MD08G1128100.v1.1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011937
Physical Location & Seq
Forward (+)
12026453 .. 12028354
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1128100.v1.1.491

Sequence Viewer

Length: 717 bp
ATGGCGATGGTGAGGGGGAAGGAGACAATCAAGAGCGTGATGAAGAAGTTCGGCGACAAAACCCTAACGCCGCGGCTGAAGGAGGAGCTGAAGAAGAAGGGCACCATGGGAGGGAAAACCCTACCCACCCGATTGAGAGAGGAGCTCAAGAAGAAAGGCATGCCCGATTCGAATATCATCATGGGTCGGGCCAAGCGCGGCATCTACGCCGGCCGCCACATCCAGTTCGGCAACCAAATCAGCGAAGACGGCGGCAACAAATCAAGGAGGACATGGAAGCCAAATGTGCAGGAGAAGCGGCTCTTCAGTTACATCCTAGACCGCCACATACGTGTCAAAGTCACCACCCATGCTCTCCGTTGCATAGACAAGGCAGGTGGGATTGATGAGTATTTTCTGAAAACACCTTACCAGAAGATGGATACGGAAATGGGATTTGTCTGGAAAGCCAGAATTGAAAAATTATATGAAGATGTTGGGCACAAGCAGGTTGCTTTTAATAAACCTGAAGCTGAAGCCGAAGCCAACTTGGAACAAGGATTCAAAAACCTAAAAATAGACGAAAGGGAAGTCAAGAGACAGATGTATGGTTGGTCGAAGAAACTAAAACAGATCGAGGAAGGAACTGACAAACAAGTAGCTGATGCCGTAGATGCAAAGGTCGATGCAGGAAGCTCTCATGTTGATGTTCCCGAGCAATTGGTCGCAAACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

239

Amino Acids

27.21

Weight (kDa)

9.7

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L28 PF00830 66 - 125 1.8e-22 Ribosomal L28 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 2 cut(s) 365, 478
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 2 cut(s) 73, 198
AciI CCGC 7 cut(s) 71, 73, 198, 214, 252, 298, 322
AcoI YGGCCR 1 cut(s) 211
AcuI CTGAAG 5 cut(s) 98, 110, 289, 528, 534
AfiI CCNNNNNNNGG 2 cut(s) 111, 418
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 2 cut(s) 458, 544
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 5 cut(s) 88, 145, 512, 641, 675
AluI AGCT 5 cut(s) 88, 145, 512, 641, 675
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 17, 571
Ama87I CYCGRG 1 cut(s) 692
AoxI GGCC 2 cut(s) 189, 211
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 22, 334
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 692
BaeGI GKGCMC 2 cut(s) 104, 483
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 1 cut(s) 412
BceAI ACGGC 2 cut(s) 265, 632
BciVI GTATCC 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 17, 571
BfaI CTAG 1 cut(s) 317
BfuAI ACCTGC 2 cut(s) 365, 478
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
BlsI GCNGC 6 cut(s) 72, 75, 200, 215, 254, 300
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 4 cut(s) 210, 634, 643, 655
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 71, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 418
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 71, 105
BseGI GGATG 2 cut(s) 219, 312
BseLI CCNNNNNNNGG 2 cut(s) 111, 418
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 98, 155
BseSI GKGCMC 2 cut(s) 104, 483
BseX3I CGGCCG 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 2 cut(s) 73, 198
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 191, 213
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 111, 418
BsmAI GTCTC 2 cut(s) 17, 571
BsnI GGCC 2 cut(s) 191, 213
BsoBI CYCGRG 1 cut(s) 692
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 104, 147, 483
Bsp143I GATC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 7 cut(s) 71, 73, 198, 214, 252, 298, 322
BspANI GGCC 2 cut(s) 191, 213
BspFNI CGCG 2 cut(s) 73, 198
BspLI GGNNCC 1 cut(s) 103
BspMI ACCTGC 2 cut(s) 365, 478
BspQI GCTCTTC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 71, 105
BssMI GATC 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 161, 211
BstDSI CCRYGG 2 cut(s) 71, 105
BstF5I GGATG 2 cut(s) 219, 312
BstFNI CGCG 2 cut(s) 73, 198
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 1 cut(s) 615
BstMAI GTCTC 2 cut(s) 17, 571
BstMBI GATC 1 cut(s) 612
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 4 cut(s) 249, 286, 295, 653
BstNSI RCATGY 1 cut(s) 163
BstSLI GKGCMC 2 cut(s) 104, 483
BstUI CGCG 2 cut(s) 73, 198
BstV2I GAAGAC 1 cut(s) 252
BstZI CGGCCG 1 cut(s) 211
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 191, 213
BtgI CCRYGG 2 cut(s) 71, 105
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 219, 312
BveI ACCTGC 2 cut(s) 365, 478
Cac8I GCNNGC 2 cut(s) 161, 211
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 189
Cfr42I CCGCGG 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 6 cut(s) 106, 160, 181, 273, 350, 680
DpnI GATC 1 cut(s) 614
DpnII GATC 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 5 cut(s) 98, 110, 289, 528, 534
Eco88I CYCGRG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 6 cut(s) 109, 163, 184, 276, 353, 683
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 6 cut(s) 105, 159, 180, 272, 349, 679
Fnu4HI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
FokI GGATG 2 cut(s) 206, 299
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 197
GluI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
HaeIII GGCC 2 cut(s) 191, 213
HapII CCGG 1 cut(s) 210
HhaI GCGC 1 cut(s) 198
Hin1II CATG 6 cut(s) 109, 163, 184, 276, 353, 683
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 2 cut(s) 167, 540
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 22, 334
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 6 cut(s) 31, 148, 442, 574, 692, 714
HpyAV CCTTC 4 cut(s) 13, 73, 91, 614
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 289, 363, 656, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 286, 295, 653
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 6 cut(s) 109, 163, 184, 276, 353, 683
HspAI GCGC 1 cut(s) 196
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 612
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 2 cut(s) 85, 142
LweI GCATC 4 cut(s) 210, 634, 643, 655
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 308, 340
MalI GATC 1 cut(s) 614
MboI GATC 1 cut(s) 612
MboII GAAGA 9 cut(s) 55, 103, 106, 163, 257, 295, 427, 482, 610
MfeI CAATTG 1 cut(s) 698
MhlI GDGCHC 3 cut(s) 104, 147, 483
MluCI AATT 3 cut(s) 453, 461, 698
MnlI CCTC 6 cut(s) 6, 76, 104, 133, 261, 610
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 2 cut(s) 330, 684
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 698
MvnI CGCG 2 cut(s) 73, 198
MwoI GCNNNNNNNGC 4 cut(s) 249, 286, 295, 653
NaeI GCCGGC 1 cut(s) 211
NcoI CCATGG 1 cut(s) 105
NdeII GATC 1 cut(s) 612
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 6 cut(s) 109, 163, 184, 276, 353, 683
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 163
NspV TTCGAA 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 330
PaeI GCATGC 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 308
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 167, 540
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 6 cut(s) 72, 75, 200, 215, 254, 300
Ppu21I YACGTR 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 330, 684
SacI GAGCTC 1 cut(s) 147
SacII CCGCGG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 6 cut(s) 71, 74, 199, 214, 253, 299
Sau3AI GATC 1 cut(s) 612
Sau96I GGNCC 1 cut(s) 189
SduI GDGCHC 3 cut(s) 104, 147, 483
SfaNI GCATC 4 cut(s) 210, 634, 643, 655
Sfr303I CCGCGG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 330, 684
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SphI GCATGC 1 cut(s) 163
Sse9I AATT 3 cut(s) 453, 461, 698
SsiI CCGC 7 cut(s) 71, 73, 198, 214, 252, 298, 322
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 147
StyI CCWWGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 334
TaqI TCGA 4 cut(s) 170, 596, 615, 663
TasI AATT 3 cut(s) 453, 461, 698
TauI GCSGC 6 cut(s) 73, 76, 201, 216, 255, 301
TfiI GAWTC 2 cut(s) 167, 540
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 56, 483
TspGWI ACGGA 2 cut(s) 347, 440
Van91I CCANNNNNTGG 1 cut(s) 418
XceI RCATGY 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.