Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001808

Physical Location & Seq

Genomic Coordinates Reverse (-)

12383191 .. 12386607

Gene Structure 3417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1131200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCCTTGAAGCTTCTAATCAAAGAGAGCTTCAACCCAGTTCATTCAGTTTGGATGATATTGAGTTAAATATAAACTGGGAAGATGTAACTTGTCCTATATGTTTGGATTTCCCCCACAATGGTGTACTCCTTCAGTGCTCATCTTATGAGAAAGGGTGCCGTCCTTTTGTTTGCGACACAAACCACCTACACTCCAATTGTTTAGACCGCTTCAAGAGTGCATATGGTATGTCATCTCCTACAAAATCTGTTGTGAGTCCTGCAGAAAATACTGAGCCAAAGGCATCAGAAGACGATTGCAAGCCTACTTGTCCCTTGTGTAGGGGGGAAGTTAATGGGTGGGTTGTTGTTGACAAGGCTCGTGTACATCTGGATGTGAAAAAGCGTTGTTGTGAGGTGCATCAATGTAAATTTATGGGTTCGTATTTGGAATTACAAAAACATGCTCAGCTGGAGCACCCTCATTCTCGTCCTTCAAAGATTGATCCTGCTCGGCTGCTTGATTGGGAAAATTTCCAGCAGTCCTCTGAGATCATAGATGTTTTGAGCACTATACATTCAGAAGTCCCTCGTGGGGTGGTTTTAGGAGATTATGTGATTGAATATGGTGACGATGAGACTGGAGATGAGTTTGAGGACTTCCATGGGGATGAACGCAACTGGTGGACCTCCTGCATCTTATATCAGGTTTTTGATAACTTGAGGAATTCTAGAAACAGAAGAAGGTCAAGAGTTGCTGACACAAGAAGAGGAAATCGCCGAGCAAGTTATGATAATTCAAATTCTGATGAAGGTTCTGTGACATCTGTTGAATTCCCCGAGTATAGGGCAGATGAGACCGATGACGAGTTTATGAGTACAAGTGGCTTCTCCAGAGGTGGCTCTAGTCATCGCAGGTCTGCAATGTTCCTTATTCAATTTTTGTTTCTCGTAGACGTCGTTCTCGCTTCTATGACAATTAGGGCTCAAGTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

327

Amino Acids

37.18

Weight (kDa)

5.1

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1644	PF07800	28 - 184	3.5e-64	Protein of unknown function (DUF1644)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31410 AT4G31410 AT4G31410
fragaria_vesca	FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920 FvH4_2g36920
malus_domestica	MD08G1131200.v1.1 MD15G1108900.v1.1
prunus_persica	Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1 Prupe.1G461100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0304861
rosa_laevigata	RLG00000010944
rosa_multiflora	Rmu_co8319573.1_g000001 Rmu_ssc0000278.1_g000007
rosa_rugosa	Rorug06G0335700 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335800 Rorug06G0335900.1
rosa_samantha	Rh6AG447000 Rh6BG454600 Rh6CG460500 Rh6DG447500
rosa_wichuraiana	Rw6G038910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	942
Acc36I	ACCTGC	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	936
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	5 cut(s)	413, 514, 709, 784, 815
AcuI	CTGAAG	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	939
AfaI	GTAC	3 cut(s)	129, 369, 862
AfiI	CCNNNNNNNGG	4 cut(s)	122, 324, 577, 828
AgsI	TTSAA	8 cut(s)	11, 35, 217, 480, 605, 783, 815, 920
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	14, 31, 454
AluI	AGCT	3 cut(s)	14, 31, 454
Alw21I	GWGCWC	3 cut(s)	143, 462, 554
Alw26I	GTCTC	2 cut(s)	614, 833
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	5 cut(s)	413, 514, 709, 784, 815
AspS9I	GGNCC	2 cut(s)	4, 669
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	970
BauI	CACGAG	2 cut(s)	363, 573
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	3 cut(s)	143, 462, 554
BbvI	GCAGC	1 cut(s)	486
BceAI	ACGGC	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	614, 833
BfaI	CTAG	2 cut(s)	714, 888
BfmI	CTRYAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	888
BisI	GCNGC	1 cut(s)	500
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	4, 669
BmiI	GGNNCC	1 cut(s)	161
BmrI	ACTGGG	2 cut(s)	33, 88
BmsI	GCATC	3 cut(s)	296, 412, 687
BmuI	ACTGGG	2 cut(s)	33, 88
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	3 cut(s)	476, 645, 859
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	724, 954
BsaHI	GRCGYC	1 cut(s)	939
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	1 cut(s)	646
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 582, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 324, 577, 828
Bse1I	ACTGG	4 cut(s)	39, 83, 628, 668
Bse3DI	GCAATG	1 cut(s)	912
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	3 cut(s)	61, 382, 658
BseLI	CCNNNNNNNGG	4 cut(s)	122, 324, 577, 828
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	3 cut(s)	267, 464, 522
BseNI	ACTGG	4 cut(s)	39, 83, 628, 668
BseXI	GCAGC	1 cut(s)	486
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	3 cut(s)	143, 462, 554
BsiHKCI	CYCGRG	1 cut(s)	821
BslFI	GGGAC	2 cut(s)	300, 554
BslI	CCNNNNNNNGG	4 cut(s)	122, 324, 577, 828
BsmAI	GTCTC	2 cut(s)	614, 833
BsmFI	GGGAC	2 cut(s)	300, 554
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	833
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	4 cut(s)	143, 462, 554, 970
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	487, 534
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	268, 463, 523
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	888
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	39, 83, 628, 668
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	2 cut(s)	487, 534
BssNI	GRCGYC	1 cut(s)	939
BssSI	CACGAG	2 cut(s)	363, 573
BssT1I	CCWWGG	1 cut(s)	646
Bst2BI	CACGAG	2 cut(s)	363, 573
Bst6I	CTCTTC	1 cut(s)	745
BstACI	GRCGYC	1 cut(s)	939
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	276, 450, 531
BstDSI	CCRYGG	1 cut(s)	646
BstENI	CCTNNNNNAGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	61, 382, 658
BstKTI	GATC	2 cut(s)	490, 537
BstMAI	GTCTC	2 cut(s)	614, 833
BstMBI	GATC	2 cut(s)	487, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	486
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	646
BtgZI	GCGATG	1 cut(s)	878
BtsCI	GGATG	3 cut(s)	61, 382, 658
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	888
Cac8I	GCNNGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	4, 669
Csp6I	GTAC	3 cut(s)	128, 368, 861
CviAII	CATG	2 cut(s)	446, 647
CviQI	GTAC	3 cut(s)	128, 368, 861
DdeI	CTNAG	3 cut(s)	276, 450, 531
DpnI	GATC	2 cut(s)	489, 536
DpnII	GATC	2 cut(s)	487, 534
Eam1104I	CTCTTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	970
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	821
EcoNI	CCTNNNNNAGG	1 cut(s)	322
EcoRI	GAATTC	2 cut(s)	709, 815
EcoT14I	CCWWGG	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	2 cut(s)	449, 650
FaqI	GGGAC	2 cut(s)	300, 554
FatI	CATG	2 cut(s)	445, 646
FauNDI	CATATG	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	3 cut(s)	68, 389, 665
FriOI	GRGCYC	1 cut(s)	970
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	2 cut(s)	714, 888
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	3 cut(s)	476, 645, 859
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	939
Hin1II	CATG	2 cut(s)	449, 650
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	1 cut(s)	259
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	5 cut(s)	128, 355, 368, 669, 937
Hpy188I	TCNGA	4 cut(s)	292, 532, 565, 790
Hpy188III	TCNNGA	5 cut(s)	217, 374, 714, 732, 876
Hpy8I	GTNNAC	5 cut(s)	128, 355, 368, 669, 937
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	4 cut(s)	143, 486, 720, 788
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	6 cut(s)	224, 266, 303, 403, 678, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	276, 450, 531
HpySE526I	ACGT	1 cut(s)	939
Hsp92I	GRCGYC	1 cut(s)	939
Hsp92II	CATG	2 cut(s)	449, 650
Kzo9I	GATC	2 cut(s)	487, 534
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	3 cut(s)	296, 412, 687
MaeI	CTAG	2 cut(s)	714, 888
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	3 cut(s)	88, 611, 802
MalI	GATC	2 cut(s)	489, 536
MboI	GATC	2 cut(s)	487, 534
MboII	GAAGA	4 cut(s)	95, 305, 735, 762
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	4 cut(s)	143, 462, 554, 970
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	9 cut(s)	391, 474, 538, 582, 631, 682, 699, 746, 872
MseI	TTAA	2 cut(s)	68, 336
MslI	CAYNNNNRTG	3 cut(s)	123, 375, 651
MspA1I	CMGCKG	1 cut(s)	454
MunI	CAATTG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	646
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	2 cut(s)	487, 534
NlaIII	CATG	2 cut(s)	449, 650
NlaIV	GGNNCC	1 cut(s)	161
NmeAIII	GCCGAG	2 cut(s)	475, 788
NmuCI	GTSAC	2 cut(s)	611, 802
NspI	RCATGY	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	939
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	4, 669
PsrI	GAACNNNNNNTAC	2 cut(s)	927, 959
PstI	CTGCAG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	3 cut(s)	129, 369, 862
RsaNI	GTAC	3 cut(s)	128, 368, 861
RseI	CAYNNNNRTG	3 cut(s)	123, 375, 651
SaqAI	TTAA	2 cut(s)	68, 336
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	2 cut(s)	487, 534
Sau96I	GGNCC	2 cut(s)	4, 669
SchI	GAGTC	1 cut(s)	268
SduI	GDGCHC	4 cut(s)	143, 462, 554, 970
SfaNI	GCATC	3 cut(s)	296, 412, 687
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	669
SmiMI	CAYNNNNRTG	3 cut(s)	123, 375, 651
SmlI	CTYRAG	2 cut(s)	703, 969
SmoI	CTYRAG	2 cut(s)	703, 969
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	714, 888
StyI	CCWWGG	1 cut(s)	646
TaiI	ACGT	1 cut(s)	942
TaqII	GACCGA	1 cut(s)	857
TatI	WGTACW	3 cut(s)	127, 367, 860
Tru1I	TTAA	2 cut(s)	68, 336
Tru9I	TTAA	2 cut(s)	68, 336
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	2 cut(s)	611, 802
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	2 cut(s)	611, 802
TspDTI	ATGAA	3 cut(s)	33, 669, 807
TspRI	CASTG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	669
XagI	CCTNNNNNAGG	1 cut(s)	322
XapI	RAATTY	5 cut(s)	413, 514, 709, 784, 815
XbaI	TCTAGA	1 cut(s)	713
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	936
XspI	CTAG	2 cut(s)	714, 888
ZraI	GACGTC	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.