MD16G1169700.v1.1

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013941
Physical Location & Seq
Reverse (-)
14097012 .. 14097627
616 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1169700.v1.1.491

Sequence Viewer

Length: 276 bp
ATGTCTGGGGTTTGGGTTTTCAATAATGGCGTCGTCCGGTTGGTGGACGGGGCGAATTCCTTGCAAGGCTCCAACGCCCGGGCGCGTAAGGTGCTCGTCCACACTCCAACTGACGAGGTCATCAGTTCTTACGCCGTGCTCGAATGCAAGCTGTCCACGCTCGGTTGGGAGCGATACTACGACGATCCGGACCTTCTTCAGTTCCACAAACGATCCACCGTCCATCTCATCTCTCTCCCCAAGGATTTCAGCAAGTTCAAGTCCATGCACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.32

Weight (kDa)

8.85

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 187
AclWI GGATC 2 cut(s) 179, 207
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 43, 78
AgsI TTSAA 2 cut(s) 22, 259
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 2 cut(s) 96, 141
AlwI GGATC 2 cut(s) 179, 207
Ama87I CYCGRG 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 187
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 2 cut(s) 79, 80
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 190
Bbv12I GWGCWC 2 cut(s) 96, 141
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BcnI CCSGG 2 cut(s) 79, 80
Bme1390I CCNGG 2 cut(s) 79, 80
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 79, 80
BpuMI CCSGG 2 cut(s) 79, 80
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 78, 240
BsaWI WCCGGW 2 cut(s) 36, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 78
BseAI TCCGGA 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 78, 240
BseLI CCNNNNNNNGG 2 cut(s) 43, 78
Bsh1236I CGCG 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 96, 141
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 3 cut(s) 37, 79, 188
BslI CCNNNNNNNGG 2 cut(s) 43, 78
BsmI GAATGC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 96, 141
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 184, 212
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 179, 207
BssECI CCNNGG 2 cut(s) 78, 240
BssMI GATC 2 cut(s) 184, 212
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 149
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 187, 215
BstMBI GATC 2 cut(s) 184, 212
BstMWI GCNNNNNNNGC 2 cut(s) 91, 157
BstSCI CCNGG 2 cut(s) 77, 78
BstUI CGCG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 190
Cfr9I CCCGGG 1 cut(s) 78
CseI GACGC 1 cut(s) 19
CviAII CATG 1 cut(s) 265
CviJI RGCY 2 cut(s) 69, 151
CviKI_1 RGCY 2 cut(s) 69, 151
DpnI GATC 2 cut(s) 186, 214
DpnII GATC 2 cut(s) 184, 212
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 268
FaiI YATR 3 cut(s) 266, 272, 274
FatI CATG 1 cut(s) 264
FauNDI CATATG 1 cut(s) 272
GlaI GCGC 1 cut(s) 84
HapII CCGG 3 cut(s) 37, 79, 188
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HpaII CCGG 3 cut(s) 37, 79, 188
Hpy166II GTNNAC 3 cut(s) 46, 100, 156
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 3 cut(s) 46, 100, 156
Hpy99I CGWCG 2 cut(s) 35, 185
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 64, 147, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 157
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 184, 212
LmnI GCTCC 2 cut(s) 74, 169
LpnPI CCDG 3 cut(s) 50, 92, 201
MalI GATC 2 cut(s) 186, 214
MboI GATC 2 cut(s) 184, 212
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 96, 141
MluCI AATT 1 cut(s) 55
MmeI TCCRAC 2 cut(s) 96, 131
MnlI CCTC 1 cut(s) 109
MroI TCCGGA 1 cut(s) 187
MspI CCGG 3 cut(s) 37, 79, 188
MspR9I CCNGG 2 cut(s) 79, 80
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 91, 157
NciI CCSGG 2 cut(s) 79, 80
NdeI CATATG 1 cut(s) 272
NdeII GATC 2 cut(s) 184, 212
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 116
Sau3AI GATC 2 cut(s) 184, 212
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 79, 80
SduI GDGCHC 2 cut(s) 96, 141
SetI ASST 4 cut(s) 93, 120, 153, 195
SinI GGWCC 1 cut(s) 190
SmaI CCCGGG 1 cut(s) 80
SrfI GCCCGGGC 1 cut(s) 80
Sse9I AATT 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 77, 78
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 55
TspMI CCCGGG 1 cut(s) 78
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 55
XmaI CCCGGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.