Rw4G019820

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0013941
Physical Location & Seq
Reverse (-)
43396122 .. 43396563
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019820.1

Sequence Viewer

Length: 327 bp
ATGTCTGGGGTTTGGGTTTTCAAGAACGGCGTCGTCCGGCTGGTGGAGAACCCGGGGGCGGATTCCCTACAGGGCTCCAGCGGCCGGCGCAAGGTGTTGGTCCACACTCCCAGTGACGAGGTTATTACCTCTTACGCTGTGCTTGAGCGGAAGCTGCTCTCGCTTGGCTGGGAGAGGTACTACGACGACCCAGATCTCCTTCAGTACCACAAGCGATCCACCGTCCACCTTATCTCTCTCCCCAAGGATTTCAACAAGTTCAAGTCCATGCACATGTACGACATCGTCGTGAAGAACCGGAATCTGTTTGAAGTCAGGGACACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.54

Weight (kDa)

9.26

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 3 cut(s) 59, 81, 148
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 3 cut(s) 179, 206, 278
AfiI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
AflIII ACRYGT 2 cut(s) 273, 321
AgsI TTSAA 4 cut(s) 22, 253, 262, 311
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 2 cut(s) 53, 54
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 53, 54
BfmI CTRYAG 1 cut(s) 68
BglII AGATCT 1 cut(s) 193
BisI GCNGC 2 cut(s) 82, 155
BlsI GCNGC 2 cut(s) 83, 156
Bme1390I CCNGG 2 cut(s) 53, 54
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 53, 54
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 53, 54
BsaAI YACGTR 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 52, 53, 243
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 52, 53, 243
BseLI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
BseNI ACTGG 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 4 cut(s) 37, 53, 85, 298
BslI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
BsnI GGCC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 193, 215
BspACI CCGC 3 cut(s) 59, 81, 148
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 52, 53, 243
BssMI GATC 2 cut(s) 193, 215
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 86
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 196, 218
BstMBI GATC 2 cut(s) 193, 215
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 81, 87, 154, 160
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 51, 52
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 100
Cfr9I CCCGGG 1 cut(s) 52
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 178, 205, 277
CviAII CATG 2 cut(s) 268, 274
CviJI RGCY 5 cut(s) 40, 75, 84, 154, 168
CviKI_1 RGCY 5 cut(s) 40, 75, 84, 154, 168
CviQI GTAC 3 cut(s) 178, 205, 277
DpnI GATC 2 cut(s) 195, 217
DpnII GATC 2 cut(s) 193, 215
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 100
Eco52I CGGCCG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 271, 277
FaiI YATR 2 cut(s) 269, 275
FatI CATG 2 cut(s) 267, 273
Fnu4HI GCNGC 2 cut(s) 82, 155
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 82, 155
GlaI GCGC 1 cut(s) 89
GluI GCNGC 2 cut(s) 82, 155
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 84
HapII CCGG 4 cut(s) 37, 53, 85, 298
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 271, 277
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 2 cut(s) 62, 301
HpaII CCGG 4 cut(s) 37, 53, 85, 298
Hpy166II GTNNAC 2 cut(s) 103, 226
Hpy188III TCNNGA 2 cut(s) 22, 289
Hpy8I GTNNAC 2 cut(s) 103, 226
Hpy99I CGWCG 3 cut(s) 35, 188, 290
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 87, 154, 160
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 271, 277
HspAI GCGC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 193, 215
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 1 cut(s) 141
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 195, 217
MbiI CCGCTC 1 cut(s) 148
MboI GATC 2 cut(s) 193, 215
MboII GAAGA 1 cut(s) 304
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 77
MnlI CCTC 3 cut(s) 112, 139, 168
MroNI GCCGGC 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 272, 287
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 4 cut(s) 37, 53, 85, 298
MspR9I CCNGG 2 cut(s) 53, 54
MwoI GCNNNNNNNGC 4 cut(s) 81, 87, 154, 160
NaeI GCCGGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 2 cut(s) 193, 215
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 2 cut(s) 271, 277
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 62, 301
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 2 cut(s) 83, 156
Ppu21I YACGTR 1 cut(s) 324
PscI ACATGT 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 3 cut(s) 179, 206, 278
RsaNI GTAC 3 cut(s) 178, 205, 277
RseI CAYNNNNRTG 2 cut(s) 272, 287
SatI GCNGC 2 cut(s) 82, 155
Sau3AI GATC 2 cut(s) 193, 215
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 53, 54
SduI GDGCHC 1 cut(s) 77
SetI ASST 7 cut(s) 96, 123, 131, 156, 179, 231, 326
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 272, 287
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 3 cut(s) 59, 81, 148
StyD4I CCNGG 2 cut(s) 51, 52
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 326
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 62, 301
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 52
TspRI CASTG 1 cut(s) 118
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 100
XceI RCATGY 1 cut(s) 277
XmaI CCCGGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.