AT4G31330

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015453
Physical Location & Seq
Forward (+)
15202288 .. 15203562
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31330.1

Sequence Viewer

Length: 720 bp
ATGGAATGGAGAGAATGTTATTTAGATGTGATATTGGTGCCGCTAGGGCTAATGGTGTATGCATCTTACCATGTTTACTTGTGGCATAAGTTACGAACACAGCCTCTCACCACTATCATCGGCACTAACGCTAGAGCTCGCCGATTCTGGGTCGCTTCCATCATCAAGGACAACGACAAGAAGAACATCTTGGCCGTTCAAACGCTTAGAAACTGCATAATGGGGTCGACTTTGATGGCAACAACATCGATCCTCCTCTGCGCTGGTCTAGCTGCGGTTTTAAGCAGCACATATGCAGTGAAGAAGCCTCTAAACGACGCTGTTTTTGGAGCTCGCGGAGAGTTCATGGTGGCTCTCAAGTACGTCACGATACTCACCATATTCCTCTTCTCCTTCTTCTCTCACTCTCTCTCAATTCGTTTCATCAACCAAGTTAACATCCTCATCAACACTCCTTTTCCTCCTGAGGAGTTGGAGGACGAGATGATGATGACCGCGGAGGAGTACGTGGCGGAGTTGCTAGAGAGAGGGTTTATTTTGAATACTGTGGGGAATCGGTTGTTCTACGCGGCTTTGCCGTTGATGCTTTGGATATTTGGACCGGTGCTTGTGTTTTTGTGCTCGGTCGTGATGGTTCCTCTACTTTACAACCTCGATTTCTTCTTCTTCGGTAAAGAAAGAAGAAAACTTGATCAAAAGTCTAGTTTTGGATCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

239

Amino Acids

27.28

Weight (kDa)

8.64

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 221 8.7e-76 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31330
fragaria_vesca FvH4_2g36420
malus_domestica MD08G1123900.v1.1 MD15G1102500.v1.1
prunus_persica Prupe.1G455600_v2.0.a1
pyrus_communis pycom08g10270
rosa_chinensis RchiOBHm_Chr6g0305481
rosa_laevigata RLG00000010888
rosa_multiflora Rmu_sc0007817.1_g000001
rosa_roxburghii Rroxscaffold_7G00162770
rosa_rugosa Rorug06G0340400
rosa_samantha Rh6AG452600 Rh6BG449200 Rh6CG466300 Rh6DG453000
rosa_wichuraiana Rw6G039440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccI GTMKAC 1 cut(s) 227
AccII CGCG 3 cut(s) 336, 497, 569
AciI CCGC 7 cut(s) 41, 275, 336, 495, 497, 512, 569
AclWI GGATC 2 cut(s) 244, 718
AcoI YGGCCR 1 cut(s) 192
AfaI GTAC 2 cut(s) 362, 506
AfiI CCNNNNNNNGG 1 cut(s) 148
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 2 cut(s) 200, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 137, 272, 332
AluI AGCT 3 cut(s) 137, 272, 332
Alw21I GWGCWC 3 cut(s) 139, 334, 623
AlwI GGATC 2 cut(s) 244, 718
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 272, 285
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AsiGI ACCGGT 1 cut(s) 601
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 100, 367
AvaII GGWCC 1 cut(s) 599
AxyI CCTNAGG 1 cut(s) 465
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 139, 334
Bbv12I GWGCWC 3 cut(s) 139, 334, 623
BbvI GCAGC 2 cut(s) 259, 297
BccI CCATC 3 cut(s) 167, 229, 625
BceAI ACGGC 2 cut(s) 179, 562
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BclI TGATCA 1 cut(s) 691
BfaI CTAG 5 cut(s) 44, 132, 269, 521, 702
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 41, 273, 286, 570
BlsI GCNGC 4 cut(s) 42, 274, 287, 571
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 2 cut(s) 39, 636
BmsI GCATC 2 cut(s) 71, 573
BpuEI CTTGAG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 508
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 601
Bse21I CCTNAGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 456
BseRI GAGGAG 3 cut(s) 245, 482, 515
BseXI GCAGC 2 cut(s) 259, 297
Bsh1236I CGCG 3 cut(s) 336, 497, 569
Bsh1285I CGRYCG 1 cut(s) 627
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 37
BshTI ACCGGT 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 627
BsiHKAI GWGCWC 3 cut(s) 139, 334, 623
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 139, 334, 623
Bsp143I GATC 3 cut(s) 249, 691, 710
BspACI CCGC 7 cut(s) 41, 275, 336, 495, 497, 512, 569
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 457
BspDI ATCGAT 1 cut(s) 248
BspFNI CGCG 3 cut(s) 336, 497, 569
BspLI GGNNCC 2 cut(s) 39, 636
BspPI GGATC 2 cut(s) 244, 718
BspT107I GGYRCC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 249, 691, 710
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 139, 334
BstDEI CTNAG 2 cut(s) 206, 465
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 1 cut(s) 438
BstFNI CGCG 3 cut(s) 336, 497, 569
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 3 cut(s) 252, 694, 713
BstMBI GATC 3 cut(s) 249, 691, 710
BstMCI CGRYCG 1 cut(s) 627
BstMWI GCNNNNNNNGC 3 cut(s) 46, 269, 583
BstUI CGCG 3 cut(s) 336, 497, 569
BstV1I GCAGC 2 cut(s) 259, 297
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
Bsu15I ATCGAT 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 139, 334
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 599
Cfr42I CCGCGG 1 cut(s) 498
ClaI ATCGAT 1 cut(s) 248
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 361, 505
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 2 cut(s) 71, 346
CviJI RGCY 9 cut(s) 49, 103, 137, 194, 272, 307, 332, 353, 572
CviKI_1 RGCY 9 cut(s) 49, 103, 137, 194, 272, 307, 332, 353, 572
CviQI GTAC 2 cut(s) 361, 505
DdeI CTNAG 2 cut(s) 206, 465
DpnI GATC 3 cut(s) 251, 693, 712
DpnII GATC 3 cut(s) 249, 691, 710
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 1 cut(s) 527
Ecl136II GAGCTC 2 cut(s) 137, 332
Eco24I GRGCYC 2 cut(s) 139, 334
Eco47I GGWCC 1 cut(s) 599
Eco53kI GAGCTC 2 cut(s) 137, 332
Eco81I CCTNAGG 1 cut(s) 465
EcoICRI GAGCTC 2 cut(s) 137, 332
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 139, 334
FaeI CATG 2 cut(s) 74, 349
FaiI YATR 8 cut(s) 60, 72, 87, 218, 292, 294, 347, 380
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 2 cut(s) 70, 345
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 41, 273, 286, 570
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 2 cut(s) 139, 334
Fsp4HI GCNGC 4 cut(s) 41, 273, 286, 570
FspBI CTAG 5 cut(s) 44, 132, 269, 521, 702
GlaI GCGC 1 cut(s) 262
GluI GCNGC 4 cut(s) 41, 273, 286, 570
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 602
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 74, 349
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 2 cut(s) 228, 436
HindII GTYRAC 2 cut(s) 228, 436
HinfI GANTC 2 cut(s) 144, 553
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 602
HphI GGTGA 2 cut(s) 100, 367
Hpy166II GTNNAC 3 cut(s) 76, 228, 436
Hpy188III TCNNGA 3 cut(s) 367, 464, 628
Hpy8I GTNNAC 3 cut(s) 76, 228, 436
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 363, 507
HpyCH4V TGCA 3 cut(s) 62, 216, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 269, 583
HpyF3I CTNAG 2 cut(s) 206, 465
HpySE526I ACGT 2 cut(s) 363, 507
Hsp92II CATG 2 cut(s) 74, 349
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 691
KspAI GTTAAC 1 cut(s) 436
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 3 cut(s) 249, 691, 710
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 4 cut(s) 133, 249, 477, 615
Lsp1109I GCAGC 2 cut(s) 259, 297
LweI GCATC 2 cut(s) 71, 573
MaeI CTAG 5 cut(s) 44, 132, 269, 521, 702
MaeII ACGT 2 cut(s) 363, 507
MaeIII GTNAC 2 cut(s) 90, 364
MalI GATC 3 cut(s) 251, 693, 712
MboI GATC 3 cut(s) 249, 691, 710
MboII GAAGA 8 cut(s) 193, 313, 379, 388, 652, 655, 658, 693
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 3 cut(s) 139, 334, 623
MluCI AATT 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 453
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 2 cut(s) 281, 435
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 602
MvnI CGCG 3 cut(s) 336, 497, 569
MwoI GCNNNNNNNGC 3 cut(s) 46, 269, 583
NdeI CATATG 1 cut(s) 292
NdeII GATC 3 cut(s) 249, 691, 710
NlaIII CATG 2 cut(s) 74, 349
NlaIV GGNNCC 2 cut(s) 39, 636
NmuCI GTSAC 1 cut(s) 364
NsiI ATGCAT 1 cut(s) 64
PfeI GAWTC 2 cut(s) 144, 553
PinAI ACCGGT 1 cut(s) 601
PkrI GCNGC 4 cut(s) 42, 274, 287, 571
Ppu21I YACGTR 1 cut(s) 508
Psp124BI GAGCTC 2 cut(s) 139, 334
PspN4I GGNNCC 2 cut(s) 39, 636
PspPI GGNCC 1 cut(s) 599
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 2 cut(s) 362, 506
RsaNI GTAC 2 cut(s) 361, 505
SacI GAGCTC 2 cut(s) 139, 334
SacII CCGCGG 1 cut(s) 498
SalI GTCGAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 281, 435
SatI GCNGC 4 cut(s) 41, 273, 286, 570
Sau3AI GATC 3 cut(s) 249, 691, 710
Sau96I GGNCC 1 cut(s) 599
SduI GDGCHC 3 cut(s) 139, 334, 623
SetI ASST 6 cut(s) 139, 274, 334, 366, 510, 654
SfaNI GCATC 2 cut(s) 71, 573
Sfr303I CCGCGG 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 414
SsiI CCGC 7 cut(s) 41, 275, 336, 495, 497, 512, 569
SspMI CTAG 5 cut(s) 44, 132, 269, 521, 702
SstI GAGCTC 2 cut(s) 139, 334
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 366, 510
TaqI TCGA 3 cut(s) 227, 248, 654
TaqII GACCGA 1 cut(s) 613
TasI AATT 1 cut(s) 414
TauI GCSGC 2 cut(s) 43, 572
TfiI GAWTC 2 cut(s) 144, 553
Tru1I TTAA 2 cut(s) 281, 435
Tru9I TTAA 2 cut(s) 281, 435
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 2 cut(s) 272, 285
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 334, 412
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 5 cut(s) 44, 132, 269, 521, 702
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.