AT4G31460

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011937
Physical Location & Seq
Reverse (-)
15259469 .. 15261360
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31460.1

Sequence Viewer

Length: 639 bp
ATGGCGTTTAGAGGGAAGGAGATGATGAAGAAGCTGGTAAAGAAAGTTGGAGCGGAGAATATCACGCCGGAGCTCAAGGAGAAGCTCAAGGCTTGTGTTCCTGATACCAAAGTCGTCATGGGCAGAGCCAAACGCGGTCTCTACGCCGGCCGCCACATCCAGTACGGAAACCGTGTCAGTGAAGACGGTGGAAACAAGTCAAGAAGATGTTGGAAACCGAATGTCCAGGAGAAGCGATTGTTCAGCTACATATTCGACAGTCACATTAAAGTCAAAGTCACAACACACGCTCTTCGCTGCATCGACAAAGCAGGAGGAATAGACGAGTACCTGCTGAAAACACCATACCAAAAGATGGACACAGAGATGGGTCTTTACTGGAAAACCAAAGTAGAGGCAAGATATGCAGAGCTGGGTCAAATGGAAGTAGCCTTCTTCAATCCAGAGGATGAAGCCAAGTTGGAACAAGGATTCAAAGACTTGAATATAGCTAAGAAAGATGCTCGTCGGGAAGCTAGAAGGACGTTTCGAAAGAAAGGTGGAGGAAACAAAGGTGATGAAGAAGCTTCTATTGAAGGTGGTGGAGGGTCAGAGTCACACCAAGAAGATGATAATGGGTGGTTAGAAGCTAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

212

Amino Acids

24.07

Weight (kDa)

9.39

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L28 PF00830 45 - 104 7.1e-20 Ribosomal L28 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 355
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 53, 135, 151
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 2 cut(s) 164, 329
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 4 cut(s) 439, 475, 484, 575
AjnI CCWGG 1 cut(s) 225
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 566
AsuII TTCGAA 1 cut(s) 529
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 349, 361
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 339
BisI GCNGC 2 cut(s) 151, 298
BlsI GCNGC 2 cut(s) 152, 299
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 309, 490
BpiI GAAGAC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 2 cut(s) 59, 71
BsaI GGTCTC 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 160, 383
BseBI CCWGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 156, 454
BseLI CCNNNNNNNGG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 160, 383
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 2 cut(s) 68, 147
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 75
BspACI CCGC 3 cut(s) 53, 135, 151
BspANI GGCC 1 cut(s) 150
BspFNI CGCG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 339
BspQI GCTCTTC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 160, 383
BssAI RCCGGY 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 173, 188, 260
Bst6I CTCTTC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 492, 636
BstF5I GGATG 2 cut(s) 156, 454
BstFNI CGCG 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 143
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 189
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 156, 454
BtsIMutI CAGTG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 146
Csp6I GTAC 2 cut(s) 163, 328
CviAII CATG 1 cut(s) 118
CviQI GTAC 2 cut(s) 163, 328
DdeI CTNAG 2 cut(s) 492, 636
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 143
Eco52I CGGCCG 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 1 cut(s) 121
FaiI YATR 5 cut(s) 119, 251, 346, 405, 488
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 151, 298
FokI GGATG 2 cut(s) 143, 461
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 151, 298
FspBI CTAG 1 cut(s) 516
GluI GCNGC 2 cut(s) 151, 298
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 68, 147
Hin1II CATG 1 cut(s) 121
HindIII AAGCTT 2 cut(s) 564, 633
HinfI GANTC 2 cut(s) 471, 593
HpaII CCGG 2 cut(s) 68, 147
HphI GGTGA 1 cut(s) 566
Hpy188I TCNGA 1 cut(s) 592
Hpy188III TCNNGA 4 cut(s) 101, 201, 443, 509
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 4 cut(s) 10, 442, 513, 569
HpyCH4III ACNGT 3 cut(s) 173, 188, 260
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 2 cut(s) 300, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 2 cut(s) 492, 636
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 1 cut(s) 121
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 50, 70
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 2 cut(s) 309, 490
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 260, 277, 594
MbiI CCGCTC 1 cut(s) 53
MboII GAAGA 7 cut(s) 40, 194, 216, 284, 427, 572, 617
MhlI GDGCHC 1 cut(s) 75
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 3 cut(s) 28, 191, 441
MnlI CCTC 6 cut(s) 5, 308, 388, 439, 536, 578
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 2 cut(s) 68, 147
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 404
NaeI GCCGGC 1 cut(s) 148
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 260, 277, 594
NspV TTCGAA 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 471
PflMI CCANNNNNTGG 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 2 cut(s) 152, 299
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 225
RsaI GTAC 2 cut(s) 164, 329
RsaNI GTAC 2 cut(s) 163, 328
RseI CAYNNNNRTG 1 cut(s) 365
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 151, 298
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 2 cut(s) 309, 490
SfuI TTCGAA 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 74, 86
SmoI CTYRAG 2 cut(s) 74, 86
SsiI CCGC 3 cut(s) 53, 135, 151
SspMI CTAG 1 cut(s) 516
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 173, 188, 260
TaiI ACGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 255, 303, 529
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 1 cut(s) 471
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 3 cut(s) 260, 277, 594
TseI GCWGC 1 cut(s) 297
Tsp45I GTSAC 3 cut(s) 260, 277, 594
TspDTI ATGAA 3 cut(s) 41, 465, 573
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.