Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001808

Physical Location & Seq

Genomic Coordinates Forward (+)

15243723 .. 15245838

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTCTGGAACAACAACATGTTTGTGAAAAGCGGCTTCAAGCCAAGACCTTTTCTACCCAAGAGTTTCAGTTGACTCTCAATTGGGATGATTTAACTTGTCCCATTTGTTTGGATTTCCCTCACAATGGTGTGCTTCTCCAGTGTTCTTCTTACGGAAACGGTTGCCGTGCTTTTGTCTGCAATACTGATCACCTTCACTCTAACTGTTTGGATCGTTTCATTAGCGCCTGTGGTACTGAATCACCTCCTGCTCCTGATGAGCCTCGCTCTAAGGTTTTAGAAGAGAGTTGCAAACCTGTGTGTCCACTGTGTAGAGGAGAAGTTACTGGCTGGCTTGTTGTAGAAGAAGCTCGTCTTCGTCTTGATGAGAAAAAACGTTGCTGTGAGGAAGAACGATGCAGGTTTATGGGTACTTACTTGGAGCTTCGCAAACATGCTCAGTCAGAGCATCCGGATTCTCGTCCTTCAGAAATTGATCCAGCACGGAAGCTTGACTGGGAGAATTTCCAGCAGTCGTCTGAAATAATCGACGTGTTGAGCACAATTCACTCAGAAGTTCCAAGAGGAGTGGTTTTAGGGGACTATGTGATCGAATATGGAGATGATGACACAGGAGATGAATTTGAGGATGTTCCCAACAATGAAGGAAACTGGTGGACATCTTGTATTCTCTATCAAATGTTTGACAATATAAGGAATGCCAGGAATCGAAGAAGATCAAGAATGAGTGAGAGTAGGAGAGGGAGTCGCCGCTCTAGCTATGAGAATTCCAACTCTGATGACAGCTCAGTAGCATCCATAGAGTTTCCGGAGTATAGAGTAGATGAGATCGATGACGAGTTCATCAGCACAAGTGGAGCTAACAGAAGTAGCTCTATGCACCAAAGTTCAAGAAGGCGTCGAACCCGCTTCTATGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

308

Amino Acids

35.61

Weight (kDa)

5.08

Isoelectric Point (pI)

78.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1644	PF07800	30 - 181	8.3e-59	Protein of unknown function (DUF1644)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31410 AT4G31410 AT4G31410
fragaria_vesca	FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920
malus_domestica	MD08G1131200.v1.1 MD15G1108900.v1.1
prunus_persica	Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0304861
rosa_laevigata	RLG00000010944
rosa_multiflora	Rmu_co8319573.1_g000001 Rmu_ssc0000278.1_g000007
rosa_rugosa	Rorug06G0335700 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335900.1
rosa_samantha	Rh6AG447000 Rh6BG454600 Rh6CG460500 Rh6DG447500
rosa_wichuraiana	Rw6G038910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	756
AccIII	TCCGGA	2 cut(s)	454, 811
AciI	CCGC	3 cut(s)	34, 754, 910
AclI	AACGTT	1 cut(s)	379
AclWI	GGATC	2 cut(s)	222, 473
AcsI	RAATTY	3 cut(s)	505, 623, 769
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	901
AfaI	GTAC	2 cut(s)	238, 415
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	2 cut(s)	19, 534
AgsI	TTSAA	2 cut(s)	41, 894
AjiI	CACGTC	1 cut(s)	535
AjnI	CCWGG	1 cut(s)	704
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	7 cut(s)	353, 427, 493, 762, 789, 863, 876
AluI	AGCT	7 cut(s)	353, 427, 493, 762, 789, 863, 876
Alw21I	GWGCWC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	222, 473
Aor13HI	TCCGGA	2 cut(s)	454, 811
ApoI	RAATTY	3 cut(s)	505, 623, 769
AspLEI	GCGC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	185, 237
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	545
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	706
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	2 cut(s)	35, 754
BlsI	GCNGC	2 cut(s)	36, 755
Bme1390I	CCNGG	1 cut(s)	706
BmgBI	CACGTC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	706
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	3 cut(s)	389, 460, 806
BmuI	ACTGGG	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	901
BsaWI	WCCGGW	2 cut(s)	454, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	4 cut(s)	142, 334, 503, 659
BseAI	TCCGGA	2 cut(s)	454, 811
BseBI	CCWGG	1 cut(s)	706
BseCI	ATCGAT	1 cut(s)	834
BseGI	GGATG	4 cut(s)	94, 451, 637, 797
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	3 cut(s)	455, 567, 804
BseNI	ACTGG	4 cut(s)	142, 334, 503, 659
BseRI	GAGGAG	2 cut(s)	333, 582
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	455, 812
BslFI	GGGAC	2 cut(s)	87, 596
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	87, 596
BsmI	GAATGC	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp13I	TCCGGA	2 cut(s)	454, 811
Bsp143I	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
BspACI	CCGC	3 cut(s)	34, 754, 910
BspCNI	CTCAG	3 cut(s)	454, 566, 803
BspDI	ATCGAT	1 cut(s)	834
BspEI	TCCGGA	2 cut(s)	454, 811
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	222, 473
BsrBI	CCGCTC	1 cut(s)	756
BsrI	ACTGG	4 cut(s)	142, 334, 503, 659
BssMI	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
BssNI	GRCGYC	1 cut(s)	901
Bst2UI	CCWGG	1 cut(s)	706
Bst4CI	ACNGT	3 cut(s)	164, 209, 312
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	901
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	4 cut(s)	273, 441, 553, 790
BstF5I	GGATG	4 cut(s)	94, 451, 637, 797
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	6 cut(s)	193, 217, 481, 594, 722, 834
BstMBI	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstNI	CCWGG	1 cut(s)	706
BstNSI	RCATGY	2 cut(s)	23, 440
BstSCI	CCNGG	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	834
BsuTUI	ATCGAT	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	535
BtsCI	GGATG	4 cut(s)	94, 451, 637, 797
BtsIMutI	CAGTG	2 cut(s)	149, 308
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	237, 414
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	2 cut(s)	20, 437
CviQI	GTAC	2 cut(s)	237, 414
DdeI	CTNAG	4 cut(s)	273, 441, 553, 790
DpnI	GATC	6 cut(s)	192, 216, 480, 593, 721, 833
DpnII	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	1 cut(s)	704
FaeI	CATG	2 cut(s)	23, 440
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	87, 596
FatI	CATG	2 cut(s)	19, 436
FauI	CCCGC	1 cut(s)	917
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	35, 754
FokI	GGATG	4 cut(s)	101, 438, 644, 784
Fsp4HI	GCNGC	2 cut(s)	35, 754
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	35, 754
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	231
HapII	CCGG	2 cut(s)	455, 812
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	901
Hin1II	CATG	2 cut(s)	23, 440
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	76, 242, 458, 709, 748
HpaII	CCGG	2 cut(s)	455, 812
HphI	GGTGA	2 cut(s)	185, 237
Hpy166II	GTNNAC	3 cut(s)	75, 308, 660
Hpy188I	TCNGA	5 cut(s)	448, 472, 523, 556, 781
Hpy188III	TCNNGA	7 cut(s)	8, 257, 365, 455, 723, 812, 894
Hpy8I	GTNNAC	3 cut(s)	75, 308, 660
Hpy99I	CGWCG	2 cut(s)	536, 906
HpyAV	CCTTC	4 cut(s)	206, 477, 641, 891
HpyCH4III	ACNGT	3 cut(s)	164, 209, 312
HpyCH4IV	ACGT	2 cut(s)	379, 534
HpyCH4V	TGCA	4 cut(s)	183, 294, 402, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	4 cut(s)	273, 441, 553, 790
HpySE526I	ACGT	2 cut(s)	379, 534
Hsp92I	GRCGYC	1 cut(s)	901
Hsp92II	CATG	2 cut(s)	23, 440
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	2 cut(s)	454, 811
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
LmnI	GCTCC	3 cut(s)	259, 424, 860
LweI	GCATC	3 cut(s)	389, 460, 806
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	2 cut(s)	379, 534
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	6 cut(s)	192, 216, 480, 593, 721, 833
MbiI	CCGCTC	1 cut(s)	756
MboI	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
MboII	GAAGA	7 cut(s)	141, 296, 350, 359, 404, 726, 729
MfeI	CAATTG	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	7 cut(s)	82, 474, 505, 546, 623, 769, 922
MlyI	GAGTC	2 cut(s)	70, 757
MmeI	TCCRAC	1 cut(s)	798
MnlI	CCTC	8 cut(s)	132, 258, 276, 311, 382, 560, 622, 737
MroI	TCCGGA	2 cut(s)	454, 811
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	2 cut(s)	24, 129
MspI	CCGG	2 cut(s)	455, 812
MspR9I	CCNGG	1 cut(s)	706
MunI	CAATTG	1 cut(s)	82
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	1 cut(s)	706
MwoI	GCNNNNNNNGC	1 cut(s)	759
NdeII	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
NlaIII	CATG	2 cut(s)	23, 440
NspI	RCATGY	2 cut(s)	23, 440
OliI	CACNNNNGTG	1 cut(s)	129
PciI	ACATGT	1 cut(s)	19
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	3 cut(s)	242, 458, 709
PkrI	GCNGC	2 cut(s)	36, 755
PleI	GAGTC	2 cut(s)	70, 756
PpsI	GAGTC	2 cut(s)	70, 756
PscI	ACATGT	1 cut(s)	19
Psp1406I	AACGTT	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	704
RsaI	GTAC	2 cut(s)	238, 415
RsaNI	GTAC	2 cut(s)	237, 414
RseI	CAYNNNNRTG	2 cut(s)	24, 129
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	35, 754
Sau3AI	GATC	6 cut(s)	190, 214, 478, 591, 719, 831
SchI	GAGTC	2 cut(s)	70, 757
ScrFI	CCNGG	1 cut(s)	706
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	3 cut(s)	389, 460, 806
SmiMI	CAYNNNNRTG	2 cut(s)	24, 129
Sse9I	AATT	7 cut(s)	82, 474, 505, 546, 623, 769, 922
SsiI	CCGC	3 cut(s)	34, 754, 910
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	704
TaaI	ACNGT	3 cut(s)	164, 209, 312
TaiI	ACGT	2 cut(s)	382, 537
TaqI	TCGA	5 cut(s)	531, 594, 712, 834, 904
TasI	AATT	7 cut(s)	82, 474, 505, 546, 623, 769, 922
TauI	GCSGC	2 cut(s)	37, 756
TfiI	GAWTC	3 cut(s)	242, 458, 709
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	149, 315
TspDTI	ATGAA	4 cut(s)	211, 636, 660, 835
TspGWI	ACGGA	2 cut(s)	171, 502
TspRI	CASTG	2 cut(s)	149, 315
XapI	RAATTY	3 cut(s)	505, 623, 769
XceI	RCATGY	2 cut(s)	23, 440
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.