Rh2DG017500

Protein of unknown function (DUF1068)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015455
Physical Location & Seq
Forward (+)
1009003 .. 1011228
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG017500.1

Sequence Viewer

Length: 519 bp
ATGTCAAGGCGATCTGCCACTTGTTTGAGGTGTTGCTTGGTGGTGTTTGCGGTGGTTTCAGCTCTAGCGGTTTGTGGGCCGGCCCTGTATTGGAGGTTCAAGAAGGGTGTTCAGTTGGGTGCTGCCAAATCTTCTTGCCCAGCTTGCAATTGTGATTGCCCTCCTCCTCTGTCCCTGCTCAAAATCGCTCCTGGATTGGCCAATCTCTCAGTCTCAGATTGCGGAAGTAATGACCCAGATCTGAAGCAGGAGATGGAGAAGCAGTTTGTGGACCTCTTAACAGAAGAGTTGAAGCTGCAGGAAGCTGTCGCCACGGAGCACACCCGACACATGAACATCACATTTGCTGAGGCAAAAAGGGTGGCTATTCAGTACCAGAGAGAAGCAGAAAAGTGCAATGCTGCAACAGAAACATGTGAGGAAGCAAGAGAGCGTGCCGAGGCATTGCTCATCAAAGAGAGAAAGGTGACTTCCTTGTGGGAAAGACGAGCCCGTCAAGTGGGTTGGGAAGGGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1068

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

7.99

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1068 PF06364 7 - 170 6.8e-72 Protein of unknown function (DUF1068)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30996
fragaria_vesca FvH4_1g01280
malus_domestica MD02G1010700.v1.1 MD15G1155600.v1.1
prunus_persica Prupe.7G259500_v2.0.a1
pyrus_communis pycom02g00960 pycom15g13960
rosa_chinensis RchiOBHm_Chr2g0086111
rosa_laevigata RLG00000015744
rosa_multiflora Rmu_sc0004510.1_g000001
rosa_roxburghii Rroxscaffold_2G00154800
rosa_rugosa Rorug01G0465800
rosa_samantha Rh2BG015500 Rh2CG016400 Rh2DG017500
rosa_wichuraiana Rw2G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
AciI CCGC 3 cut(s) 50, 68, 222
AcoI YGGCCR 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 90, 499
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 100, 292
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 4 cut(s) 62, 143, 295, 305
AluI AGCT 4 cut(s) 62, 143, 295, 305
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 217
AoxI GGCC 3 cut(s) 77, 81, 198
ApeKI GCWGC 3 cut(s) 122, 295, 401
AspS9I GGNCC 3 cut(s) 77, 82, 271
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 109, 282, 388
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 238
BisI GCNGC 3 cut(s) 123, 296, 402
BlsI GCNGC 3 cut(s) 124, 297, 403
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 77, 82, 271
BmrFI CCNGG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 312, 438
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 499
Bse118I RCCGGY 1 cut(s) 79
Bse3DI GCAATG 2 cut(s) 403, 443
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 312, 438
BseLI CCNNNNNNNGG 2 cut(s) 90, 499
BseMI GCAATG 2 cut(s) 403, 443
BseMII CTCAG 3 cut(s) 222, 228, 339
BseRI GAGGAG 2 cut(s) 153, 156
BseXI GCAGC 3 cut(s) 109, 282, 388
BseYI CCCAGC 1 cut(s) 139
BshFI GGCC 3 cut(s) 79, 83, 200
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 90, 499
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 3 cut(s) 79, 83, 200
Bsp1286I GDGCHC 2 cut(s) 321, 493
Bsp143I GATC 2 cut(s) 11, 238
BspACI CCGC 3 cut(s) 50, 68, 222
BspANI GGCC 3 cut(s) 79, 83, 200
BspCNI CTCAG 3 cut(s) 221, 227, 340
BspMAI CTGCAG 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 403, 443
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 312, 438
BssMI GATC 2 cut(s) 11, 238
Bst2UI CCWGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 81, 145, 435
BstDEI CTNAG 3 cut(s) 208, 214, 348
BstDSI CCRYGG 1 cut(s) 312
BstKTI GATC 2 cut(s) 14, 241
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 11, 238
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 109, 282, 388
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 3 cut(s) 79, 83, 200
BtgI CCRYGG 1 cut(s) 312
Cac8I GCNNGC 3 cut(s) 81, 145, 435
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 77, 82, 271
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 2 cut(s) 331, 414
CviJI RGCY 9 cut(s) 62, 79, 83, 143, 200, 295, 305, 365, 491
CviKI_1 RGCY 9 cut(s) 62, 79, 83, 143, 200, 295, 305, 365, 491
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 3 cut(s) 208, 214, 348
DpnI GATC 2 cut(s) 13, 240
DpnII GATC 2 cut(s) 11, 238
DrdI GACNNNNNNGTC 1 cut(s) 492
DseDI GACNNNNNNGTC 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 2 cut(s) 334, 417
FaiI YATR 3 cut(s) 332, 415, 517
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 330, 413
Fnu4HI GCNGC 3 cut(s) 123, 296, 402
FriOI GRGCYC 1 cut(s) 493
FseI GGCCGGCC 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 123, 296, 402
FspBI CTAG 1 cut(s) 65
GluI GCNGC 3 cut(s) 123, 296, 402
GsaI CCCAGC 1 cut(s) 143
HaeIII GGCC 3 cut(s) 79, 83, 200
HapII CCGG 1 cut(s) 80
Hin1II CATG 2 cut(s) 334, 417
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 217, 243
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 97, 503
HpyCH4V TGCA 4 cut(s) 147, 298, 396, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 3 cut(s) 208, 214, 348
Hsp92II CATG 2 cut(s) 334, 417
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 11, 238
LmnI GCTCC 2 cut(s) 193, 316
Lsp1109I GCAGC 3 cut(s) 109, 282, 388
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 466
MalI GATC 2 cut(s) 13, 240
MboI GATC 2 cut(s) 11, 238
MboII GAAGA 2 cut(s) 123, 296
MfeI CAATTG 1 cut(s) 148
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 321, 493
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 200
MnlI CCTC 9 cut(s) 21, 87, 171, 174, 177, 284, 343, 412, 433
Mox20I TGGCCA 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 79
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 144
NaeI GCCGGC 1 cut(s) 81
NdeII GATC 2 cut(s) 11, 238
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 2 cut(s) 334, 417
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 1 cut(s) 417
PciI ACATGT 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 3 cut(s) 124, 297, 403
PscI ACATGT 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 190
PspPI GGNCC 3 cut(s) 77, 82, 271
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PstI CTGCAG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 238
RigI GGCCGGCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 123, 296, 402
Sau3AI GATC 2 cut(s) 11, 238
Sau96I GGNCC 3 cut(s) 77, 82, 271
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 2 cut(s) 321, 493
SetI ASST 8 cut(s) 32, 64, 98, 145, 276, 297, 307, 468
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 271
Sse9I AATT 1 cut(s) 148
SsiI CCGC 3 cut(s) 50, 68, 222
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 190
TasI AATT 1 cut(s) 148
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 122, 295, 401
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 271
XceI RCATGY 1 cut(s) 417
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.