Rmu_sc0007817.1_g000001

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007817.1
OG0015453
Physical Location & Seq
Reverse (-)
1095 .. 3064
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007817.1_g000001.1.cds

Sequence Viewer

Length: 708 bp
atggaatggagaaaatgctatttggatgtaattctggttcccctagggtttctgataacagctggttatcatggatggttgtggcacaatgttcgtaccaagcctgagactactatcatcggcataaacaccagaggaagaagattatgggtctctgcaatgatcaaggacaatgaaaagaagaacatcctggcagtccagacgcttcgaaacacgatcatgggatcaaccctaatggccaccacgtcgatccttctctgctccggcctggctgccgtgattagcagcacgtacagcgtgaagaaaccgctgaacgacgccgtctatggggctcatggggagttcatggtcgccctcaaatacgtgaccctgctcacccttttcctcttctccttcatgtgtcactcgctttccatcaggttcataaaccaggtgaacatcctcatcaacagccctcaggaccccacttctccagtgacccccgagtacgtgtcggagcttctagagaaaggttatattctgaacacggtgggcaacaggcttttctacgcagcactacctcttatgctttggatttttgggccggtgctggtgtttttgtgctccttaaccatggtgccaatgctttacaatttggactttgtgcttacaaggcctgatcagaaaggaaagaacatggatacttctggaaattcggacttcgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

235

Amino Acids

26.45

Weight (kDa)

9.03

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31330
fragaria_vesca FvH4_2g36420
malus_domestica MD08G1123900.v1.1 MD15G1102500.v1.1
prunus_persica Prupe.1G455600_v2.0.a1
pyrus_communis pycom08g10270
rosa_chinensis RchiOBHm_Chr6g0305481
rosa_laevigata RLG00000010888
rosa_multiflora Rmu_sc0007817.1_g000001
rosa_roxburghii Rroxscaffold_7G00162770
rosa_rugosa Rorug06G0340400
rosa_samantha Rh6AG452600 Rh6BG449200 Rh6CG466300 Rh6DG453000
rosa_wichuraiana Rw6G039440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 1 cut(s) 308
AclWI GGATC 2 cut(s) 232, 244
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 3 cut(s) 97, 293, 488
AfiI CCNNNNNNNGG 1 cut(s) 327
AflIII ACRYGT 1 cut(s) 489
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 3 cut(s) 189, 267, 429
AluBI AGCT 2 cut(s) 62, 499
AluI AGCT 2 cut(s) 62, 499
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 101, 157
AlwI GGATC 2 cut(s) 232, 244
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 4 cut(s) 237, 265, 581, 653
ApeKI GCWGC 3 cut(s) 272, 285, 551
ApoI RAATTY 1 cut(s) 691
AspA2I CCTAGG 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 460, 581
AsuHPI GGTGA 2 cut(s) 367, 445
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 456
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 3 cut(s) 259, 297, 563
BccI CCATC 2 cut(s) 69, 422
BceAI ACGGC 2 cut(s) 260, 305
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 3 cut(s) 191, 269, 431
BciVI GTATCC 1 cut(s) 673
BclI TGATCA 2 cut(s) 162, 658
BcoDI GTCTC 2 cut(s) 101, 157
BfaI CTAG 2 cut(s) 44, 503
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 3 cut(s) 273, 286, 552
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 3 cut(s) 274, 287, 553
Bme1390I CCNGG 3 cut(s) 191, 269, 431
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 482
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 460, 581
BmiI GGNNCC 3 cut(s) 39, 462, 618
BmrFI CCNGG 3 cut(s) 191, 269, 431
BpmI CTGGAG 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 208
BsaAI YACGTR 3 cut(s) 291, 364, 490
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 43, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 473
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 3 cut(s) 191, 269, 431
BseDI CCNNGG 2 cut(s) 43, 612
BseGI GGATG 4 cut(s) 31, 80, 186, 438
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 96, 470
BseNI ACTGG 1 cut(s) 473
BseXI GCAGC 3 cut(s) 259, 297, 563
BshFI GGCC 4 cut(s) 239, 267, 583, 655
BshNI GGYRCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 2 cut(s) 264, 584
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 101, 157
BsnI GGCC 4 cut(s) 239, 267, 583, 655
Bso31I GGTCTC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 334, 605
Bsp143I GATC 5 cut(s) 162, 216, 224, 249, 658
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 308
BspANI GGCC 4 cut(s) 239, 267, 583, 655
BspCNI CTCAG 2 cut(s) 97, 469
BspLI GGNNCC 3 cut(s) 39, 462, 618
BspPI GGATC 2 cut(s) 232, 244
BspT104I TTCGAA 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 2 cut(s) 43, 612
BssMI GATC 5 cut(s) 162, 216, 224, 249, 658
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 43, 612
Bst2UI CCWGG 3 cut(s) 191, 269, 431
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 318
BstBAI YACGTR 3 cut(s) 291, 364, 490
BstBI TTCGAA 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 105, 456
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 4 cut(s) 31, 80, 186, 438
BstKTI GATC 5 cut(s) 165, 219, 227, 252, 661
BstMAI GTCTC 2 cut(s) 101, 157
BstMBI GATC 5 cut(s) 162, 216, 224, 249, 658
BstMWI GCNNNNNNNGC 2 cut(s) 294, 652
BstNI CCWGG 3 cut(s) 191, 269, 431
BstSCI CCNGG 3 cut(s) 189, 267, 429
BstV1I GCAGC 3 cut(s) 259, 297, 563
Bsu36I CCTNAGG 1 cut(s) 456
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 4 cut(s) 239, 267, 583, 655
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 4 cut(s) 31, 80, 186, 438
BtsIMutI CAGTG 1 cut(s) 480
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 460, 581
CseI GACGC 2 cut(s) 211, 326
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 3 cut(s) 96, 292, 487
CviAII CATG 7 cut(s) 71, 220, 335, 346, 397, 613, 676
CviQI GTAC 3 cut(s) 96, 292, 487
DdeI CTNAG 2 cut(s) 105, 456
DpnI GATC 5 cut(s) 164, 218, 226, 251, 660
DpnII GATC 5 cut(s) 162, 216, 224, 249, 658
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 43, 612
Eco147I AGGCCT 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 460
Eco81I CCTNAGG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 3 cut(s) 189, 267, 429
EcoT14I CCWWGG 2 cut(s) 43, 612
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 2 cut(s) 43, 612
FaeI CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
FatI CATG 7 cut(s) 70, 219, 334, 345, 396, 612, 675
FbaI TGATCA 2 cut(s) 162, 658
Fnu4HI GCNGC 3 cut(s) 273, 286, 552
FokI GGATG 4 cut(s) 38, 87, 173, 425
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 273, 286, 552
FspBI CTAG 2 cut(s) 44, 503
GluI GCNGC 3 cut(s) 273, 286, 552
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 4 cut(s) 239, 267, 583, 655
HapII CCGG 2 cut(s) 264, 584
HgaI GACGC 2 cut(s) 211, 326
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
HpaII CCGG 2 cut(s) 264, 584
HphI GGTGA 2 cut(s) 367, 445
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 54, 496, 522, 663, 697
Hpy188III TCNNGA 4 cut(s) 199, 458, 503, 687
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 2 cut(s) 250, 320
HpyAV CCTTC 2 cut(s) 263, 403
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 4 cut(s) 245, 290, 363, 489
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 652
HpyF3I CTNAG 2 cut(s) 105, 456
HpySE526I ACGT 4 cut(s) 245, 290, 363, 489
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
Ksp22I TGATCA 2 cut(s) 162, 658
Kzo9I GATC 5 cut(s) 162, 216, 224, 249, 658
LmnI GCTCC 3 cut(s) 266, 496, 608
Lsp1109I GCAGC 3 cut(s) 259, 297, 563
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 2 cut(s) 44, 503
MaeII ACGT 4 cut(s) 245, 290, 363, 489
MaeIII GTNAC 3 cut(s) 364, 401, 475
MalI GATC 5 cut(s) 164, 218, 226, 251, 660
MboI GATC 5 cut(s) 162, 216, 224, 249, 658
MboII GAAGA 5 cut(s) 150, 153, 193, 313, 379
MhlI GDGCHC 2 cut(s) 334, 605
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 3 cut(s) 30, 631, 691
MluNI TGGCCA 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 6 cut(s) 128, 365, 395, 452, 465, 570
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 62, 310
MspI CCGG 2 cut(s) 264, 584
MspR9I CCNGG 3 cut(s) 191, 269, 431
MvaI CCWGG 3 cut(s) 191, 269, 431
MwoI GCNNNNNNNGC 2 cut(s) 294, 652
NcoI CCATGG 1 cut(s) 612
NdeII GATC 5 cut(s) 162, 216, 224, 249, 658
NlaIII CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
NlaIV GGNNCC 3 cut(s) 39, 462, 618
NmuCI GTSAC 3 cut(s) 364, 401, 475
NspV TTCGAA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 655
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 274, 287, 553
Ppu21I YACGTR 3 cut(s) 291, 364, 490
PpuMI RGGWCCY 1 cut(s) 460
Psp5II RGGWCCY 1 cut(s) 460
Psp6I CCWGG 3 cut(s) 189, 267, 429
PspGI CCWGG 3 cut(s) 189, 267, 429
PspN4I GGNNCC 3 cut(s) 39, 462, 618
PspPI GGNCC 2 cut(s) 460, 581
PspPPI RGGWCCY 1 cut(s) 460
PsrI GAACNNNNNNTAC 2 cut(s) 21, 53
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 97, 293, 488
RsaNI GTAC 3 cut(s) 96, 292, 487
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 3 cut(s) 273, 286, 552
Sau3AI GATC 5 cut(s) 162, 216, 224, 249, 658
Sau96I GGNCC 2 cut(s) 460, 581
ScrFI CCNGG 3 cut(s) 191, 269, 431
SduI GDGCHC 2 cut(s) 334, 605
SexAI ACCWGGT 1 cut(s) 429
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 3 cut(s) 30, 631, 691
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 1 cut(s) 308
SspMI CTAG 2 cut(s) 44, 503
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 3 cut(s) 189, 267, 429
StyI CCWWGG 2 cut(s) 43, 612
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 4 cut(s) 248, 293, 366, 492
TaqI TCGA 2 cut(s) 208, 248
TasI AATT 3 cut(s) 30, 631, 691
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 3 cut(s) 364, 401, 475
TseI GCWGC 3 cut(s) 272, 285, 551
Tsp45I GTSAC 3 cut(s) 364, 401, 475
TspDTI ATGAA 4 cut(s) 189, 334, 385, 412
TspRI CASTG 1 cut(s) 480
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 1 cut(s) 691
XbaI TCTAGA 1 cut(s) 502
XmaJI CCTAGG 1 cut(s) 43
XspI CTAG 2 cut(s) 44, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.