FvH4_1g01280

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015455
Physical Location & Seq
Forward (+)
640781 .. 643449
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01280.t1

Sequence Viewer

Length: 522 bp
ATGACAAGGCCGCGATCTGCCACTTGTTTGAGGTGTTGCCTGGTGGTGTTTGCGGTGGTTTCAGCCTTAGCGGTTTGTGGGCCGGCTCTCTATTGGAGGTTCAAGAAGGGTGTTAAGTTGGGTGATGCCAAATCTTCTTGCCCAGCTTGTAATTGTGATTGCCCTGTTCCTTTGTCCCTGCTCAAAATTGCTCCCGGATTGGCGAATCTCTCAGTGTCAGATTGCGGAAGTAATGACCCAGATGTGAAGCAGGAGATGGAGAAGCAGTTTGTGGACCTTCTGACAGAAGAGTTGAAGCTGCAGGAAGCTGTTGCTGCTGAGCACACCCGACACATGAACATTACATTTGCTGAAGCTAAAAGGGTGGCTATTCAGTACCAGAGAGAAGCAGAAAAGTGCAATGCTGCAACAGAAACATGTGAGGAGGCAAGAGAGCGTTCCGAGGCATTGCTCATAAAGGAGAGAAAGGTGACTTCCTTGTGGGAAAGACGAGCCCGTCAAGTGGGTTGGGAAGGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

174

Amino Acids

19.23

Weight (kDa)

7.46

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 8 - 171 2.3e-71 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30996
fragaria_vesca FvH4_1g01280
malus_domestica MD02G1010700.v1.1 MD15G1155600.v1.1
prunus_persica Prupe.7G259500_v2.0.a1
pyrus_communis pycom02g00960 pycom15g13960
rosa_chinensis RchiOBHm_Chr2g0086111
rosa_laevigata RLG00000015744
rosa_multiflora Rmu_sc0004510.1_g000001
rosa_roxburghii Rroxscaffold_2G00154800
rosa_rugosa Rorug01G0465800
rosa_samantha Rh2BG015500 Rh2CG016400 Rh2DG017500
rosa_wichuraiana Rw2G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 495
AccII CGCG 1 cut(s) 13
AciI CCGC 4 cut(s) 11, 53, 71, 225
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 502
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 103, 295
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 4 cut(s) 146, 298, 308, 356
AluI AGCT 4 cut(s) 146, 298, 308, 356
Alw21I GWGCWC 1 cut(s) 324
AoxI GGCC 2 cut(s) 8, 80
ApeKI GCWGC 3 cut(s) 298, 314, 404
AspS9I GGNCC 2 cut(s) 80, 274
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 134, 481
AvaII GGWCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 285, 301, 391
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 299
BisI GCNGC 4 cut(s) 11, 299, 315, 405
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 4 cut(s) 12, 300, 316, 406
Bme1390I CCNGG 2 cut(s) 41, 195
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 80, 274
BmrFI CCNGG 2 cut(s) 41, 195
BmsI GCATC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 1 cut(s) 82
Bse3DI GCAATG 2 cut(s) 406, 446
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMI GCAATG 2 cut(s) 406, 446
BseMII CTCAG 2 cut(s) 225, 309
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 3 cut(s) 285, 301, 391
BseYI CCCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 2 cut(s) 10, 82
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 83, 195
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 10, 82
Bsp1286I GDGCHC 2 cut(s) 324, 496
Bsp143I GATC 1 cut(s) 14
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 4 cut(s) 11, 53, 71, 225
BspANI GGCC 2 cut(s) 10, 82
BspCNI CTCAG 2 cut(s) 224, 310
BspFNI CGCG 1 cut(s) 13
BspMAI CTGCAG 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 406, 446
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 67, 211, 318
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 39, 193
BstSFI CTRYAG 1 cut(s) 299
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 285, 301, 391
BsuRI GGCC 2 cut(s) 10, 82
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 80, 274
Csp6I GTAC 1 cut(s) 376
CviAII CATG 2 cut(s) 334, 417
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 67, 211, 318
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DrdI GACNNNNNNGTC 1 cut(s) 495
DseDI GACNNNNNNGTC 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 496
FaeI CATG 2 cut(s) 337, 420
FaiI YATR 3 cut(s) 335, 418, 455
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 333, 416
Fnu4HI GCNGC 4 cut(s) 11, 299, 315, 405
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 4 cut(s) 11, 299, 315, 405
GluI GCNGC 4 cut(s) 11, 299, 315, 405
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 10, 82
HapII CCGG 2 cut(s) 83, 195
Hin1II CATG 2 cut(s) 337, 420
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 83, 195
HphI GGTGA 2 cut(s) 134, 481
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 220, 282, 442
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 3 cut(s) 100, 287, 506
HpyCH4V TGCA 3 cut(s) 301, 399, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 67, 211, 318
Hsp92II CATG 2 cut(s) 337, 420
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 285, 301, 391
LweI GCATC 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 469
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 2 cut(s) 126, 299
MhlI GDGCHC 2 cut(s) 324, 496
MluCI AATT 2 cut(s) 151, 186
MnlI CCTC 5 cut(s) 24, 90, 415, 418, 436
MroNI GCCGGC 1 cut(s) 82
MseI TTAA 1 cut(s) 114
MspI CCGG 2 cut(s) 83, 195
MspR9I CCNGG 2 cut(s) 41, 195
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 314
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 195
NdeII GATC 1 cut(s) 14
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 2 cut(s) 337, 420
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 1 cut(s) 420
PciI ACATGT 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 193
PkrI GCNGC 4 cut(s) 12, 300, 316, 406
PscI ACATGT 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 39
PspPI GGNCC 2 cut(s) 80, 274
PstI CTGCAG 1 cut(s) 303
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 4 cut(s) 11, 299, 315, 405
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 80, 274
ScrFI CCNGG 2 cut(s) 41, 195
SduI GDGCHC 2 cut(s) 324, 496
SetI ASST 8 cut(s) 35, 101, 148, 279, 300, 310, 358, 471
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 274
Sse9I AATT 2 cut(s) 151, 186
SsiI CCGC 4 cut(s) 11, 53, 71, 225
StyD4I CCNGG 2 cut(s) 39, 193
TasI AATT 2 cut(s) 151, 186
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 298, 314, 404
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 274
XceI RCATGY 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.