Prupe.1G137800_v2.0.a1

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013941
Physical Location & Seq
Reverse (-)
10785386 .. 10785745
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G137800.1

Sequence Viewer

Length: 321 bp
ATGTCTGGGGTTTGGGTTTTCAAGAACGGTGTCGTTCGACTCGTGGACGGGGCGGATTCCATGCAGGGCTCCAACGCCAGGCGCAAGGTGCTGGTCCACACCCCAAGTGAGGAAGTGATCAGCTCCTACGCCGTGCTCGAGCGCAAGCTGTTGTCGCTGGGTTGGGAGAGGTACTACGACGACCCAGACCTTCTCCAGTTCCACAAAAGATCCACCGTCCATCTCATCTCTCTCCCCAAGGATTTCAGCAAGTTCAAGTCCATGCACATGTACGACATCGTTGTTAAAAACCGCAATGTGTTTGAAGTGAGGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.35

Weight (kDa)

9.3

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 292
AclWI GGATC 1 cut(s) 204
AfaI GTAC 2 cut(s) 173, 272
AfiI CCNNNNNNNGG 2 cut(s) 78, 109
AflIII ACRYGT 2 cut(s) 267, 315
AgsI TTSAA 3 cut(s) 22, 256, 305
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 2 cut(s) 123, 148
AluI AGCT 2 cut(s) 123, 148
Alw21I GWGCWC 1 cut(s) 138
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 137
AspLEI GCGC 2 cut(s) 84, 144
AspS9I GGNCC 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 109
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 78, 109
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 78, 109
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 71, 138
Bsp143I GATC 2 cut(s) 117, 209
BspACI CCGC 2 cut(s) 53, 292
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 117, 209
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 29, 217
BstC8I GCNNGC 1 cut(s) 146
BstHHI GCGC 2 cut(s) 84, 144
BstKTI GATC 2 cut(s) 120, 212
BstMBI GATC 2 cut(s) 117, 209
BstMWI GCNNNNNNNGC 2 cut(s) 88, 154
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 2 cut(s) 271, 319
BstSCI CCNGG 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 2 cut(s) 84, 144
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 172, 271
CviAII CATG 4 cut(s) 61, 262, 268, 316
CviJI RGCY 3 cut(s) 69, 123, 148
CviKI_1 RGCY 3 cut(s) 69, 123, 148
CviQI GTAC 2 cut(s) 172, 271
DpnI GATC 2 cut(s) 119, 211
DpnII GATC 2 cut(s) 117, 209
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 4 cut(s) 64, 265, 271, 319
FaiI YATR 4 cut(s) 62, 263, 269, 317
FatI CATG 4 cut(s) 60, 261, 267, 315
FbaI TGATCA 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 71
GlaI GCGC 2 cut(s) 83, 143
GsaI CCCAGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 179
HhaI GCGC 2 cut(s) 84, 144
Hin1II CATG 4 cut(s) 64, 265, 271, 319
Hin6I GCGC 2 cut(s) 82, 142
HinP1I GCGC 2 cut(s) 82, 142
HinfI GANTC 2 cut(s) 39, 56
Hpy166II GTNNAC 2 cut(s) 46, 97
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 2 cut(s) 46, 97
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 29, 217
HpyCH4V TGCA 2 cut(s) 64, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 154
Hsp92II CATG 4 cut(s) 64, 265, 271, 319
HspAI GCGC 2 cut(s) 82, 142
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 117, 209
LmnI GCTCC 2 cut(s) 74, 128
LpnPI CCDG 7 cut(s) 50, 64, 77, 91, 143, 198, 209
MalI GATC 2 cut(s) 119, 211
MboI GATC 2 cut(s) 117, 209
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 71, 138
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 103, 162, 303
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 88, 154
NdeII GATC 2 cut(s) 117, 209
NlaIII CATG 4 cut(s) 64, 265, 271, 319
NlaIV GGNNCC 1 cut(s) 70
NspI RCATGY 2 cut(s) 271, 319
PaeR7I CTCGAG 1 cut(s) 137
PciI ACATGT 2 cut(s) 267, 315
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 135
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PscI ACATGT 2 cut(s) 267, 315
Psp6I CCWGG 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 94
PspXI VCTCGAGB 1 cut(s) 137
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 2 cut(s) 173, 272
RsaNI GTAC 2 cut(s) 172, 271
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 2 cut(s) 117, 209
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 2 cut(s) 71, 138
SetI ASST 5 cut(s) 90, 125, 150, 173, 192
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 94
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 2 cut(s) 53, 292
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 29, 217
TaqI TCGA 2 cut(s) 37, 138
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 94
XceI RCATGY 2 cut(s) 271, 319
XhoI CTCGAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.