Rmu_sc0012856.1_g000018

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012856.1
OG0013941
Physical Location & Seq
Forward (+)
73442 .. 74019
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012856.1_g000018.1.cds

Sequence Viewer

Length: 300 bp
atgtctggggtttgggttttcaagaacggcgtcgtccggctggtggagaacccgggggcggattccctacagggctccagcggccggcgcaaggtgttggtccacactcccagtgacgagcggaagctgctctcgcttggctgggaaaggtactacgacgacccagatctccttcagtaccacaagcgatccaccgtccaccttatctctctccccaaggatttcaacaagttcaagtccatgcacatgtacgacatcgtcgtgaagaaccggaatctgtttgaagtcagggacacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.56

Weight (kDa)

9.52

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 3 cut(s) 59, 81, 121
AclWI GGATC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 3 cut(s) 152, 179, 251
AfiI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
AflIII ACRYGT 2 cut(s) 246, 294
AgsI TTSAA 4 cut(s) 22, 226, 235, 284
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 2 cut(s) 53, 54
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 53, 54
BfmI CTRYAG 1 cut(s) 68
BglII AGATCT 1 cut(s) 166
BisI GCNGC 2 cut(s) 82, 128
BlsI GCNGC 2 cut(s) 83, 129
Bme1390I CCNGG 2 cut(s) 53, 54
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 53, 54
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 61
BpuMI CCSGG 2 cut(s) 53, 54
BsaAI YACGTR 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 52, 53, 216
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 52, 53, 216
BseLI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
BseNI ACTGG 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 4 cut(s) 37, 53, 85, 271
BslI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
BsnI GGCC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 166, 188
BspACI CCGC 3 cut(s) 59, 81, 121
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 52, 53, 216
BssMI GATC 2 cut(s) 166, 188
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 86
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 169, 191
BstMBI GATC 2 cut(s) 166, 188
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 81, 87, 127, 133
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 51, 52
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 100
Cfr9I CCCGGG 1 cut(s) 52
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 151, 178, 250
CviAII CATG 2 cut(s) 241, 247
CviJI RGCY 5 cut(s) 40, 75, 84, 127, 141
CviKI_1 RGCY 5 cut(s) 40, 75, 84, 127, 141
CviQI GTAC 3 cut(s) 151, 178, 250
DpnI GATC 2 cut(s) 168, 190
DpnII GATC 2 cut(s) 166, 188
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 100
Eco52I CGGCCG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 244, 250
FaiI YATR 2 cut(s) 242, 248
FatI CATG 2 cut(s) 240, 246
Fnu4HI GCNGC 2 cut(s) 82, 128
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 82, 128
GlaI GCGC 1 cut(s) 89
GluI GCNGC 2 cut(s) 82, 128
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 84
HapII CCGG 4 cut(s) 37, 53, 85, 271
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 244, 250
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 2 cut(s) 62, 274
HpaII CCGG 4 cut(s) 37, 53, 85, 271
Hpy166II GTNNAC 2 cut(s) 103, 199
Hpy188III TCNNGA 2 cut(s) 22, 262
Hpy8I GTNNAC 2 cut(s) 103, 199
Hpy99I CGWCG 3 cut(s) 35, 161, 263
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 87, 127, 133
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 244, 250
HspAI GCGC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 166, 188
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 1 cut(s) 114
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 168, 190
MbiI CCGCTC 1 cut(s) 121
MboI GATC 2 cut(s) 166, 188
MboII GAAGA 1 cut(s) 277
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 245, 260
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 4 cut(s) 37, 53, 85, 271
MspR9I CCNGG 2 cut(s) 53, 54
MwoI GCNNNNNNNGC 4 cut(s) 81, 87, 127, 133
NaeI GCCGGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 2 cut(s) 166, 188
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 2 cut(s) 244, 250
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 250
PciI ACATGT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 62, 274
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 83, 129
Ppu21I YACGTR 1 cut(s) 297
PscI ACATGT 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 3 cut(s) 152, 179, 251
RsaNI GTAC 3 cut(s) 151, 178, 250
RseI CAYNNNNRTG 2 cut(s) 245, 260
SatI GCNGC 2 cut(s) 82, 128
Sau3AI GATC 2 cut(s) 166, 188
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 53, 54
SduI GDGCHC 1 cut(s) 77
SetI ASST 5 cut(s) 96, 129, 152, 204, 299
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 245, 260
SsiI CCGC 3 cut(s) 59, 81, 121
StyD4I CCNGG 2 cut(s) 51, 52
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 299
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 62, 274
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 52
TspRI CASTG 1 cut(s) 118
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 100
XceI RCATGY 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.