Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015455

Physical Location & Seq

Genomic Coordinates Forward (+)

9506961 .. 9508512

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCAAGGCGATCTGCTACCTGTTTGAGGTGCTGCTTGGTAGTGTTTGCGGTGGTTTCTGCATTGGGGGTTTGTGGGCCGGCCTTGTATTGGCGGTTCAAGAAGACCGTAAAGTTGGGGGGTTCTAAAGTCTCTTGCCCTTCTTGCAACTGCGATTGCCCCCCTCCTTTGTCCCTCCTCAAGATTGCTCCTGGATTGGCCAATCTCTCAGTCACAGATTGCGGAAGTAATGACCCAGATCTGAAGCGGGAGATGGAGAAGCAATTTGTGGACCTTTTAACAGAGGAATTGAAGCTGCAAGAGGCTGTTGCTGCAGAGCACACCCGACACATGAACATTACATTTGCTGAAGCAAAGAGGGTGGCTTCTCAGTACCAGAAAGAAGCAGAAAAGTGCAATGCTGCAACAGAAACTTGCGAGGAGGCGAGAGAGCGTGCTGAGGCATTGCTCATCAAGGAGAGGAAGGTGACTTTCCTGTGGGAAAGACGAGCCCGTCAAATGGGTTGGGCAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068

Protein Analysis

173

Amino Acids

19.16

Weight (kDa)

8.49

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30996
fragaria_vesca	FvH4_1g01280
malus_domestica	MD02G1010700.v1.1 MD15G1155600.v1.1
prunus_persica	Prupe.7G259500_v2.0.a1
pyrus_communis	pycom02g00960 pycom15g13960
rosa_chinensis	RchiOBHm_Chr2g0086111
rosa_laevigata	RLG00000015744
rosa_multiflora	Rmu_sc0004510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154800
rosa_rugosa	Rorug01G0465800
rosa_samantha	Rh2BG015500 Rh2CG016400 Rh2DG017500
rosa_wichuraiana	Rw2G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	492
AciI	CCGC	4 cut(s)	50, 94, 222, 247
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	263, 369
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	27, 90, 499
AgsI	TTSAA	2 cut(s)	100, 292
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	3 cut(s)	77, 81, 198
ApeKI	GCWGC	4 cut(s)	33, 295, 311, 401
AspS9I	GGNCC	2 cut(s)	77, 271
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	20, 282, 298, 388
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	312
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	4 cut(s)	34, 296, 312, 402
BlsI	GCNGC	4 cut(s)	35, 297, 313, 403
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	77, 271
BmrFI	CCNGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 90, 499
Bse118I	RCCGGY	1 cut(s)	79
Bse3DI	GCAATG	2 cut(s)	403, 443
BseBI	CCWGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	3 cut(s)	27, 90, 499
BseMI	GCAATG	2 cut(s)	403, 443
BseMII	CTCAG	3 cut(s)	222, 383, 429
BseRI	GAGGAG	2 cut(s)	167, 434
BseXI	GCAGC	4 cut(s)	20, 282, 298, 388
BshFI	GGCC	3 cut(s)	79, 83, 200
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	27, 90, 499
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	79, 83, 200
Bsp1286I	GDGCHC	2 cut(s)	321, 493
Bsp143I	GATC	2 cut(s)	11, 238
BspACI	CCGC	4 cut(s)	50, 94, 222, 247
BspANI	GGCC	3 cut(s)	79, 83, 200
BspCNI	CTCAG	3 cut(s)	221, 382, 430
BspMAI	CTGCAG	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	403, 443
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssMI	GATC	2 cut(s)	11, 238
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	81, 435
BstDEI	CTNAG	3 cut(s)	208, 369, 438
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	14, 241
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	11, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 311
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	20, 282, 298, 388
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	79, 83, 200
Cac8I	GCNNGC	2 cut(s)	81, 435
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	77, 271
Csp6I	GTAC	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	7 cut(s)	79, 83, 200, 295, 305, 365, 491
CviKI_1	RGCY	7 cut(s)	79, 83, 200, 295, 305, 365, 491
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	3 cut(s)	208, 369, 438
DpnI	GATC	2 cut(s)	13, 240
DpnII	GATC	2 cut(s)	11, 238
DrdI	GACNNNNNNGTC	1 cut(s)	492
DseDI	GACNNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	263, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	493
FaeI	CATG	1 cut(s)	334
FaiI	YATR	1 cut(s)	332
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	34, 296, 312, 402
FriOI	GRGCYC	1 cut(s)	493
FseI	GGCCGGCC	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	34, 296, 312, 402
GluI	GCNGC	4 cut(s)	34, 296, 312, 402
HaeIII	GGCC	3 cut(s)	79, 83, 200
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	1 cut(s)	334
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	100, 181
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	150, 457
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	62, 147, 298, 314, 396, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 311
HpyF3I	CTNAG	3 cut(s)	208, 369, 438
Hsp92II	CATG	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	11, 238
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	8 cut(s)	34, 93, 177, 204, 249, 389, 488, 495
Lsp1109I	GCAGC	4 cut(s)	20, 282, 298, 388
MaeIII	GTNAC	2 cut(s)	211, 466
MalI	GATC	2 cut(s)	13, 240
MboI	GATC	2 cut(s)	11, 238
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	321, 493
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	263, 287
MluNI	TGGCCA	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	144, 311
NaeI	GCCGGC	1 cut(s)	81
NdeII	GATC	2 cut(s)	11, 238
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	211, 466
PdiI	GCCGGC	1 cut(s)	81
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	35, 297, 313, 403
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	77, 271
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	238
RigI	GGCCGGCC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	4 cut(s)	34, 296, 312, 402
Sau3AI	GATC	2 cut(s)	11, 238
Sau96I	GGNCC	2 cut(s)	77, 271
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	321, 493
SetI	ASST	5 cut(s)	23, 32, 276, 297, 468
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	263, 287
SsiI	CCGC	4 cut(s)	50, 94, 222, 247
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	2 cut(s)	263, 287
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	2 cut(s)	211, 466
TseI	GCWGC	4 cut(s)	33, 295, 311, 401
Tsp45I	GTSAC	2 cut(s)	211, 466
TspDTI	ATGAA	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.