FvH4_4g17910

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013941
Physical Location & Seq
Forward (+)
21885482 .. 21885808
327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17910.t1

Sequence Viewer

Length: 327 bp
ATGTCTGGGGTTTGGGTTTTCAAGAACGGCGTCGTCCGGTTGGTGGAGAACCCGGGGGCGGATTCCCTGCATGGCTCCAACGGCCGGCGCAAGGTTTTGGTTCACACTCCCAGTGACGAGGTCATCAGCTCTTACGCTGTGCTCGAGAGGAAGCTGTTCTCACTTGGCTGGGAGAGGTACTACGACGACCCAGATCTCCTTCAGTACCACAAGCGCTCCACCGTCCACCTCATCTCTCTCCCCAAGGATTTCAACAGGTTCAAGTCCATGCACATGTACGACATCGTCGTCAAGAACCGGAATCTGTTTGAAGTCAGGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.65

Weight (kDa)

9.3

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 3 cut(s) 179, 206, 278
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
AflIII ACRYGT 2 cut(s) 273, 321
AgsI TTSAA 4 cut(s) 22, 253, 262, 311
AluBI AGCT 2 cut(s) 129, 154
AluI AGCT 2 cut(s) 129, 154
Alw21I GWGCWC 1 cut(s) 144
Ama87I CYCGRG 2 cut(s) 52, 143
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 2 cut(s) 90, 216
AsuC2I CCSGG 2 cut(s) 53, 54
AvaI CYCGRG 2 cut(s) 52, 143
Bbv12I GWGCWC 1 cut(s) 144
BceAI ACGGC 2 cut(s) 43, 97
BcnI CCSGG 2 cut(s) 53, 54
BfoI RGCGCY 1 cut(s) 217
BglII AGATCT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 53, 54
BmeT110I CYCGRG 2 cut(s) 52, 143
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 53, 54
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 53, 54
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 52, 53, 243
BsaWI WCCGGW 2 cut(s) 36, 297
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 52, 53, 243
BseLI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
BseNI ACTGG 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 2 cut(s) 52, 143
BsiSI CCGG 4 cut(s) 37, 53, 85, 298
BslI CCNNNNNNNGG 4 cut(s) 43, 58, 84, 91
BsnI GGCC 1 cut(s) 84
BsoBI CYCGRG 2 cut(s) 52, 143
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 52, 53, 243
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 2 cut(s) 90, 216
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNSI RCATGY 2 cut(s) 277, 325
BstSCI CCNGG 2 cut(s) 51, 52
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 2 cut(s) 90, 216
Cfr10I RCCGGY 1 cut(s) 84
Cfr9I CCCGGG 1 cut(s) 52
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 178, 205, 277
CviAII CATG 4 cut(s) 71, 268, 274, 322
CviJI RGCY 5 cut(s) 75, 84, 129, 154, 168
CviKI_1 RGCY 5 cut(s) 75, 84, 129, 154, 168
CviQI GTAC 3 cut(s) 178, 205, 277
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 215
Eco52I CGGCCG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 2 cut(s) 52, 143
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 4 cut(s) 74, 271, 277, 325
FaiI YATR 4 cut(s) 72, 269, 275, 323
FatI CATG 4 cut(s) 70, 267, 273, 321
GlaI GCGC 2 cut(s) 89, 215
GsaI CCCAGC 1 cut(s) 172
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 1 cut(s) 84
HapII CCGG 4 cut(s) 37, 53, 85, 298
HgaI GACGC 1 cut(s) 19
HhaI GCGC 2 cut(s) 90, 216
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 4 cut(s) 74, 271, 277, 325
Hin6I GCGC 2 cut(s) 88, 214
HinP1I GCGC 2 cut(s) 88, 214
HinfI GANTC 2 cut(s) 62, 301
HpaII CCGG 4 cut(s) 37, 53, 85, 298
Hpy166II GTNNAC 2 cut(s) 103, 226
Hpy188III TCNNGA 3 cut(s) 22, 145, 292
Hpy8I GTNNAC 2 cut(s) 103, 226
Hpy99I CGWCG 3 cut(s) 35, 188, 290
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 70, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 4 cut(s) 74, 271, 277, 325
HspAI GCGC 2 cut(s) 88, 214
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 80, 221
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 4 cut(s) 112, 141, 168, 239
MroNI GCCGGC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 4 cut(s) 37, 53, 85, 298
MspR9I CCNGG 2 cut(s) 53, 54
MwoI GCNNNNNNNGC 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 1 cut(s) 193
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 4 cut(s) 74, 271, 277, 325
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 2 cut(s) 277, 325
PaeR7I CTCGAG 1 cut(s) 143
PciI ACATGT 2 cut(s) 273, 321
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 285
PdiI GCCGGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 62, 301
PflFI GACNNNGTC 2 cut(s) 119, 284
PscI ACATGT 2 cut(s) 273, 321
PspFI CCCAGC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 2 cut(s) 119, 284
RsaI GTAC 3 cut(s) 179, 206, 278
RsaNI GTAC 3 cut(s) 178, 205, 277
RseI CAYNNNNRTG 1 cut(s) 272
Sau3AI GATC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 53, 54
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 96, 123, 131, 156, 179, 231, 260
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 51, 52
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 144
TfiI GAWTC 2 cut(s) 62, 301
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 52
TspRI CASTG 1 cut(s) 118
Tth111I GACNNNGTC 2 cut(s) 119, 284
XceI RCATGY 2 cut(s) 277, 325
XhoI CTCGAG 1 cut(s) 143
XmaI CCCGGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.