s) 126
TasI AATT 1 cut(s) 84
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 3 cut(s) 58, 231, 337
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 207
XceI RCATGY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.