Rorug01G0465800

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004372
Physical Location & Seq
Reverse (-)
55846263 .. 55850069
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0465800.1

Sequence Viewer

Length: 1545 bp
ATGGATATCACTTTTATAGTGCATATTATCTATCGGATTCGTGAAGCTATGATCGCTGCAGCCCCCGATAAGATGGCTGCCCCCGATAAGATGGCTAACCAGGAAGAATCGAAGTCTTCCGATTTCTTTAAAGGACCCTTCTTTAAACGTGTCGGTGCAATAGTTGACAATTTGTCATGGCGCTCTCTCATAACTGACATTCTAGCTGTTCTTCCTATCCCACAGGTGCTACTACTTGTTGTCTTCTTTAAAATGAGAGGCTCTGGATATTTGAACCACAGAAAGATTTTGAATTTCTTTCTTCTCCTTCAATATTTGGCAAGAATTTATCGTATTCACCTATCTTCCAAAAAACTTACAAAGAGTCATGGAATATGGATTAAAGGACTATTCAATTTATTTCTCTATATCTTTGCAAGTCACGTACTTGGAGCCTTTTGGTATTTCTTTTCGATTCAACGAGAGACATCATGTTGGCATCGAAGTTGCGGTGACAAGTGTATAAGTACCTTTTATTGTGATGAGTACAAACATTCAAAAAATATGGTGACACTTATAACATATCTGAATGCATCGTGCCCTATAAATACTACTGAACCATTTGATTTTGGAATATTTCTTGATTCTCTAAAGTCCAATAACTCGACATCAACCAACTTTCCACAAAAGTTGTGTTACTCTTTTTGGTGGGGTCTACGAAATTTGAGTAATTTTGGCACGAATCTTGTAACAAGTAACTATGTATGGGAGAATTTATTCGCAATTCTTATTTCTATCATTGGCTTGTTACTGTTTTTGTACCTCATCGGAAATGTGCAGACATTTATGTCTATGGGAACTGCAAAGTCAGAGGAGATAAGAAGGAAGATCAAATCAAAAAAGAAAGATATGAAAGTGTGGATGGAGAAAAATTGCCTCCCTGCTAAGTTGAGGAAAGAAATCATGGCAAATATAAGAGAAAAATTAGAACAAGACAAGCATGCTGACATGGGGGATCTGTACTTCATTCTTCCCTCGTCAACCAAAAAATCTCTAAAGCGTGCTCTCTGCATGAGTACACTGAGAAAACCTGTGACATACCCTGAGCATCACTATGTTGCCAAGGTGGATGAACCAGTTGATCAGATGGTGCTTGTCAAAGAAGGAACTATGTGGATCTACTCGTCGAATACTAGTACTCCATCCAAGATCCACAGGACGGTTGAGAACGGTGGCATTTATGGAGATGAACAACTTCTGAGTTGGGTGTCGAAGGACACGCAACACGTCTCGTTTGCAAACCTCCCGATCTCAAAAGAAAATGTGAAATGTCATACAAAAGTGGTAGGGTTTGCTATCGCGGCCCAGGACTTGAAAGATGTCGCCACCAAGTGCAAAATGCTTTGGAATTACGATGATCTTCGAGAGGAGAGGGTGGCGAGCTCTACCACAGGAAGGACATTCCGTCGAAACCGCAATAACCCAAATAGGTCGGCTACCGTAGGAGTAGGAGCTGCGACCTCGTCAAGAACAGGAATTGAGTATCTGCAGATCGAGAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

514

Amino Acids

59.04

Weight (kDa)

9.51

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 64 - 279 7.4e-11 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AasI GACNNNNNNGTC 1 cut(s) 826
AccI GTMKAC 1 cut(s) 694
AccII CGCG 1 cut(s) 1340
AciI CCGC 3 cut(s) 489, 1340, 1453
AclWI GGATC 3 cut(s) 1002, 1163, 1183
AcsI RAATTY 4 cut(s) 292, 324, 700, 751
AdeI CACNNNGTG 1 cut(s) 1371
AfaI GTAC 7 cut(s) 426, 508, 527, 800, 1001, 1057, 1177
AfiI CCNNNNNNNGG 2 cut(s) 1198, 1434
AflIII ACRYGT 2 cut(s) 148, 1264
AgsI TTSAA 7 cut(s) 274, 292, 311, 394, 458, 537, 1354
AhdI GACNNNNNGTC 2 cut(s) 172, 1443
AhlI ACTAGT 1 cut(s) 1172
AjiI CACGTC 1 cut(s) 1267
AjnI CCWGG 2 cut(s) 99, 1344
AluBI AGCT 4 cut(s) 47, 206, 1422, 1493
AluI AGCT 4 cut(s) 47, 206, 1422, 1493
Alw21I GWGCWC 2 cut(s) 1045, 1424
Alw26I GTCTC 2 cut(s) 458, 1273
AlwI GGATC 3 cut(s) 1002, 1163, 1183
AoxI GGCC 1 cut(s) 1341
ApeKI GCWGC 4 cut(s) 56, 59, 77, 1493
ApoI RAATTY 4 cut(s) 292, 324, 700, 751
Asp700I GAANNNNTTC 2 cut(s) 755, 1233
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 2 cut(s) 134, 1342
AsuHPI GGTGA 3 cut(s) 329, 503, 559
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 581
BanII GRGCYC 1 cut(s) 1424
BbsI GAAGAC 2 cut(s) 108, 235
Bbv12I GWGCWC 2 cut(s) 1045, 1424
BbvI GCAGC 4 cut(s) 43, 64, 71, 1480
BccI CCATC 5 cut(s) 67, 85, 895, 1120, 1189
BciT130I CCWGG 2 cut(s) 101, 1346
BclI TGATCA 1 cut(s) 1120
BcoDI GTCTC 2 cut(s) 458, 1273
BcuI ACTAGT 1 cut(s) 1172
BfaI CTAG 2 cut(s) 203, 1173
BfmI CTRYAG 2 cut(s) 57, 1526
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 5 cut(s) 57, 60, 78, 1341, 1494
BlsI GCNGC 5 cut(s) 58, 61, 79, 1342, 1495
BmcAI AGTACT 1 cut(s) 1177
Bme1390I CCNGG 2 cut(s) 101, 1346
Bme18I GGWCC 1 cut(s) 134
BmeRI GACNNNNNGTC 2 cut(s) 172, 1443
BmgBI CACGTC 1 cut(s) 1267
BmgT120I GGNCC 2 cut(s) 134, 1342
BmiI GGNNCC 2 cut(s) 136, 433
BmrFI CCNGG 2 cut(s) 101, 1346
BmsI GCATC 3 cut(s) 487, 581, 1096
BpiI GAAGAC 2 cut(s) 108, 235
Bpu10I CCTNAGC 1 cut(s) 1083
BsaAI YACGTR 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 1101, 1344
BsaXI ACNNNNNCTCC 2 cut(s) 1162, 1192
Bsc4I CCNNNNNNNGG 2 cut(s) 1198, 1434
Bse1I ACTGG 1 cut(s) 1115
BseBI CCWGG 2 cut(s) 101, 1346
BseDI CCNNGG 2 cut(s) 1101, 1344
BseGI GGATG 3 cut(s) 906, 1114, 1181
BseLI CCNNNNNNNGG 2 cut(s) 1198, 1434
BseMII CTCAG 3 cut(s) 1052, 1074, 1229
BseNI ACTGG 1 cut(s) 1115
BseRI GAGGAG 2 cut(s) 866, 1421
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 4 cut(s) 43, 64, 71, 1480
BsgI GTGCAG 1 cut(s) 836
Bsh1236I CGCG 1 cut(s) 1340
BshFI GGCC 1 cut(s) 1343
BsiHKAI GWGCWC 2 cut(s) 1045, 1424
BslI CCNNNNNNNGG 2 cut(s) 1198, 1434
BsmAI GTCTC 2 cut(s) 458, 1273
BsmBI CGTCTC 1 cut(s) 1273
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 1 cut(s) 1343
Bsp1286I GDGCHC 3 cut(s) 581, 1045, 1424
Bsp143I GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
BspACI CCGC 3 cut(s) 489, 1340, 1453
BspANI GGCC 1 cut(s) 1343
BspCNI CTCAG 3 cut(s) 1053, 1075, 1230
BspFNI CGCG 1 cut(s) 1340
BspLI GGNNCC 2 cut(s) 136, 433
BspMAI CTGCAG 2 cut(s) 61, 1530
BspPI GGATC 3 cut(s) 1002, 1163, 1183
BsrI ACTGG 1 cut(s) 1115
BssECI CCNNGG 2 cut(s) 1101, 1344
BssMI GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
BssT1I CCWWGG 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 101, 1346
Bst4CI ACNGT 4 cut(s) 792, 1201, 1211, 1480
BstBAI YACGTR 1 cut(s) 424
BstC8I GCNNGC 3 cut(s) 981, 1041, 1420
BstDEI CTNAG 4 cut(s) 924, 1061, 1083, 1238
BstF5I GGATG 3 cut(s) 906, 1114, 1181
BstFNI CGCG 1 cut(s) 1340
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 9 cut(s) 54, 870, 997, 1123, 1158, 1191, 1290, 1399, 1533
BstMAI GTCTC 2 cut(s) 458, 1273
BstMBI GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
BstMWI GCNNNNNNNGC 2 cut(s) 53, 1340
BstNI CCWGG 2 cut(s) 101, 1346
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 2 cut(s) 99, 1344
BstSFI CTRYAG 2 cut(s) 57, 1526
BstSLI GKGCMC 1 cut(s) 581
BstUI CGCG 1 cut(s) 1340
BstV1I GCAGC 4 cut(s) 43, 64, 71, 1480
BstV2I GAAGAC 2 cut(s) 108, 235
BstX2I RGATCY 3 cut(s) 994, 1155, 1188
BstYI RGATCY 3 cut(s) 994, 1155, 1188
BsuRI GGCC 1 cut(s) 1343
BtrI CACGTC 1 cut(s) 1267
BtsCI GGATG 3 cut(s) 906, 1114, 1181
BtsIMutI CAGTG 1 cut(s) 1058
Cac8I GCNNGC 3 cut(s) 981, 1041, 1420
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 134, 1342
Csp6I GTAC 7 cut(s) 425, 507, 526, 799, 1000, 1056, 1176
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 7 cut(s) 177, 368, 471, 943, 980, 988, 1051
CviQI GTAC 7 cut(s) 425, 507, 526, 799, 1000, 1056, 1176
DdeI CTNAG 4 cut(s) 924, 1061, 1083, 1238
DpnI GATC 9 cut(s) 53, 869, 996, 1122, 1157, 1190, 1289, 1398, 1532
DpnII GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
DraI TTTAAA 3 cut(s) 130, 145, 250
DraIII CACNNNGTG 1 cut(s) 1371
DrdI GACNNNNNNGTC 1 cut(s) 826
DriI GACNNNNNGTC 2 cut(s) 172, 1443
DseDI GACNNNNNNGTC 1 cut(s) 826
Eam1105I GACNNNNNGTC 2 cut(s) 172, 1443
Ecl136II GAGCTC 1 cut(s) 1422
Eco130I CCWWGG 1 cut(s) 1101
Eco24I GRGCYC 1 cut(s) 1424
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 1422
EcoICRI GAGCTC 1 cut(s) 1422
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 99, 1344
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 1101
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 1424
ErhI CCWWGG 1 cut(s) 1101
Esp3I CGTCTC 1 cut(s) 1273
FaeI CATG 7 cut(s) 180, 371, 474, 946, 983, 991, 1054
FatI CATG 7 cut(s) 176, 367, 470, 942, 979, 987, 1050
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 5 cut(s) 57, 60, 78, 1341, 1494
FokI GGATG 3 cut(s) 913, 1121, 1168
FriOI GRGCYC 1 cut(s) 1424
Fsp4HI GCNGC 5 cut(s) 57, 60, 78, 1341, 1494
FspBI CTAG 2 cut(s) 203, 1173
GlaI GCGC 1 cut(s) 182
GluI GCNGC 5 cut(s) 57, 60, 78, 1341, 1494
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 1 cut(s) 1343
HhaI GCGC 1 cut(s) 183
Hin1II CATG 7 cut(s) 180, 371, 474, 946, 983, 991, 1054
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HincII GTYRAC 2 cut(s) 166, 1020
HindII GTYRAC 2 cut(s) 166, 1020
HinfI GANTC 6 cut(s) 37, 107, 364, 454, 623, 721
HphI GGTGA 3 cut(s) 329, 503, 559
Hpy166II GTNNAC 4 cut(s) 166, 695, 1020, 1058
Hpy188I TCNGA 7 cut(s) 36, 121, 567, 809, 850, 1125, 1239
Hpy188III TCNNGA 7 cut(s) 41, 264, 620, 1285, 1403, 1506, 1534
Hpy8I GTNNAC 4 cut(s) 166, 695, 1020, 1058
Hpy99I CGWCG 2 cut(s) 1168, 1449
HpyAV CCTTC 6 cut(s) 148, 317, 855, 1136, 1246, 1428
HpyCH4III ACNGT 4 cut(s) 792, 1201, 1211, 1480
HpyCH4IV ACGT 3 cut(s) 148, 423, 1266
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 1340
HpyF3I CTNAG 4 cut(s) 924, 1061, 1083, 1238
HpySE526I ACGT 3 cut(s) 148, 423, 1266
Hsp92II CATG 7 cut(s) 180, 371, 474, 946, 983, 991, 1054
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
LmnI GCTCC 2 cut(s) 431, 1490
Lsp1109I GCAGC 4 cut(s) 43, 64, 71, 1480
LweI GCATC 3 cut(s) 487, 581, 1096
MaeI CTAG 2 cut(s) 203, 1173
MaeII ACGT 3 cut(s) 148, 423, 1266
MaeIII GTNAC 8 cut(s) 419, 491, 547, 674, 727, 734, 786, 1072
MalI GATC 9 cut(s) 53, 869, 996, 1122, 1157, 1190, 1289, 1398, 1532
MboI GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
MboII GAAGA 9 cut(s) 108, 116, 203, 235, 293, 336, 877, 1001, 1391
MflI RGATCY 3 cut(s) 994, 1155, 1188
MhlI GDGCHC 3 cut(s) 581, 1045, 1424
MlyI GAGTC 1 cut(s) 373
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 2 cut(s) 755, 1233
MseI TTAA 4 cut(s) 129, 144, 249, 381
MslI CAYNNNNRTG 1 cut(s) 1092
MspR9I CCNGG 2 cut(s) 101, 1346
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 2 cut(s) 101, 1346
MvnI CGCG 1 cut(s) 1340
MwoI GCNNNNNNNGC 2 cut(s) 53, 1340
NdeII GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
NlaIII CATG 7 cut(s) 180, 371, 474, 946, 983, 991, 1054
NlaIV GGNNCC 2 cut(s) 136, 433
NmuCI GTSAC 4 cut(s) 419, 491, 547, 1072
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 983
PaeI GCATGC 1 cut(s) 983
PctI GAATGC 1 cut(s) 574
PdmI GAANNNNTTC 2 cut(s) 755, 1233
PfeI GAWTC 5 cut(s) 37, 107, 454, 623, 721
PflFI GACNNNGTC 1 cut(s) 1501
PkrI GCNGC 5 cut(s) 58, 61, 79, 1342, 1495
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Ppu21I YACGTR 1 cut(s) 424
PpuMI RGGWCCY 1 cut(s) 134
PsiI TTATAA 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 1424
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 99, 1344
PspGI CCWGG 2 cut(s) 99, 1344
PspN4I GGNNCC 2 cut(s) 136, 433
PspPI GGNCC 2 cut(s) 134, 1342
PspPPI RGGWCCY 1 cut(s) 134
PstI CTGCAG 2 cut(s) 61, 1530
PsuI RGATCY 3 cut(s) 994, 1155, 1188
PsyI GACNNNGTC 1 cut(s) 1501
RsaI GTAC 7 cut(s) 426, 508, 527, 800, 1001, 1057, 1177
RsaNI GTAC 7 cut(s) 425, 507, 526, 799, 1000, 1056, 1176
RseI CAYNNNNRTG 1 cut(s) 1092
SacI GAGCTC 1 cut(s) 1424
SaqAI TTAA 4 cut(s) 129, 144, 249, 381
SatI GCNGC 5 cut(s) 57, 60, 78, 1341, 1494
Sau3AI GATC 9 cut(s) 51, 867, 994, 1120, 1155, 1188, 1287, 1396, 1530
Sau96I GGNCC 2 cut(s) 134, 1342
ScaI AGTACT 1 cut(s) 1177
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 2 cut(s) 101, 1346
SduI GDGCHC 3 cut(s) 581, 1045, 1424
SfaNI GCATC 3 cut(s) 487, 581, 1096
SfcI CTRYAG 2 cut(s) 57, 1526
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 1092
SpeI ACTAGT 1 cut(s) 1172
SphI GCATGC 1 cut(s) 983
SsiI CCGC 3 cut(s) 489, 1340, 1453
SspI AATATT 2 cut(s) 314, 615
SspMI CTAG 2 cut(s) 203, 1173
SstI GAGCTC 1 cut(s) 1424
StyD4I CCNGG 2 cut(s) 99, 1344
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 4 cut(s) 792, 1201, 1211, 1480
TaiI ACGT 3 cut(s) 151, 426, 1269
TaqI TCGA 9 cut(s) 110, 452, 481, 644, 1166, 1250, 1402, 1447, 1533
TatI WGTACW 4 cut(s) 525, 999, 1055, 1175
TauI GCSGC 1 cut(s) 1343
TfiI GAWTC 5 cut(s) 37, 107, 454, 623, 721
Tru1I TTAA 4 cut(s) 129, 144, 249, 381
Tru9I TTAA 4 cut(s) 129, 144, 249, 381
TscAI CASTG 1 cut(s) 1065
TseFI GTSAC 4 cut(s) 419, 491, 547, 1072
TseI GCWGC 4 cut(s) 56, 59, 77, 1493
Tsp45I GTSAC 4 cut(s) 419, 491, 547, 1072
TspDTI ATGAA 4 cut(s) 905, 994, 1125, 1242
TspGWI ACGGA 1 cut(s) 1433
TspRI CASTG 1 cut(s) 1065
Tth111I GACNNNGTC 1 cut(s) 1501
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 4 cut(s) 292, 324, 700, 751
XceI RCATGY 1 cut(s) 983
XmiI GTMKAC 1 cut(s) 694
XmnI GAANNNNTTC 2 cut(s) 755, 1233
XspI CTAG 2 cut(s) 203, 1173
ZrmI AGTACT 1 cut(s) 1177
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.