Rh6BG454600

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001808
Physical Location & Seq
Reverse (-)
66750070 .. 66753776
3707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG454600.1

Sequence Viewer

Length: 936 bp
ATGGCCTTTGAAGCTTCTAATGGAAGAGGGCTTCAGCCCAGTTTATTCAATGTGGATGATATCGAGTTAAATACAAATTGGGAAGATGTGACTTGTCCTATATGTTTGGATTTCCCTCACAATGGCGTACTCCTACAGTGCACATCACACAATAATGGATGCCGTCCTTTTGTCTGTGACACAAATCACTTGCACTCAAATTGTTTGGACCGTTTCAAAAATGCAAATGGTATGTCATCTCCTTCAAAATCTGATGCTAGTCCGACAAGTGACACTGAGCCAGTGGCATCAGAAGACAACTGCAAGCCAACTTGCCCATTGTGTAGGGGTGAAGTGACTGGGTGGGTTGTTGTCGGTAAGGCTCGTGCTCATCTCGATGTGAAGAAGCGTTGTTGCGAGGAGCAACGATGCACATTTATGGGTACATACTTGGAATTGCAAAAACATGCTGAACTGGAGCACCCTCATTCTCAACCATCAAAAATTGATCCTGCTCGGCAGCTTGATTGGGAAAATTTCCAACAGTCTTCGGAGATCATAGATGTTTTGAGCACTATACATTCGGAAGTCCCTCGGGGGGTTGTTTTAGGAGATTATGTGATTGAATATGGTGATGATGAGACTGGGGATGAGTTCGAGGACTTCCCTGGCGACGAACGTAACTGGTGGACCTCCTGTATATTGTATCAGGTATTTGATAACTTGAGGAATTCCAGAAATAGAAGAAGGTCAAGAGTTGGTGACACTAGAAGAGGAGGCCGCCGAGCAAGCTATGATGCAAATTCTGATGACGGTTCTGTGACATCTGTTGACTTCACAGACTTCAGGGCAGATGAGATTGATGATGAGTTTATGAGTTCAAGTGGCTCCTCCAGGGGTGGCTCAAGTCATCGCAGGTTTGTAGTCTCTTTTTCATTTCTGTATGGGATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

311

Amino Acids

34.97

Weight (kDa)

4.92

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 28 - 184 1.9e-63 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 885
AciI CCGC 1 cut(s) 760
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 3 cut(s) 514, 709, 781
AcuI CTGAAG 2 cut(s) 17, 808
AfaI GTAC 2 cut(s) 129, 424
AfiI CCNNNNNNNGG 2 cut(s) 122, 577
AgsI TTSAA 6 cut(s) 11, 49, 217, 246, 605, 861
AjnI CCWGG 2 cut(s) 646, 872
AluBI AGCT 3 cut(s) 14, 502, 771
AluI AGCT 3 cut(s) 14, 502, 771
Alw21I GWGCWC 4 cut(s) 143, 370, 462, 554
Alw26I GTCTC 2 cut(s) 614, 910
Alw44I GTGCAC 1 cut(s) 139
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 2 cut(s) 3, 757
ApaLI GTGCAC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 499
ApoI RAATTY 3 cut(s) 514, 709, 781
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspS9I GGNCC 2 cut(s) 208, 669
AsuHPI GGTGA 3 cut(s) 341, 623, 752
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 2 cut(s) 208, 669
BaeGI GKGCMC 1 cut(s) 143
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 300, 519
Bbv12I GWGCWC 4 cut(s) 143, 370, 462, 554
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 648, 874
BcoDI GTCTC 2 cut(s) 614, 910
BfaI CTAG 2 cut(s) 258, 747
BfmI CTRYAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 885
BisI GCNGC 2 cut(s) 500, 760
BlsI GCNGC 2 cut(s) 501, 761
Bme1390I CCNGG 2 cut(s) 648, 874
Bme18I GGWCC 2 cut(s) 208, 669
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 208, 669
BmiI GGNNCC 1 cut(s) 868
BmrFI CCNGG 2 cut(s) 648, 874
BmrI ACTGGG 3 cut(s) 33, 348, 633
BmsI GCATC 5 cut(s) 149, 244, 296, 398, 766
BmuI ACTGGG 3 cut(s) 33, 348, 633
BpiI GAAGAC 2 cut(s) 300, 519
BpmI CTGGAG 2 cut(s) 476, 856
BpuEI CTTGAG 2 cut(s) 724, 868
BsaJI CCNNGG 3 cut(s) 572, 646, 873
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 577
Bse1I ACTGG 6 cut(s) 39, 281, 343, 459, 628, 668
BseBI CCWGG 2 cut(s) 648, 874
BseDI CCNNGG 3 cut(s) 572, 646, 873
BseGI GGATG 3 cut(s) 61, 164, 634
BseLI CCNNNNNNNGG 2 cut(s) 122, 577
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 6 cut(s) 39, 281, 343, 459, 628, 668
BseRI GAGGAG 3 cut(s) 413, 768, 859
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 511
BshFI GGCC 2 cut(s) 5, 759
BsiHKAI GWGCWC 4 cut(s) 143, 370, 462, 554
BsiHKCI CYCGRG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 122, 577
BsmAI GTCTC 2 cut(s) 614, 910
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 2 cut(s) 5, 759
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 4 cut(s) 143, 370, 462, 554
Bsp143I GATC 2 cut(s) 487, 534
BspACI CCGC 1 cut(s) 760
BspANI GGCC 2 cut(s) 5, 759
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 868
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 1 cut(s) 482
BsrI ACTGG 6 cut(s) 39, 281, 343, 459, 628, 668
BssECI CCNNGG 3 cut(s) 572, 646, 873
BssMI GATC 2 cut(s) 487, 534
BssSI CACGAG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 648, 874
Bst4CI ACNGT 4 cut(s) 138, 212, 525, 794
Bst6I CTCTTC 2 cut(s) 19, 745
BstC8I GCNNGC 2 cut(s) 305, 769
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 61, 164, 634
BstKTI GATC 2 cut(s) 490, 537
BstMAI GTCTC 2 cut(s) 614, 910
BstMBI GATC 2 cut(s) 487, 534
BstMWI GCNNNNNNNGC 2 cut(s) 11, 768
BstNI CCWGG 2 cut(s) 648, 874
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 646, 872
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 2 cut(s) 300, 519
BsuRI GGCC 2 cut(s) 5, 759
BtgZI GCGATG 1 cut(s) 875
BtsCI GGATG 3 cut(s) 61, 164, 634
BtsIMutI CAGTG 3 cut(s) 143, 273, 288
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 2 cut(s) 305, 769
Cfr13I GGNCC 2 cut(s) 208, 669
Csp6I GTAC 2 cut(s) 128, 423
CviAII CATG 1 cut(s) 446
CviQI GTAC 2 cut(s) 128, 423
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 489, 536
DpnII GATC 2 cut(s) 487, 534
Eam1104I CTCTTC 2 cut(s) 19, 745
EarI CTCTTC 2 cut(s) 19, 745
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 208, 669
Eco57I CTGAAG 2 cut(s) 17, 808
Eco88I CYCGRG 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 2 cut(s) 646, 872
EcoRV GATATC 1 cut(s) 61
FaeI CATG 1 cut(s) 449
FaqI GGGAC 1 cut(s) 554
FatI CATG 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 500, 760
FokI GGATG 3 cut(s) 68, 171, 641
Fsp4HI GCNGC 2 cut(s) 500, 760
FspBI CTAG 2 cut(s) 258, 747
GluI GCNGC 2 cut(s) 500, 760
GsuI CTGGAG 2 cut(s) 476, 856
HaeIII GGCC 2 cut(s) 5, 759
Hin1II CATG 1 cut(s) 449
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 1 cut(s) 928
HphI GGTGA 3 cut(s) 341, 623, 752
Hpy166II GTNNAC 3 cut(s) 141, 669, 811
Hpy188I TCNGA 6 cut(s) 253, 264, 292, 532, 565, 787
Hpy188III TCNNGA 3 cut(s) 374, 714, 732
Hpy8I GTNNAC 3 cut(s) 141, 669, 811
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 2 cut(s) 252, 720
HpyCH4III ACNGT 4 cut(s) 138, 212, 525, 794
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 7 cut(s) 141, 193, 224, 303, 411, 439, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 768
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 1 cut(s) 449
Kzo9I GATC 2 cut(s) 487, 534
LmnI GCTCC 3 cut(s) 400, 457, 872
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 5 cut(s) 149, 244, 296, 398, 766
MaeI CTAG 2 cut(s) 258, 747
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 7 cut(s) 88, 176, 269, 334, 659, 740, 799
MalI GATC 2 cut(s) 489, 536
MboI GATC 2 cut(s) 487, 534
MboII GAAGA 7 cut(s) 36, 95, 305, 394, 519, 735, 762
MhlI GDGCHC 4 cut(s) 143, 370, 462, 554
MluCI AATT 7 cut(s) 76, 199, 434, 483, 514, 709, 781
MmeI TCCRAC 2 cut(s) 287, 544
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 3 cut(s) 153, 375, 416
MspR9I CCNGG 2 cut(s) 648, 874
MvaI CCWGG 2 cut(s) 648, 874
MwoI GCNNNNNNNGC 2 cut(s) 11, 768
NdeII GATC 2 cut(s) 487, 534
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 868
NmeAIII GCCGAG 2 cut(s) 475, 788
NmuCI GTSAC 6 cut(s) 88, 176, 269, 334, 740, 799
NspI RCATGY 1 cut(s) 449
PfeI GAWTC 1 cut(s) 928
PkrI GCNGC 2 cut(s) 501, 761
Psp6I CCWGG 2 cut(s) 646, 872
PspGI CCWGG 2 cut(s) 646, 872
PspN4I GGNNCC 1 cut(s) 868
PspPI GGNCC 2 cut(s) 208, 669
RsaI GTAC 2 cut(s) 129, 424
RsaNI GTAC 2 cut(s) 128, 423
RseI CAYNNNNRTG 3 cut(s) 153, 375, 416
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 2 cut(s) 500, 760
Sau3AI GATC 2 cut(s) 487, 534
Sau96I GGNCC 2 cut(s) 208, 669
ScrFI CCNGG 2 cut(s) 648, 874
SduI GDGCHC 4 cut(s) 143, 370, 462, 554
SetI ASST 8 cut(s) 16, 504, 661, 674, 693, 731, 773, 899
SfaNI GCATC 5 cut(s) 149, 244, 296, 398, 766
SfcI CTRYAG 1 cut(s) 134
SinI GGWCC 2 cut(s) 208, 669
SmiMI CAYNNNNRTG 3 cut(s) 153, 375, 416
SmlI CTYRAG 2 cut(s) 703, 883
SmoI CTYRAG 2 cut(s) 703, 883
Sse9I AATT 7 cut(s) 76, 199, 434, 483, 514, 709, 781
SsiI CCGC 1 cut(s) 760
SspMI CTAG 2 cut(s) 258, 747
StyD4I CCNGG 2 cut(s) 646, 872
TaaI ACNGT 4 cut(s) 138, 212, 525, 794
TaiI ACGT 1 cut(s) 661
TaqI TCGA 3 cut(s) 63, 375, 636
TasI AATT 7 cut(s) 76, 199, 434, 483, 514, 709, 781
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 3 cut(s) 143, 280, 288
TseFI GTSAC 6 cut(s) 88, 176, 269, 334, 740, 799
TseI GCWGC 1 cut(s) 499
Tsp45I GTSAC 6 cut(s) 88, 176, 269, 334, 740, 799
TspDTI ATGAA 1 cut(s) 903
TspRI CASTG 3 cut(s) 143, 280, 288
VneI GTGCAC 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 208, 669
XapI RAATTY 3 cut(s) 514, 709, 781
XceI RCATGY 1 cut(s) 449
XspI CTAG 2 cut(s) 258, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.