Prupe.1G461100_v2.0.a1

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001808
Physical Location & Seq
Reverse (-)
38551080 .. 38555124
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G461100.4

Sequence Viewer

Length: 942 bp
ATGGCCTTTAAAGATTCTAATGAAAGAGGAGTTGGGCTTCAACCAAGTTCATTCAATATGGAAGATGTTGAATTAAATACAAATTGGGAAGATGTGACTTGTCCTATATGTTTGGATTTCCCTCACAACGGTGTACTCCTTCAGTGCTCATCTTATGAGAAAGGATGCCATGCTTTTGTTTGTGATACAAACCACTTACACTCCAATTGTTTAGACCGTTTCAAAAGTGCATATGGTATGTCATCTCCTTCAAAATCTGATGTGAGTCCTGCAGTAAATACTGAACAAATGGCATCAGAAGAAGATTGCAGGCCTACTTGTCCCTTGTGTAGGGGGGAAGTTACTGGGTGGGTTGTTGTTGACAAGGCTCGTAGACATCTAGATGTGAAGAAGCGTTGTTGTGAGGAGCATCAATGTACGTTTATGGGTACATACTTGGAATTACAAAAACATGCTCAACTAGAGCATCCTCATTCTCGTCCTTCAAAAATTGATCCTGCTCGGCAGCTTGATTGGGATAATTTCCAGCAGTCCTCCGAGATCATAGATGTTTTGAGCACTATTCATTCCGAAGTCCCTCGTGGGGTGGTTTTAGGAGACTATGTGATTGAATATGGTGATGATGAGACTGGAGATGAGTTTGAGGACTTCCATGGGGACGAACGTAACTGGTGGACCTCCTGTATCTTATATCAGGTTTTTGATAACTTACGAAATTCTAGAAACAGAAGAAGGTCAAGAGTTGGTGACGCAAGAAGAGGAAGTCGCCGAGCAAGCTACGATAATTCGAATTCTGATGAAGGTTCTGTGACATCTGTTGAATTCCCTGAGTATAGAGCAGATGAGACTGATGATGATTTTATGAGTACAAATGGCTCCTCCAGGGGTGGCTCCAGTCATCGCAGTTCACGTAGACGTCGTTCTCGCTTCTATGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

314

Amino Acids

35.82

Weight (kDa)

5.26

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 919
AccI GTMKAC 2 cut(s) 373, 913
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 3 cut(s) 715, 790, 821
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 916
AfaI GTAC 4 cut(s) 135, 418, 430, 868
AfiI CCNNNNNNNGG 3 cut(s) 128, 330, 583
AgsI TTSAA 8 cut(s) 41, 55, 71, 223, 252, 486, 611, 821
AjnI CCWGG 1 cut(s) 881
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 2 cut(s) 508, 777
AluI AGCT 2 cut(s) 508, 777
Alw21I GWGCWC 2 cut(s) 149, 560
Alw26I GTCTC 3 cut(s) 591, 620, 839
AlwI GGATC 1 cut(s) 488
AoxI GGCC 2 cut(s) 3, 311
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 3 cut(s) 715, 790, 821
AspS9I GGNCC 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 629, 758
AsuII TTCGAA 1 cut(s) 788
AvaII GGWCC 1 cut(s) 675
BauI CACGAG 1 cut(s) 579
Bbv12I GWGCWC 2 cut(s) 149, 560
BbvI GCAGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 883
BcoDI GTCTC 3 cut(s) 591, 620, 839
BfaI CTAG 3 cut(s) 380, 461, 720
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
Bme1390I CCNGG 1 cut(s) 883
Bme18I GGWCC 1 cut(s) 675
BmgT120I GGNCC 1 cut(s) 675
BmiI GGNNCC 2 cut(s) 877, 892
BmrFI CCNGG 1 cut(s) 883
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 4 cut(s) 155, 302, 418, 475
BmuI ACTGGG 1 cut(s) 354
BpmI CTGGAG 3 cut(s) 651, 865, 877
Bpu14I TTCGAA 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 916
BsaJI CCNNGG 2 cut(s) 652, 882
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 588, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 330, 583
Bse1I ACTGG 4 cut(s) 349, 634, 674, 894
BseBI CCWGG 1 cut(s) 883
BseDI CCNNGG 2 cut(s) 652, 882
BseGI GGATG 2 cut(s) 170, 466
BseLI CCNNNNNNNGG 3 cut(s) 128, 330, 583
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 4 cut(s) 349, 634, 674, 894
BseRI GAGGAG 3 cut(s) 42, 419, 868
BseXI GCAGC 1 cut(s) 517
BshFI GGCC 2 cut(s) 5, 313
BsiHKAI GWGCWC 2 cut(s) 149, 560
BslFI GGGAC 3 cut(s) 306, 560, 671
BslI CCNNNNNNNGG 3 cut(s) 128, 330, 583
BsmAI GTCTC 3 cut(s) 591, 620, 839
BsmFI GGGAC 3 cut(s) 306, 560, 671
BsnI GGCC 2 cut(s) 5, 313
Bsp119I TTCGAA 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 149, 560
Bsp143I GATC 2 cut(s) 493, 540
Bsp19I CCATGG 1 cut(s) 652
BspANI GGCC 2 cut(s) 5, 313
BspCNI CTCAG 1 cut(s) 820
BspLI GGNNCC 2 cut(s) 877, 892
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 1 cut(s) 488
BspT104I TTCGAA 1 cut(s) 788
BsrI ACTGG 4 cut(s) 349, 634, 674, 894
BssECI CCNNGG 2 cut(s) 652, 882
BssMI GATC 2 cut(s) 493, 540
BssNI GRCGYC 1 cut(s) 916
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 652
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 883
Bst4CI ACNGT 2 cut(s) 131, 218
Bst6I CTCTTC 1 cut(s) 751
BstACI GRCGYC 1 cut(s) 916
BstBAI YACGTR 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 311, 775
BstDEI CTNAG 1 cut(s) 828
BstDSI CCRYGG 1 cut(s) 652
BstENI CCTNNNNNAGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 170, 466
BstKTI GATC 2 cut(s) 496, 543
BstMAI GTCTC 3 cut(s) 591, 620, 839
BstMBI GATC 2 cut(s) 493, 540
BstMWI GCNNNNNNNGC 1 cut(s) 774
BstNI CCWGG 1 cut(s) 883
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 881
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 5, 313
BtgI CCRYGG 1 cut(s) 652
BtgZI GCGATG 1 cut(s) 884
BtsCI GGATG 2 cut(s) 170, 466
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 311, 775
Cfr13I GGNCC 1 cut(s) 675
CseI GACGC 1 cut(s) 758
Csp6I GTAC 4 cut(s) 134, 417, 429, 867
CviAII CATG 3 cut(s) 170, 452, 653
CviJI RGCY 8 cut(s) 5, 37, 313, 368, 508, 777, 876, 891
CviKI_1 RGCY 8 cut(s) 5, 37, 313, 368, 508, 777, 876, 891
CviQI GTAC 4 cut(s) 134, 417, 429, 867
DdeI CTNAG 1 cut(s) 828
DpnI GATC 2 cut(s) 495, 542
DpnII GATC 2 cut(s) 493, 540
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 751
EarI CTCTTC 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 652
Eco147I AGGCCT 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 328
EcoRI GAATTC 2 cut(s) 790, 821
EcoRII CCWGG 1 cut(s) 881
EcoT14I CCWWGG 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 3 cut(s) 173, 455, 656
FaqI GGGAC 3 cut(s) 306, 560, 671
FatI CATG 3 cut(s) 169, 451, 652
FauNDI CATATG 1 cut(s) 232
FblI GTMKAC 2 cut(s) 373, 913
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 2 cut(s) 177, 453
Fsp4HI GCNGC 1 cut(s) 506
FspBI CTAG 3 cut(s) 380, 461, 720
GluI GCNGC 1 cut(s) 506
GsuI CTGGAG 3 cut(s) 651, 865, 877
HaeIII GGCC 2 cut(s) 5, 313
HgaI GACGC 1 cut(s) 758
Hin1I GRCGYC 1 cut(s) 916
Hin1II CATG 3 cut(s) 173, 455, 656
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 2 cut(s) 14, 265
HphI GGTGA 2 cut(s) 629, 758
Hpy166II GTNNAC 6 cut(s) 134, 361, 374, 675, 908, 914
Hpy188I TCNGA 5 cut(s) 259, 298, 538, 571, 796
Hpy188III TCNNGA 3 cut(s) 380, 720, 738
Hpy8I GTNNAC 6 cut(s) 134, 361, 374, 675, 908, 914
Hpy99I CGWCG 1 cut(s) 921
HpyAV CCTTC 5 cut(s) 149, 258, 492, 726, 794
HpyCH4III ACNGT 2 cut(s) 131, 218
HpyCH4IV ACGT 4 cut(s) 419, 664, 910, 916
HpyCH4V TGCA 3 cut(s) 230, 272, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 774
HpyF3I CTNAG 1 cut(s) 828
HpySE526I ACGT 4 cut(s) 419, 664, 910, 916
Hsp92I GRCGYC 1 cut(s) 916
Hsp92II CATG 3 cut(s) 173, 455, 656
Kzo9I GATC 2 cut(s) 493, 540
LmnI GCTCC 3 cut(s) 406, 881, 896
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 4 cut(s) 155, 302, 418, 475
MaeI CTAG 3 cut(s) 380, 461, 720
MaeII ACGT 4 cut(s) 419, 664, 910, 916
MaeIII GTNAC 5 cut(s) 94, 340, 665, 746, 808
MalI GATC 2 cut(s) 495, 542
MboI GATC 2 cut(s) 493, 540
MboII GAAGA 7 cut(s) 74, 101, 311, 314, 400, 741, 768
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 149, 560
MlyI GAGTC 1 cut(s) 274
MseI TTAA 2 cut(s) 9, 74
MslI CAYNNNNRTG 2 cut(s) 129, 381
MspR9I CCNGG 1 cut(s) 883
MunI CAATTG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 883
MwoI GCNNNNNNNGC 1 cut(s) 774
NcoI CCATGG 1 cut(s) 652
NdeI CATATG 1 cut(s) 232
NdeII GATC 2 cut(s) 493, 540
NlaIII CATG 3 cut(s) 173, 455, 656
NlaIV GGNNCC 2 cut(s) 877, 892
NmeAIII GCCGAG 2 cut(s) 481, 794
NmuCI GTSAC 3 cut(s) 94, 746, 808
NspI RCATGY 1 cut(s) 455
NspV TTCGAA 1 cut(s) 788
OliI CACNNNNGTG 1 cut(s) 129
PceI AGGCCT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 2 cut(s) 907, 916
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 507
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 881
PspGI CCWGG 1 cut(s) 881
PspN4I GGNNCC 2 cut(s) 877, 892
PspPI GGNCC 1 cut(s) 675
PsrI GAACNNNNNNTAC 2 cut(s) 904, 936
PstI CTGCAG 1 cut(s) 274
RsaI GTAC 4 cut(s) 135, 418, 430, 868
RsaNI GTAC 4 cut(s) 134, 417, 429, 867
RseI CAYNNNNRTG 2 cut(s) 129, 381
SaqAI TTAA 2 cut(s) 9, 74
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 2 cut(s) 493, 540
Sau96I GGNCC 1 cut(s) 675
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 883
SduI GDGCHC 2 cut(s) 149, 560
SfaNI GCATC 4 cut(s) 155, 302, 418, 475
SfcI CTRYAG 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 788
SinI GGWCC 1 cut(s) 675
SmiMI CAYNNNNRTG 2 cut(s) 129, 381
SseBI AGGCCT 1 cut(s) 313
SspMI CTAG 3 cut(s) 380, 461, 720
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 881
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 2 cut(s) 131, 218
TaiI ACGT 4 cut(s) 422, 667, 913, 919
TaqI TCGA 1 cut(s) 788
TatI WGTACW 2 cut(s) 133, 866
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 9, 74
Tru9I TTAA 2 cut(s) 9, 74
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 3 cut(s) 94, 746, 808
TseI GCWGC 1 cut(s) 505
Tsp45I GTSAC 3 cut(s) 94, 746, 808
TspDTI ATGAA 4 cut(s) 36, 39, 554, 813
TspRI CASTG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 328
XapI RAATTY 3 cut(s) 715, 790, 821
XbaI TCTAGA 2 cut(s) 379, 719
XceI RCATGY 1 cut(s) 455
XmiI GTMKAC 2 cut(s) 373, 913
XspI CTAG 3 cut(s) 380, 461, 720
ZraI GACGTC 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.