Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001808

Physical Location & Seq

Genomic Coordinates Reverse (-)

5558798 .. 5560583

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCCTTTGAAGCTTCTAATGGAAGAGGGCTTCAGCCCAGTTTATTCAACGTGGATGATATCGAGTTAAATACAAATTGGGAAGATGTTACTTGTCCTATATGTTTGGATTTCCCTCACAATGGCGTACTCCTACAGTGCACATCGCACAATAATGGATGCCGTCCTTTTGTCTGTGACACAAACCACTTGCACTCAAATTGTTTGGACCGTTTCAAAAATGCAAATGGTATGTCATCTCCTTCAAAATCTGATGCTAGTCTGACAAGTGACGCTGAGCCAGTGGCATCAGAAGACAACTGCAAGCCAACTTGCCCATTGTGTAGGGGTGAAGTGACTGGGTGGGTTGTTGTCGATAAGGCTCGTGTTCATCTCGATGTGAAGAAGCGTTGTTGCGAGGAGCAACGATGCACATTTATGGGTACATACTTGGAATTGCAAAAACATGCTGAACTGGAGCACCCTCATTCTCAACCATCAAAAATTGATCCTGCTCGGCAGCTTGATTGGGAAAATTTCCAACAGTCTTCGGAGATCATAGATGTTTTGAGCACTATACATTCGGAAGTCCCTCGGGGGGTTGTTTTAGGAGATTATGTGATTGAATATGGTGATGATGAGACTGGGGATGAGTTTGAGGACTTCCCTGGCGACGAACGTAACTGGTGGACCTCCTGTATATTGTATCAGGTATTTGATAACTTGAGGAATTCCAGAAATAGAAGAAGGTCAAGAGTTGGTGACACTAGAAGAGGAGGCCGCCGAGCAAGCTATGATGCAAATTCTGATGACGGTTCTGTGACATCTGTTGACTTCACAGACTACAGGACAGATGAGATTGATGATGAGTTTATGAGTTCAAGTGGCTCCTCCAGGGGTGGCTCAAGTCATCGCAGTAGGAACATTTTGATGGGGTTTTGGGAGCTCAGCACTGGCACTGATACTGCTGTTCCCGTAGACGACGCTCTCGCTTCTATGACAGTTAGTGCTAATAGGATAGAAAGGAAGGGAAAGACAGAGAGATCCATTGGAAGTCTAGAAGTGGAAAGCACCGGGATGCTTGATGTGGATCTCTTCAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

362

Amino Acids

40.36

Weight (kDa)

4.75

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1644	PF07800	28 - 184	2.7e-63	Protein of unknown function (DUF1644)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31410 AT4G31410 AT4G31410
fragaria_vesca	FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920
malus_domestica	MD08G1131200.v1.1 MD15G1108900.v1.1
prunus_persica	Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0304861
rosa_laevigata	RLG00000010944
rosa_multiflora	Rmu_co8319573.1_g000001 Rmu_ssc0000278.1_g000007
rosa_rugosa	Rorug06G0335700 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335900.1
rosa_samantha	Rh6AG447000 Rh6BG454600 Rh6CG460500 Rh6DG447500
rosa_wichuraiana	Rw6G038910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	957
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	3 cut(s)	482, 1017, 1077
AcsI	RAATTY	3 cut(s)	514, 709, 781
AcuI	CTGAAG	2 cut(s)	17, 1060
AfaI	GTAC	2 cut(s)	129, 424
AfiI	CCNNNNNNNGG	2 cut(s)	122, 577
AgsI	TTSAA	6 cut(s)	11, 49, 217, 246, 605, 861
AjnI	CCWGG	2 cut(s)	646, 872
AluBI	AGCT	4 cut(s)	14, 502, 771, 925
AluI	AGCT	4 cut(s)	14, 502, 771, 925
Alw21I	GWGCWC	4 cut(s)	143, 462, 554, 927
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	482, 1017, 1077
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	2 cut(s)	3, 757
ApaLI	GTGCAC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	3 cut(s)	514, 709, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	2 cut(s)	208, 669
AsuC2I	CCSGG	1 cut(s)	1054
AsuHPI	GGTGA	3 cut(s)	341, 623, 752
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	208, 669
BaeGI	GKGCMC	1 cut(s)	143
BaeI	ACNNNNGTAYC	2 cut(s)	933, 966
BanII	GRGCYC	1 cut(s)	927
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	300, 519
Bbv12I	GWGCWC	4 cut(s)	143, 462, 554, 927
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	484, 904
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	648, 874
BcnI	CCSGG	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	3 cut(s)	258, 747, 1037
BfmI	CTRYAG	2 cut(s)	134, 823
BisI	GCNGC	2 cut(s)	500, 760
BlpI	GCTNAGC	2 cut(s)	276, 926
BlsI	GCNGC	2 cut(s)	501, 761
Bme1390I	CCNGG	3 cut(s)	648, 874, 1054
Bme18I	GGWCC	2 cut(s)	208, 669
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	2 cut(s)	208, 669
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	3 cut(s)	648, 874, 1054
BmrI	ACTGGG	3 cut(s)	33, 348, 633
BmsI	GCATC	6 cut(s)	149, 244, 296, 398, 766, 1047
BmuI	ACTGGG	3 cut(s)	33, 348, 633
BpiI	GAAGAC	2 cut(s)	300, 519
BpmI	CTGGAG	2 cut(s)	476, 856
Bpu1102I	GCTNAGC	2 cut(s)	276, 926
BpuEI	CTTGAG	2 cut(s)	724, 868
BpuMI	CCSGG	1 cut(s)	1054
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaJI	CCNNGG	3 cut(s)	572, 646, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 577
Bse1I	ACTGG	7 cut(s)	39, 281, 343, 459, 628, 668, 937
Bse8I	GATNNNNATC	1 cut(s)	1068
BseBI	CCWGG	2 cut(s)	648, 874
BseDI	CCNNGG	3 cut(s)	572, 646, 873
BseGI	GGATG	4 cut(s)	61, 164, 634, 1062
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	2 cut(s)	122, 577
BseMII	CTCAG	2 cut(s)	267, 940
BseNI	ACTGG	7 cut(s)	39, 281, 343, 459, 628, 668, 937
BseRI	GAGGAG	3 cut(s)	413, 768, 859
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	5, 759
BsiHKAI	GWGCWC	4 cut(s)	143, 462, 554, 927
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	1053
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	122, 577
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	5, 759
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	4 cut(s)	143, 462, 554, 927
Bsp143I	GATC	4 cut(s)	487, 534, 1022, 1069
Bsp1720I	GCTNAGC	2 cut(s)	276, 926
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	2 cut(s)	5, 759
BspCNI	CTCAG	2 cut(s)	268, 939
BspLI	GGNNCC	1 cut(s)	868
BspPI	GGATC	3 cut(s)	482, 1017, 1077
BsrI	ACTGG	7 cut(s)	39, 281, 343, 459, 628, 668, 937
BssECI	CCNNGG	3 cut(s)	572, 646, 873
BssMI	GATC	4 cut(s)	487, 534, 1022, 1069
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	648, 874
Bst4CI	ACNGT	5 cut(s)	138, 212, 525, 794, 982
Bst6I	CTCTTC	3 cut(s)	19, 745, 1079
BstC8I	GCNNGC	2 cut(s)	305, 769
BstDEI	CTNAG	2 cut(s)	276, 926
BstF5I	GGATG	4 cut(s)	61, 164, 634, 1062
BstKTI	GATC	4 cut(s)	490, 537, 1025, 1072
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	487, 534, 1022, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 768
BstNI	CCWGG	2 cut(s)	648, 874
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	646, 872, 1052
BstSFI	CTRYAG	2 cut(s)	134, 823
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	2 cut(s)	300, 519
BstX2I	RGATCY	2 cut(s)	1022, 1069
BstYI	RGATCY	2 cut(s)	1022, 1069
BsuRI	GGCC	2 cut(s)	5, 759
BtgZI	GCGATG	2 cut(s)	129, 875
BtsCI	GGATG	4 cut(s)	61, 164, 634, 1062
BtsIMutI	CAGTG	5 cut(s)	143, 288, 930, 936, 1084
Cac8I	GCNNGC	2 cut(s)	305, 769
Cfr13I	GGNCC	2 cut(s)	208, 669
CseI	GACGC	2 cut(s)	281, 971
Csp6I	GTAC	2 cut(s)	128, 423
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	2 cut(s)	128, 423
DdeI	CTNAG	2 cut(s)	276, 926
DpnI	GATC	4 cut(s)	489, 536, 1024, 1071
DpnII	GATC	4 cut(s)	487, 534, 1022, 1069
Eam1104I	CTCTTC	3 cut(s)	19, 745, 1079
EarI	CTCTTC	3 cut(s)	19, 745, 1079
Ecl136II	GAGCTC	1 cut(s)	925
Eco24I	GRGCYC	1 cut(s)	927
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	208, 669
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	2 cut(s)	17, 1060
Eco88I	CYCGRG	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	646, 872
EcoRV	GATATC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	927
FaeI	CATG	1 cut(s)	449
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	2 cut(s)	500, 760
FokI	GGATG	4 cut(s)	68, 171, 641, 1069
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	2 cut(s)	500, 760
FspBI	CTAG	3 cut(s)	258, 747, 1037
GluI	GCNGC	2 cut(s)	500, 760
GsuI	CTGGAG	2 cut(s)	476, 856
HaeIII	GGCC	2 cut(s)	5, 759
HapII	CCGG	1 cut(s)	1053
HgaI	GACGC	2 cut(s)	281, 971
Hin1II	CATG	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	12
HpaII	CCGG	1 cut(s)	1053
HphI	GGTGA	3 cut(s)	341, 623, 752
Hpy166II	GTNNAC	4 cut(s)	141, 669, 811, 958
Hpy188I	TCNGA	6 cut(s)	253, 264, 292, 532, 565, 787
Hpy188III	TCNNGA	4 cut(s)	374, 714, 732, 1037
Hpy8I	GTNNAC	4 cut(s)	141, 669, 811, 958
Hpy99I	CGWCG	2 cut(s)	656, 965
HpyAV	CCTTC	3 cut(s)	252, 720, 1000
HpyCH4III	ACNGT	5 cut(s)	138, 212, 525, 794, 982
HpyCH4IV	ACGT	2 cut(s)	51, 658
HpyCH4V	TGCA	7 cut(s)	141, 193, 224, 303, 411, 439, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 768
HpyF3I	CTNAG	2 cut(s)	276, 926
HpySE526I	ACGT	2 cut(s)	51, 658
Hsp92II	CATG	1 cut(s)	449
Kzo9I	GATC	4 cut(s)	487, 534, 1022, 1069
LmnI	GCTCC	4 cut(s)	400, 457, 872, 922
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	6 cut(s)	149, 244, 296, 398, 766, 1047
MaeI	CTAG	3 cut(s)	258, 747, 1037
MaeII	ACGT	2 cut(s)	51, 658
MaeIII	GTNAC	7 cut(s)	88, 176, 269, 334, 659, 740, 799
MalI	GATC	4 cut(s)	489, 536, 1024, 1071
MboI	GATC	4 cut(s)	487, 534, 1022, 1069
MboII	GAAGA	8 cut(s)	36, 95, 305, 394, 519, 735, 762, 1066
MflI	RGATCY	2 cut(s)	1022, 1069
MhlI	GDGCHC	4 cut(s)	143, 462, 554, 927
MluCI	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
MmeI	TCCRAC	1 cut(s)	544
MseI	TTAA	2 cut(s)	68, 1084
MslI	CAYNNNNRTG	5 cut(s)	153, 375, 416, 908, 1055
MspI	CCGG	1 cut(s)	1053
MspR9I	CCNGG	3 cut(s)	648, 874, 1054
MvaI	CCWGG	2 cut(s)	648, 874
MwoI	GCNNNNNNNGC	2 cut(s)	11, 768
NciI	CCSGG	1 cut(s)	1054
NdeII	GATC	4 cut(s)	487, 534, 1022, 1069
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	1 cut(s)	868
NmeAIII	GCCGAG	2 cut(s)	475, 788
NmuCI	GTSAC	5 cut(s)	176, 269, 334, 740, 799
NspI	RCATGY	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	501, 761
Psp124BI	GAGCTC	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	646, 872
PspGI	CCWGG	2 cut(s)	646, 872
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	2 cut(s)	208, 669
PsuI	RGATCY	2 cut(s)	1022, 1069
RsaI	GTAC	2 cut(s)	129, 424
RsaNI	GTAC	2 cut(s)	128, 423
RseI	CAYNNNNRTG	5 cut(s)	153, 375, 416, 908, 1055
SacI	GAGCTC	1 cut(s)	927
SaqAI	TTAA	2 cut(s)	68, 1084
SatI	GCNGC	2 cut(s)	500, 760
Sau3AI	GATC	4 cut(s)	487, 534, 1022, 1069
Sau96I	GGNCC	2 cut(s)	208, 669
ScrFI	CCNGG	3 cut(s)	648, 874, 1054
SduI	GDGCHC	4 cut(s)	143, 462, 554, 927
SetI	ASST	9 cut(s)	16, 54, 504, 661, 674, 693, 731, 773, 927
SfaNI	GCATC	6 cut(s)	149, 244, 296, 398, 766, 1047
SfcI	CTRYAG	2 cut(s)	134, 823
SinI	GGWCC	2 cut(s)	208, 669
SmiMI	CAYNNNNRTG	5 cut(s)	153, 375, 416, 908, 1055
SmlI	CTYRAG	2 cut(s)	703, 883
SmoI	CTYRAG	2 cut(s)	703, 883
Sse9I	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	3 cut(s)	258, 747, 1037
SstI	GAGCTC	1 cut(s)	927
StyD4I	CCNGG	3 cut(s)	646, 872, 1052
TaaI	ACNGT	5 cut(s)	138, 212, 525, 794, 982
TaiI	ACGT	2 cut(s)	54, 661
TaqI	TCGA	3 cut(s)	63, 354, 375
TasI	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
TauI	GCSGC	1 cut(s)	762
Tru1I	TTAA	2 cut(s)	68, 1084
Tru9I	TTAA	2 cut(s)	68, 1084
TscAI	CASTG	5 cut(s)	143, 288, 937, 943, 1084
TseFI	GTSAC	5 cut(s)	176, 269, 334, 740, 799
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	5 cut(s)	176, 269, 334, 740, 799
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	5 cut(s)	143, 288, 937, 943, 1084
VneI	GTGCAC	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	208, 669
XapI	RAATTY	3 cut(s)	514, 709, 781
XbaI	TCTAGA	1 cut(s)	1036
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	3 cut(s)	258, 747, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.