Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004372

Physical Location & Seq

Genomic Coordinates Forward (+)

9512777 .. 9513349

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATCACCATTCTGCATCTACTCAGAATAGGCAGCAGCAGTACACCCCTCAATTCAGCCAACATTTCCAACCCGAAAATAGCCACCCATCCGTCCCTCAGTTCATTGAATTTCCATTTGTGAGTTCCGACCAAACAGCGTTGATGAAATTTAATAACCCGGAACCAGCAGCATCACCTAGCAGCATGGGTTACATGCCAGTGGTTGGAGATTCACATTTTTCAGGAGATTGGACGAGGCCAAACTACGGGAATGGATTGGACGATTTTGTTGCTGATGAAATCCGGATCAGGAGTTCAGAGATGTTGGAGGGTGATGACATGCAAAGACTGCTCAAGACGTTTAGTCTGGGAGTCGGCGTAGGAGCAGGAGGAGCTGGTTTTGGTGCTTCTGATGACTCGTGTTATAATTACAGTGTACAATATGAGCCTCAGCCGTTCAGGAAAGAGCACACGAAGAGCTCAGGGAAGGCTGTTGTCGGGTGGCTTAAGCTCAAAGCTGCGTTAAGGTGGGGGATTTTTATTAGGAAGAGAGTTGCAGAAAGGAGAGCTCAGCTTACAGAGCTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

191

Amino Acids

21.27

Weight (kDa)

6.06

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18750 AT2G18750 AT2G18750 AT2G24300 AT2G24300 AT2G24300 AT4G25800 AT4G25800 AT4G31000 AT4G31000
fragaria_vesca	FvH4_1g01290 FvH4_1g01290 FvH4_1g01290 FvH4_1g01290
malus_domestica	MD02G1010800.v1.1 MD15G1155700.v1.1
prunus_persica	Prupe.7G259400_v2.0.a1 Prupe.7G259400_v2.0.a1 Prupe.7G259400_v2.0.a1
pyrus_communis	pycom02g00970 pycom15g13970 pycom15g13980
rosa_chinensis	RchiOBHm_Chr2g0086121
rosa_laevigata	RLG00000015745
rosa_multiflora	Rmu_sc0004510.1_g000002
rosa_roxburghii	Rroxscaffold_2G00154790
rosa_rugosa	Rorug01G0465800
rosa_samantha	Rh2AG015500 Rh2BG015600 Rh2CG016500 Rh2DG017600
rosa_wichuraiana	Rw2G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	285
AclWI	GGATC	2 cut(s)	12, 296
AcsI	RAATTY	2 cut(s)	110, 149
AfaI	GTAC	2 cut(s)	44, 420
AfiI	CCNNNNNNNGG	2 cut(s)	206, 248
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	7 cut(s)	377, 462, 493, 500, 551, 556, 565
AluI	AGCT	7 cut(s)	377, 462, 493, 500, 551, 556, 565
Alw21I	GWGCWC	3 cut(s)	453, 464, 553
AlwI	GGATC	2 cut(s)	12, 296
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	5 cut(s)	34, 37, 170, 183, 500
ApoI	RAATTY	2 cut(s)	110, 149
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	168, 326
BanII	GRGCYC	2 cut(s)	464, 553
BauI	CACGAG	1 cut(s)	400
Bbv12I	GWGCWC	3 cut(s)	453, 464, 553
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	5 cut(s)	46, 49, 182, 195, 487
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BcnI	CCSGG	1 cut(s)	161
BfaI	CTAG	2 cut(s)	180, 566
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	36, 39, 172, 185, 502
Bme1390I	CCNGG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	26, 182
Bpu10I	CCTNAGC	2 cut(s)	432, 463
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 248
Bse1I	ACTGG	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	285
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	206, 248
BseMII	CTCAG	5 cut(s)	38, 113, 446, 477, 566
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	5 cut(s)	46, 49, 182, 195, 487
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	3 cut(s)	453, 464, 553
BsiSI	CCGG	2 cut(s)	161, 286
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	206, 248
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	453, 464, 553
Bsp13I	TCCGGA	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	4, 288
Bsp1720I	GCTNAGC	1 cut(s)	552
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	5 cut(s)	37, 112, 445, 476, 565
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	12, 296
BspQI	GCTCTTC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	4, 288
BssSI	CACGAG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	2 cut(s)	452, 524
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	418
BstDEI	CTNAG	5 cut(s)	24, 99, 432, 463, 552
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	7, 291
BstMBI	GATC	2 cut(s)	4, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 374, 562
BstNSI	RCATGY	2 cut(s)	199, 325
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	5 cut(s)	46, 49, 182, 195, 487
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	207, 421
Csp6I	GTAC	2 cut(s)	43, 419
CviAII	CATG	3 cut(s)	187, 196, 322
CviQI	GTAC	2 cut(s)	43, 419
DdeI	CTNAG	5 cut(s)	24, 99, 432, 463, 552
DpnI	GATC	2 cut(s)	6, 290
DpnII	GATC	2 cut(s)	4, 288
DriI	GACNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	452, 524
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	2 cut(s)	452, 524
Ecl136II	GAGCTC	2 cut(s)	462, 551
Eco24I	GRGCYC	2 cut(s)	464, 553
Eco53kI	GAGCTC	2 cut(s)	462, 551
EcoICRI	GAGCTC	2 cut(s)	462, 551
EcoT38I	GRGCYC	2 cut(s)	464, 553
FaeI	CATG	3 cut(s)	190, 199, 325
FaiI	YATR	5 cut(s)	188, 197, 323, 408, 426
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	186, 195, 321
Fnu4HI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	2 cut(s)	464, 553
Fsp4HI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
FspBI	CTAG	2 cut(s)	180, 566
GluI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	161, 286
Hin1II	CATG	3 cut(s)	190, 199, 325
HinfI	GANTC	3 cut(s)	212, 354, 398
HpaII	CCGG	2 cut(s)	161, 286
HphI	GGTGA	2 cut(s)	168, 326
Hpy166II	GTNNAC	2 cut(s)	45, 419
Hpy188I	TCNGA	4 cut(s)	27, 130, 301, 394
Hpy188III	TCNNGA	5 cut(s)	225, 286, 292, 337, 442
Hpy8I	GTNNAC	2 cut(s)	45, 419
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	17, 325, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 374, 562
HpyF3I	CTNAG	5 cut(s)	24, 99, 432, 463, 552
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	190, 199, 325
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	4, 288
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	2 cut(s)	365, 374
Lsp1109I	GCAGC	5 cut(s)	46, 49, 182, 195, 487
LweI	GCATC	2 cut(s)	26, 182
MaeI	CTAG	2 cut(s)	180, 566
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	6, 290
MboI	GATC	2 cut(s)	4, 288
MboII	GAAGA	2 cut(s)	469, 541
MhlI	GDGCHC	3 cut(s)	453, 464, 553
MluCI	AATT	4 cut(s)	53, 110, 149, 409
MlyI	GAGTC	2 cut(s)	363, 392
MmeI	TCCRAC	4 cut(s)	94, 153, 187, 288
MnlI	CCTC	6 cut(s)	60, 108, 231, 304, 365, 441
MroI	TCCGGA	1 cut(s)	285
MseI	TTAA	3 cut(s)	153, 489, 506
MslI	CAYNNNNRTG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	161, 286
MspR9I	CCNGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	331, 374, 562
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	4, 288
NlaIII	CATG	3 cut(s)	190, 199, 325
NlaIV	GGNNCC	1 cut(s)	165
NspI	RCATGY	2 cut(s)	199, 325
PciSI	GCTCTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	36, 39, 172, 185, 502
PleI	GAGTC	2 cut(s)	362, 392
PpsI	GAGTC	2 cut(s)	362, 392
PsiI	TTATAA	1 cut(s)	408
Psp124BI	GAGCTC	2 cut(s)	464, 553
PspN4I	GGNNCC	1 cut(s)	165
RsaI	GTAC	2 cut(s)	44, 420
RsaNI	GTAC	2 cut(s)	43, 419
RseI	CAYNNNNRTG	1 cut(s)	200
SacI	GAGCTC	2 cut(s)	464, 553
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	153, 489, 506
SatI	GCNGC	5 cut(s)	35, 38, 171, 184, 501
Sau3AI	GATC	2 cut(s)	4, 288
SchI	GAGTC	2 cut(s)	363, 392
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	3 cut(s)	453, 464, 553
SfaNI	GCATC	2 cut(s)	26, 182
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	335, 488
SmoI	CTYRAG	2 cut(s)	335, 488
Sse9I	AATT	4 cut(s)	53, 110, 149, 409
SspMI	CTAG	2 cut(s)	180, 566
SstI	GAGCTC	2 cut(s)	464, 553
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	344
TasI	AATT	4 cut(s)	53, 110, 149, 409
TatI	WGTACW	2 cut(s)	42, 418
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	153, 489, 506
Tru9I	TTAA	3 cut(s)	153, 489, 506
TscAI	CASTG	2 cut(s)	207, 421
TseI	GCWGC	5 cut(s)	34, 37, 170, 183, 500
TspDTI	ATGAA	3 cut(s)	94, 161, 294
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	207, 421
Van91I	CCANNNNNTGG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	488
XapI	RAATTY	2 cut(s)	110, 149
XceI	RCATGY	2 cut(s)	199, 325
XspI	CTAG	2 cut(s)	180, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.