Rroxscaffold_7G00162770

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015453
Physical Location & Seq
Reverse (-)
5156357 .. 5158695
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162770.1

Sequence Viewer

Length: 708 bp
ATGGAATGGAGAAAATGCTATTTGGATGTGATTCTGGTTCCCCTAGGGTTTCTGATAACAGCTGGTTATCATGGATGGTTGTGGCACAATGTTCGTACCAAGCCTGAGACTACTATCATCGGCATAAACACCAGAGGAAGAAGATTATGGGTCTCTGCAATGATCAAGGACAATGAAAAGAAGAACATCCTGGCAGTCCAGACGCTTCGAAACACGATCATGGGATCAACCCTAATGGCCACCACATCGATCCTTCTCTGCTCCGGCCTGGCGGCCGTGATTAGCAGCACGTACAGCGTGAAGAAGCCGCTGAACGACGCCGTCTATGGGGCTCATGGGGAGTTCATGGTCGCCCTCAAATACGTGACCCTACTCACCCTTTTCCTCTTCTCCTTCATGTGTCACTCGCTTTCCATCAGGTTCATAAACCAAGTGAACATCCTCATCAACAGCCCTCAGGACCCCACTTCTCCAGTGACCCCCGAGTACGTGTCGGAGCTTCTAGAGAAAGGTTACATTCTGAACACGGTGGGGAACAGGCTTTTCTACGCAGCACTACCTCTTATGCTTTGGATTTTTGGGCCGGTGCTGGTGTTTTTGTGCTCCATAACGATGGTGCCAATGCTTTACAATTTGGACTTTGTGCTTACAAGGCCTGATCAGAAAGGAAAGAACATGGATGCTTCCGGAAATTCGGACTCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

235

Amino Acids

26.36

Weight (kDa)

9.03

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 215 6.8e-77 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31330
fragaria_vesca FvH4_2g36420
malus_domestica MD08G1123900.v1.1 MD15G1102500.v1.1
prunus_persica Prupe.1G455600_v2.0.a1
pyrus_communis pycom08g10270
rosa_chinensis RchiOBHm_Chr6g0305481
rosa_laevigata RLG00000010888
rosa_multiflora Rmu_sc0007817.1_g000001
rosa_roxburghii Rroxscaffold_7G00162770
rosa_rugosa Rorug06G0340400
rosa_samantha Rh6AG452600 Rh6BG449200 Rh6CG466300 Rh6DG453000
rosa_wichuraiana Rw6G039440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AccIII TCCGGA 1 cut(s) 686
AciI CCGC 2 cut(s) 272, 308
AclWI GGATC 2 cut(s) 232, 244
AcoI YGGCCR 2 cut(s) 237, 273
AcsI RAATTY 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 3 cut(s) 97, 293, 488
AfiI CCNNNNNNNGG 1 cut(s) 327
AflIII ACRYGT 1 cut(s) 489
AjnI CCWGG 2 cut(s) 189, 267
AluBI AGCT 2 cut(s) 62, 499
AluI AGCT 2 cut(s) 62, 499
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 101, 157
AlwI GGATC 2 cut(s) 232, 244
Ama87I CYCGRG 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 686
AoxI GGCC 5 cut(s) 237, 265, 273, 581, 653
ApeKI GCWGC 2 cut(s) 285, 551
ApoI RAATTY 1 cut(s) 691
AspA2I CCTAGG 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 460, 581
AsuHPI GGTGA 1 cut(s) 367
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 456
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 297, 563
BccI CCATC 3 cut(s) 69, 422, 607
BceAI ACGGC 2 cut(s) 260, 305
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 2 cut(s) 191, 269
BclI TGATCA 2 cut(s) 162, 658
BcoDI GTCTC 2 cut(s) 101, 157
BfaI CTAG 2 cut(s) 44, 503
BisI GCNGC 4 cut(s) 273, 286, 308, 552
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 4 cut(s) 274, 287, 309, 553
Bme1390I CCNGG 2 cut(s) 191, 269
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 460, 581
BmiI GGNNCC 3 cut(s) 39, 462, 618
BmrFI CCNGG 2 cut(s) 191, 269
BmsI GCATC 1 cut(s) 670
BpmI CTGGAG 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 248
BsaAI YACGTR 3 cut(s) 291, 364, 490
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 473
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 686
BseBI CCWGG 2 cut(s) 191, 269
BseCI ATCGAT 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 5 cut(s) 31, 80, 186, 438, 685
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 96, 470
BseNI ACTGG 1 cut(s) 473
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 297, 563
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 239, 267, 275, 583, 655
BshNI GGYRCC 1 cut(s) 616
BshVI ATCGAT 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 3 cut(s) 264, 584, 687
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 101, 157
BsnI GGCC 5 cut(s) 239, 267, 275, 583, 655
Bso31I GGTCTC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 334, 605
Bsp13I TCCGGA 1 cut(s) 686
Bsp143I GATC 5 cut(s) 162, 216, 224, 249, 658
BspACI CCGC 2 cut(s) 272, 308
BspANI GGCC 5 cut(s) 239, 267, 275, 583, 655
BspCNI CTCAG 2 cut(s) 97, 469
BspDI ATCGAT 1 cut(s) 248
BspEI TCCGGA 1 cut(s) 686
BspLI GGNNCC 3 cut(s) 39, 462, 618
BspPI GGATC 2 cut(s) 232, 244
BspT104I TTCGAA 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 5 cut(s) 162, 216, 224, 249, 658
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 191, 269
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 318
BstBAI YACGTR 3 cut(s) 291, 364, 490
BstBI TTCGAA 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 105, 456
BstF5I GGATG 5 cut(s) 31, 80, 186, 438, 685
BstKTI GATC 5 cut(s) 165, 219, 227, 252, 661
BstMAI GTCTC 2 cut(s) 101, 157
BstMBI GATC 5 cut(s) 162, 216, 224, 249, 658
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 294, 652
BstNI CCWGG 2 cut(s) 191, 269
BstSCI CCNGG 2 cut(s) 189, 267
BstV1I GCAGC 2 cut(s) 297, 563
BstXI CCANNNNNNTGG 1 cut(s) 613
BstZI CGGCCG 1 cut(s) 273
Bsu15I ATCGAT 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 5 cut(s) 239, 267, 275, 583, 655
BsuTUI ATCGAT 1 cut(s) 248
BtsCI GGATG 5 cut(s) 31, 80, 186, 438, 685
BtsIMutI CAGTG 1 cut(s) 480
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 460, 581
ClaI ATCGAT 1 cut(s) 248
CseI GACGC 2 cut(s) 211, 326
Csp6I GTAC 3 cut(s) 96, 292, 487
CviAII CATG 6 cut(s) 71, 220, 335, 346, 397, 676
CviQI GTAC 3 cut(s) 96, 292, 487
DdeI CTNAG 2 cut(s) 105, 456
DpnI GATC 5 cut(s) 164, 218, 226, 251, 660
DpnII GATC 5 cut(s) 162, 216, 224, 249, 658
EaeI YGGCCR 2 cut(s) 237, 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 460
Eco52I CGGCCG 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 189, 267
EcoT14I CCWWGG 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 6 cut(s) 74, 223, 338, 349, 400, 679
FatI CATG 6 cut(s) 70, 219, 334, 345, 396, 675
FbaI TGATCA 2 cut(s) 162, 658
Fnu4HI GCNGC 4 cut(s) 273, 286, 308, 552
FokI GGATG 5 cut(s) 38, 87, 173, 425, 692
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 4 cut(s) 273, 286, 308, 552
FspBI CTAG 2 cut(s) 44, 503
GluI GCNGC 4 cut(s) 273, 286, 308, 552
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 5 cut(s) 239, 267, 275, 583, 655
HapII CCGG 3 cut(s) 264, 584, 687
HgaI GACGC 2 cut(s) 211, 326
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 6 cut(s) 74, 223, 338, 349, 400, 679
HinfI GANTC 2 cut(s) 31, 698
HpaII CCGG 3 cut(s) 264, 584, 687
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 54, 496, 522, 663, 697
Hpy188III TCNNGA 4 cut(s) 199, 458, 503, 687
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 263, 403
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 3 cut(s) 290, 363, 489
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 652
HpyF3I CTNAG 2 cut(s) 105, 456
HpySE526I ACGT 3 cut(s) 290, 363, 489
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 6 cut(s) 74, 223, 338, 349, 400, 679
Kpn2I TCCGGA 1 cut(s) 686
Ksp22I TGATCA 2 cut(s) 162, 658
Kzo9I GATC 5 cut(s) 162, 216, 224, 249, 658
LmnI GCTCC 3 cut(s) 266, 496, 608
Lsp1109I GCAGC 2 cut(s) 297, 563
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 44, 503
MaeII ACGT 3 cut(s) 290, 363, 489
MaeIII GTNAC 4 cut(s) 364, 401, 475, 512
MalI GATC 5 cut(s) 164, 218, 226, 251, 660
MboI GATC 5 cut(s) 162, 216, 224, 249, 658
MboII GAAGA 5 cut(s) 150, 153, 193, 313, 379
MhlI GDGCHC 2 cut(s) 334, 605
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 2 cut(s) 631, 691
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 6 cut(s) 128, 365, 395, 452, 465, 570
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 686
MscI TGGCCA 1 cut(s) 239
MslI CAYNNNNRTG 2 cut(s) 218, 611
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 62, 310
MspI CCGG 3 cut(s) 264, 584, 687
MspR9I CCNGG 2 cut(s) 191, 269
MvaI CCWGG 2 cut(s) 191, 269
MwoI GCNNNNNNNGC 2 cut(s) 294, 652
NdeII GATC 5 cut(s) 162, 216, 224, 249, 658
NlaIII CATG 6 cut(s) 74, 223, 338, 349, 400, 679
NlaIV GGNNCC 3 cut(s) 39, 462, 618
NmuCI GTSAC 3 cut(s) 364, 401, 475
NspV TTCGAA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 655
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 4 cut(s) 274, 287, 309, 553
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Ppu21I YACGTR 3 cut(s) 291, 364, 490
PpuMI RGGWCCY 1 cut(s) 460
Psp5II RGGWCCY 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 189, 267
PspGI CCWGG 2 cut(s) 189, 267
PspN4I GGNNCC 3 cut(s) 39, 462, 618
PspPI GGNCC 2 cut(s) 460, 581
PspPPI RGGWCCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 97, 293, 488
RsaNI GTAC 3 cut(s) 96, 292, 487
RseI CAYNNNNRTG 2 cut(s) 218, 611
SatI GCNGC 4 cut(s) 273, 286, 308, 552
Sau3AI GATC 5 cut(s) 162, 216, 224, 249, 658
Sau96I GGNCC 2 cut(s) 460, 581
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 2 cut(s) 191, 269
SduI GDGCHC 2 cut(s) 334, 605
SetI ASST 8 cut(s) 64, 293, 366, 422, 492, 501, 514, 562
SfaNI GCATC 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 2 cut(s) 218, 611
Sse9I AATT 2 cut(s) 631, 691
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 2 cut(s) 272, 308
SspMI CTAG 2 cut(s) 44, 503
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 2 cut(s) 189, 267
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 3 cut(s) 293, 366, 492
TaqI TCGA 2 cut(s) 208, 248
TasI AATT 2 cut(s) 631, 691
TauI GCSGC 2 cut(s) 275, 310
TfiI GAWTC 1 cut(s) 31
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 3 cut(s) 364, 401, 475
TseI GCWGC 2 cut(s) 285, 551
Tsp45I GTSAC 3 cut(s) 364, 401, 475
TspDTI ATGAA 4 cut(s) 189, 334, 385, 412
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 1 cut(s) 480
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 1 cut(s) 691
XbaI TCTAGA 1 cut(s) 502
XmaJI CCTAGG 1 cut(s) 43
XspI CTAG 2 cut(s) 44, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.