MD13G1169600.v1.1

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013941
Physical Location & Seq
Reverse (-)
13721891 .. 13722214
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1169600.v1.1.491

Sequence Viewer

Length: 324 bp
ATGTCTGGGGTTTGGGTTTTCAAGAATGGCGTCGTCCGGTTGGTGGACGGGGCGGATTCCTTGCAAGGCTCCAACTCTCGGCCGCGCAAGGTGCTTGTCCACACTCCAACTGACGAGGTCATCAGCTCTTATGCCGTGCTCGAACGCAAGCTGTACTCACTCGGTTGGGAGAGATACTATGACGATCCAGACCTTCTTCAGTTCCACAAACGATCCACCGTCCATCTCATCTCTCTCCCCAAGGATTTCAACAAGTTCAAGTCCATGCACATGTATGACATCGTTGTTAAAAATCGCAATGTGTTTGAAGTGAGGGATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

9.26

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 85
AciI CCGC 2 cut(s) 53, 83
AclWI GGATC 2 cut(s) 179, 207
AcoI YGGCCR 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 43, 78
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 4 cut(s) 22, 250, 259, 308
AluBI AGCT 2 cut(s) 126, 151
AluI AGCT 2 cut(s) 126, 151
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 2 cut(s) 179, 207
AoxI GGCC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 119
BciVI GTATCC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 78
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 43, 78
BseMI GCAATG 1 cut(s) 304
BseX3I CGGCCG 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 43, 78
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 184, 212
BspACI CCGC 2 cut(s) 53, 83
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 179, 207
BsrDI GCAATG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 184, 212
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 149
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 187, 215
BstMBI GATC 2 cut(s) 184, 212
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 274
BstSNI TACGTA 1 cut(s) 321
BstUI CGCG 1 cut(s) 85
BstZI CGGCCG 1 cut(s) 80
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 87
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 265, 271
CviJI RGCY 4 cut(s) 69, 82, 126, 151
CviKI_1 RGCY 4 cut(s) 69, 82, 126, 151
CviQI GTAC 1 cut(s) 154
DpnI GATC 2 cut(s) 186, 214
DpnII GATC 2 cut(s) 184, 212
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 80
Eco105I TACGTA 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 240
Eco52I CGGCCG 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 268, 274
FaiI YATR 5 cut(s) 132, 180, 266, 272, 276
FatI CATG 2 cut(s) 264, 270
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 268, 274
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 46, 100
Hpy188III TCNNGA 2 cut(s) 22, 188
Hpy8I GTNNAC 2 cut(s) 46, 100
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 64, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 268, 274
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 184, 212
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 2 cut(s) 50, 201
MaeII ACGT 1 cut(s) 320
MalI GATC 2 cut(s) 186, 214
MboI GATC 2 cut(s) 184, 212
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 141
MmeI TCCRAC 2 cut(s) 96, 131
MnlI CCTC 2 cut(s) 109, 306
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 2 cut(s) 269, 273
MspI CCGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 2 cut(s) 184, 212
NlaIII CATG 2 cut(s) 268, 274
NlaIV GGNNCC 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 58
NspI RCATGY 1 cut(s) 274
PciI ACATGT 1 cut(s) 270
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 321
PscI ACATGT 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 2 cut(s) 269, 273
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 184, 212
SduI GDGCHC 1 cut(s) 141
SetI ASST 6 cut(s) 93, 120, 128, 153, 195, 323
SmiMI CAYNNNNRTG 2 cut(s) 269, 273
SnaBI TACGTA 1 cut(s) 321
SsiI CCGC 2 cut(s) 53, 83
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 141
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 116
XceI RCATGY 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.