AT4G31380

flp1 flp1 (fpf1-like protein 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013941
Physical Location & Seq
Forward (+)
15230008 .. 15230382
375 bp
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UTR
Exon/CDS
Intron
AT4G31380.1

Sequence Viewer

Length: 375 bp
ATGTCTGGTGTGTGGGTATTCAACAAAAACGGAGTCATGAGGCTGGTGGAGAATCCTTACAACCAATCCGCCGGAGATTCGTCGGAATCGTCCTCTTCCGGTGGTAACCAGCAGCAGAGGATGAGGAGGAAAATTCTCGTCCATCTTCCAAGCAGCGAGGTTGTGTCTTCGTACGGATCACTTGAGAAGATCTTGAAGAATCTTGGGTGGGAGAGGTACTACAGTGGAGACAATACCGATCATCTGCTCCAGTTCCACAAGAGAACTTCGATCGATCTCATCTCTCTCCCTCGTGACTTCTCCAAGTTTAACTCTATTCACATGTATGATATCGTCGTCAAGAACCCTAACGTCTTCCATGTCCGTGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.25

Weight (kDa)

9.3

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 2 cut(s) 173, 218
AflIII ACRYGT 2 cut(s) 321, 369
AgsI TTSAA 2 cut(s) 22, 196
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 112, 153
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
BaeI ACNNNNGTAYC 2 cut(s) 208, 241
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 2 cut(s) 159, 346
BbvI GCAGC 2 cut(s) 124, 165
BccI CCATC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 220
BglII AGATCT 1 cut(s) 189
BisI GCNGC 2 cut(s) 113, 154
BlsI GCNGC 2 cut(s) 114, 155
BpiI GAAGAC 2 cut(s) 159, 346
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 250
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 124, 165
Bsh1285I CGRYCG 1 cut(s) 273
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 72, 99
BsiWI CGTACG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 222
Bsp143I GATC 5 cut(s) 176, 189, 238, 270, 274
BspACI CCGC 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 273
BspHI TCATGA 1 cut(s) 36
BspPI GGATC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 250
BssMI GATC 5 cut(s) 176, 189, 238, 270, 274
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 100
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 5 cut(s) 179, 192, 241, 273, 277
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 5 cut(s) 176, 189, 238, 270, 274
BstMCI CGRYCG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 325, 373
BstPI GGTNACC 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 124, 165
BstV2I GAAGAC 2 cut(s) 159, 346
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 229
CciI TCATGA 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 172, 217
CviAII CATG 4 cut(s) 37, 322, 359, 370
CviJI RGCY 1 cut(s) 43
CviKI_1 RGCY 1 cut(s) 43
CviQI GTAC 2 cut(s) 172, 217
DpnI GATC 5 cut(s) 178, 191, 240, 272, 276
DpnII GATC 5 cut(s) 176, 189, 238, 270, 274
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 58
Eco32I GATATC 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 331
FaeI CATG 4 cut(s) 40, 325, 362, 373
FaiI YATR 5 cut(s) 38, 323, 327, 360, 371
FatI CATG 4 cut(s) 36, 321, 358, 369
Fnu4HI GCNGC 2 cut(s) 113, 154
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 113, 154
GluI GCNGC 2 cut(s) 113, 154
GsuI CTGGAG 1 cut(s) 233
HapII CCGG 2 cut(s) 72, 99
Hin1II CATG 4 cut(s) 40, 325, 362, 373
HinfI GANTC 5 cut(s) 33, 52, 77, 86, 199
HpaII CCGG 2 cut(s) 72, 99
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 4 cut(s) 37, 193, 293, 340
Hpy99I CGWCG 2 cut(s) 85, 338
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 4 cut(s) 40, 325, 362, 373
Kzo9I GATC 5 cut(s) 176, 189, 238, 270, 274
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 5 cut(s) 29, 85, 112, 122, 263
Lsp1109I GCAGC 2 cut(s) 124, 165
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 104, 293, 365
MalI GATC 5 cut(s) 178, 191, 240, 272, 276
MboI GATC 5 cut(s) 176, 189, 238, 270, 274
MboII GAAGA 6 cut(s) 87, 137, 159, 199, 208, 346
MflI RGATCY 1 cut(s) 189
MluCI AATT 1 cut(s) 132
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 8 cut(s) 33, 103, 111, 117, 120, 151, 207, 300
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 324, 363
MspI CCGG 2 cut(s) 72, 99
NdeII GATC 5 cut(s) 176, 189, 238, 270, 274
NlaIII CATG 4 cut(s) 40, 325, 362, 373
NmuCI GTSAC 2 cut(s) 293, 365
NspI RCATGY 2 cut(s) 325, 373
PagI TCATGA 1 cut(s) 36
PciI ACATGT 2 cut(s) 321, 369
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 4 cut(s) 52, 77, 86, 199
Pfl23II CGTACG 1 cut(s) 171
PkrI GCNGC 2 cut(s) 114, 155
Ple19I CGATCG 1 cut(s) 273
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PscI ACATGT 2 cut(s) 321, 369
PspEI GGTNACC 1 cut(s) 104
PspLI CGTACG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 189
PvuI CGATCG 1 cut(s) 273
RsaI GTAC 2 cut(s) 173, 218
RsaNI GTAC 2 cut(s) 172, 217
RseI CAYNNNNRTG 2 cut(s) 324, 363
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 113, 154
Sau3AI GATC 5 cut(s) 176, 189, 238, 270, 274
SchI GAGTC 1 cut(s) 42
SetI ASST 3 cut(s) 162, 218, 354
SfcI CTRYAG 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 324, 363
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 69
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 269, 273
TasI AATT 1 cut(s) 132
TfiI GAWTC 4 cut(s) 52, 77, 86, 199
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 293, 365
TseI GCWGC 2 cut(s) 112, 153
Tsp45I GTSAC 2 cut(s) 293, 365
TspGWI ACGGA 3 cut(s) 45, 189, 353
TspRI CASTG 1 cut(s) 229
XapI RAATTY 1 cut(s) 132
XceI RCATGY 2 cut(s) 325, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.