Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8319573.1

Orthogroup ID

OG0001808

Physical Location & Seq

Genomic Coordinates Forward (+)

20 .. 943

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8319573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 896 bp

atggcctttgaagcttctaatggaagagggcttcagcccagtttattcaatgtggatgatatcgagttaaatacaaattgggaagatgtgacttgtcctatatgtttggatttccctcacaatggcgtactcctacagtgcacatcgcacaataatggatgccgtccttttgtctgtgacacaaatcacttgcactcaaattgtttggaccgtttcaaaaatgcaaatggtatgtcatctccttcaaaatctgatgctagtctgacaagtgacactgagccagtggcatcagaagacagctgcaagccaacttgcccattgtgtaggggtgaagtgactgggtgggttgttgttgataaggctcgtgttcatctcgatgtgaagaagcgttgttgcgaggagcaacgatgcacatttatgggtacatacttggaattgcaaaaacatgctgaactggagcaccctcattctcaaccatcaaaaattgatcctgctcggcagcttgattgggaaaatttccaacagtcttcggagatcatagatgttttgagcactatacattcggaagtccctcggggggttgttttaggagattatgtgattgaatatggtgatgatgagactggggatgagtttgaggacttccctggtgacgaacgtaactggtggacctcctgtatattgtatcaggtatttgataacttgaggaattccagaaatagaagaaggtcaagagttggtgacactagaagaggaggccgccgagcaagctatgatgcaaattctgatgacggttctgtgacatctgttgatttcacagacttcagggcagatgagattgatgatgagtttatgagttcaagtggctcctccagaggtggctcaagtcatcgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

298

Amino Acids

33.53

Weight (kDa)

4.82

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31410 AT4G31410 AT4G31410
fragaria_vesca	FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920
malus_domestica	MD08G1131200.v1.1 MD15G1108900.v1.1
prunus_persica	Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0304861
rosa_laevigata	RLG00000010944
rosa_multiflora	Rmu_co8319573.1_g000001 Rmu_ssc0000278.1_g000007
rosa_rugosa	Rorug06G0335700 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335900.1
rosa_samantha	Rh6AG447000 Rh6BG454600 Rh6CG460500 Rh6DG447500
rosa_wichuraiana	Rw6G038910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	3 cut(s)	514, 709, 781
AcuI	CTGAAG	2 cut(s)	17, 808
AfaI	GTAC	2 cut(s)	129, 424
AfiI	CCNNNNNNNGG	2 cut(s)	122, 577
AgsI	TTSAA	6 cut(s)	11, 49, 217, 246, 605, 861
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	4 cut(s)	14, 300, 502, 771
AluI	AGCT	4 cut(s)	14, 300, 502, 771
Alw21I	GWGCWC	3 cut(s)	143, 462, 554
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	2 cut(s)	3, 757
ApaLI	GTGCAC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	300, 499
ApoI	RAATTY	3 cut(s)	514, 709, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	2 cut(s)	208, 669
AsuHPI	GGTGA	4 cut(s)	341, 623, 662, 752
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	208, 669
BaeGI	GKGCMC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	300, 519
Bbv12I	GWGCWC	3 cut(s)	143, 462, 554
BbvI	GCAGC	2 cut(s)	287, 511
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	258, 747
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	301, 500, 760
BlsI	GCNGC	3 cut(s)	302, 501, 761
Bme1390I	CCNGG	1 cut(s)	648
Bme18I	GGWCC	2 cut(s)	208, 669
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	2 cut(s)	208, 669
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	1 cut(s)	648
BmrI	ACTGGG	3 cut(s)	33, 348, 633
BmsI	GCATC	5 cut(s)	149, 244, 296, 398, 766
BmuI	ACTGGG	3 cut(s)	33, 348, 633
BpiI	GAAGAC	2 cut(s)	300, 519
BpmI	CTGGAG	2 cut(s)	476, 856
BpuEI	CTTGAG	2 cut(s)	724, 868
BsaJI	CCNNGG	2 cut(s)	572, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 577
Bse1I	ACTGG	6 cut(s)	39, 281, 343, 459, 628, 668
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	572, 646
BseGI	GGATG	3 cut(s)	61, 164, 634
BseLI	CCNNNNNNNGG	2 cut(s)	122, 577
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	6 cut(s)	39, 281, 343, 459, 628, 668
BseRI	GAGGAG	3 cut(s)	413, 768, 859
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	287, 511
BshFI	GGCC	2 cut(s)	5, 759
BsiHKAI	GWGCWC	3 cut(s)	143, 462, 554
BsiHKCI	CYCGRG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	122, 577
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	5, 759
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	3 cut(s)	143, 462, 554
Bsp143I	GATC	2 cut(s)	487, 534
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	2 cut(s)	5, 759
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	868
BspPI	GGATC	1 cut(s)	482
BsrI	ACTGG	6 cut(s)	39, 281, 343, 459, 628, 668
BssECI	CCNNGG	2 cut(s)	572, 646
BssMI	GATC	2 cut(s)	487, 534
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	4 cut(s)	138, 212, 525, 794
Bst6I	CTCTTC	2 cut(s)	19, 745
BstC8I	GCNNGC	2 cut(s)	305, 769
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	61, 164, 634
BstKTI	GATC	2 cut(s)	490, 537
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	2 cut(s)	487, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 768
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	287, 511
BstV2I	GAAGAC	2 cut(s)	300, 519
BsuRI	GGCC	2 cut(s)	5, 759
BtgZI	GCGATG	2 cut(s)	129, 875
BtsCI	GGATG	3 cut(s)	61, 164, 634
BtsIMutI	CAGTG	3 cut(s)	143, 273, 288
Cac8I	GCNNGC	2 cut(s)	305, 769
Cfr13I	GGNCC	2 cut(s)	208, 669
Csp6I	GTAC	2 cut(s)	128, 423
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	2 cut(s)	128, 423
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	489, 536
DpnII	GATC	2 cut(s)	487, 534
Eam1104I	CTCTTC	2 cut(s)	19, 745
EarI	CTCTTC	2 cut(s)	19, 745
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	208, 669
Eco57I	CTGAAG	2 cut(s)	17, 808
Eco88I	CYCGRG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	646
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	1 cut(s)	449
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	301, 500, 760
FokI	GGATG	3 cut(s)	68, 171, 641
Fsp4HI	GCNGC	3 cut(s)	301, 500, 760
FspBI	CTAG	2 cut(s)	258, 747
GluI	GCNGC	3 cut(s)	301, 500, 760
GsuI	CTGGAG	2 cut(s)	476, 856
HaeIII	GGCC	2 cut(s)	5, 759
Hin1II	CATG	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	4 cut(s)	341, 623, 662, 752
Hpy166II	GTNNAC	2 cut(s)	141, 669
Hpy188I	TCNGA	6 cut(s)	253, 264, 292, 532, 565, 787
Hpy188III	TCNNGA	4 cut(s)	374, 714, 732, 873
Hpy8I	GTNNAC	2 cut(s)	141, 669
HpyAV	CCTTC	2 cut(s)	252, 720
HpyCH4III	ACNGT	4 cut(s)	138, 212, 525, 794
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	7 cut(s)	141, 193, 224, 303, 411, 439, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 768
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	487, 534
LmnI	GCTCC	3 cut(s)	400, 457, 872
Lsp1109I	GCAGC	2 cut(s)	287, 511
LweI	GCATC	5 cut(s)	149, 244, 296, 398, 766
MaeI	CTAG	2 cut(s)	258, 747
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	8 cut(s)	88, 176, 269, 334, 650, 659, 740, 799
MalI	GATC	2 cut(s)	489, 536
MboI	GATC	2 cut(s)	487, 534
MboII	GAAGA	7 cut(s)	36, 95, 305, 394, 519, 735, 762
MhlI	GDGCHC	3 cut(s)	143, 462, 554
MluCI	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
MmeI	TCCRAC	1 cut(s)	544
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	3 cut(s)	153, 375, 416
MspA1I	CMGCKG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	11, 768
NdeII	GATC	2 cut(s)	487, 534
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	1 cut(s)	868
NmeAIII	GCCGAG	2 cut(s)	475, 788
NmuCI	GTSAC	7 cut(s)	88, 176, 269, 334, 650, 740, 799
NspI	RCATGY	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	302, 501, 761
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	2 cut(s)	208, 669
PvuII	CAGCTG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	129, 424
RsaNI	GTAC	2 cut(s)	128, 423
RseI	CAYNNNNRTG	3 cut(s)	153, 375, 416
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	301, 500, 760
Sau3AI	GATC	2 cut(s)	487, 534
Sau96I	GGNCC	2 cut(s)	208, 669
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	3 cut(s)	143, 462, 554
SetI	ASST	9 cut(s)	16, 302, 504, 661, 674, 693, 731, 773, 880
SfaNI	GCATC	5 cut(s)	149, 244, 296, 398, 766
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	208, 669
SmiMI	CAYNNNNRTG	3 cut(s)	153, 375, 416
SmlI	CTYRAG	2 cut(s)	703, 883
SmoI	CTYRAG	2 cut(s)	703, 883
Sse9I	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	2 cut(s)	258, 747
StyD4I	CCNGG	1 cut(s)	646
TaaI	ACNGT	4 cut(s)	138, 212, 525, 794
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	2 cut(s)	63, 375
TasI	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
TauI	GCSGC	1 cut(s)	762
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	3 cut(s)	143, 280, 288
TseFI	GTSAC	7 cut(s)	88, 176, 269, 334, 650, 740, 799
TseI	GCWGC	2 cut(s)	300, 499
Tsp45I	GTSAC	7 cut(s)	88, 176, 269, 334, 650, 740, 799
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	3 cut(s)	143, 280, 288
VneI	GTGCAC	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	208, 669
XapI	RAATTY	3 cut(s)	514, 709, 781
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	2 cut(s)	258, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.