Prupe.1G459900_v2.0.a1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011937
Physical Location & Seq
Forward (+)
38482638 .. 38484754
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G459900.1

Sequence Viewer

Length: 708 bp
ATGGCGCTCAAAGGAAAGGAGACGATCAAGAGCATGATGAGGAAATTCGGAGACAAAGCCCTAACTCCGCGACTGAAGGAGGAGGTGAAGAAGAAAGGCATAATGGGAGACAAAACCCTACCTCCGCGATTGAGAGAGGAGCTCAAGAAGCAAGGCGTACCCGACTCCAAAATCATTATGGGTCGGGCCAAACGTGGCATCTACGCTGGCCGCCACATCCAGTTTGGCAATCAAATCAGTGAAGACGGTGGCAACAAGTCAAGGAGGACATGGAAGCCAAATGTGCAGGAGAAGCGTCTCTTCAGTTACATCCTTGACCGTCACATTCGGGTGAAAGTCACCACCCATGCTCTCCGTTGCATAGACAAAGCAGGTGGGATTGATGAGTACTTTCTGAAAACTCCTTACCAGAGGATGGATACAGAAATGGGTCTCGTTTGGAAAGCCAAAATTGAAAAGCTTTATGAAGAGGTTCGGCAGACACCGGTTGCGTTAATTAAACCTGAAGCTGAAGCCAATTTGGAACAGAAATTCAAACAACTAAAACTAGACGAGAGGGACGTCAGGAGAGAGATGTACGGTTGGTCAAACAAACTAAAACAGATTGAGGAAGGAGCTGACAACCAAGTAGCTGATGAGGAAGGTGCAAGGATTGGAGAACAAAGCTCTCATGTTGATGTTCCGGAGCAGTTGGTTGCAAACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

236

Amino Acids

27.09

Weight (kDa)

9.61

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
AatII GACGTC 1 cut(s) 564
Acc36I ACCTGC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 415
AccII CGCG 2 cut(s) 70, 127
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 3 cut(s) 68, 125, 211
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 2 cut(s) 44, 530
AcuI CTGAAG 4 cut(s) 95, 286, 525, 531
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 3 cut(s) 159, 389, 578
AfiI CCNNNNNNNGG 1 cut(s) 415
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 2 cut(s) 455, 535
AluBI AGCT 6 cut(s) 142, 460, 509, 617, 632, 666
AluI AGCT 6 cut(s) 142, 460, 509, 617, 632, 666
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 5 cut(s) 14, 45, 102, 302, 437
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 2 cut(s) 186, 208
ApoI RAATTY 2 cut(s) 44, 530
AsiGI ACCGGT 1 cut(s) 484
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 97, 331, 343
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 1 cut(s) 409
BciVI GTATCC 1 cut(s) 412
BcoDI GTCTC 5 cut(s) 14, 45, 102, 302, 437
BfaI CTAG 1 cut(s) 548
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 362
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
BmcAI AGTACT 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 186
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpuEI CTTGAG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 437
BsaWI WCCGGW 2 cut(s) 484, 682
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 682
BseGI GGATG 3 cut(s) 216, 309, 420
BseLI CCNNNNNNNGG 1 cut(s) 415
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 95, 152
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 70, 127
BshFI GGCC 2 cut(s) 188, 210
BshTI ACCGGT 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 485, 683
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 5 cut(s) 14, 45, 102, 302, 437
BsmBI CGTCTC 2 cut(s) 14, 302
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 2 cut(s) 188, 210
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 3 cut(s) 68, 125, 211
BspANI GGCC 2 cut(s) 188, 210
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 2 cut(s) 70, 127
BspMI ACCTGC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 484
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 561
Bst4CI ACNGT 3 cut(s) 248, 320, 581
Bst6I CTCTTC 2 cut(s) 305, 462
BstACI GRCGYC 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 3 cut(s) 216, 309, 420
BstFNI CGCG 2 cut(s) 70, 127
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 5 cut(s) 14, 45, 102, 302, 437
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 148, 283, 292
BstUI CGCG 2 cut(s) 70, 127
BstV2I GAAGAC 1 cut(s) 249
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 188, 210
BtsCI GGATG 3 cut(s) 216, 309, 420
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 158, 388, 577
CspAI ACCGGT 1 cut(s) 484
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 4 cut(s) 34, 270, 347, 671
CviQI GTAC 3 cut(s) 158, 388, 577
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 305, 462
EarI CTCTTC 2 cut(s) 305, 462
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 4 cut(s) 95, 286, 525, 531
EcoICRI GAGCTC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 144
Esp3I CGTCTC 2 cut(s) 14, 302
FaeI CATG 4 cut(s) 37, 273, 350, 674
FaiI YATR 8 cut(s) 35, 101, 179, 271, 348, 362, 465, 672
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 572
FatI CATG 4 cut(s) 33, 269, 346, 670
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 3 cut(s) 203, 296, 427
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 548
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 188, 210
HapII CCGG 2 cut(s) 485, 683
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 4 cut(s) 37, 273, 350, 674
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 485, 683
HphI GGTGA 3 cut(s) 97, 331, 343
Hpy188I TCNGA 2 cut(s) 50, 396
Hpy188III TCNNGA 5 cut(s) 28, 145, 565, 683, 705
HpyAV CCTTC 3 cut(s) 70, 605, 635
HpyCH4III ACNGT 3 cut(s) 248, 320, 581
HpyCH4IV ACGT 2 cut(s) 193, 561
HpyCH4V TGCA 4 cut(s) 286, 360, 647, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 283, 292
HpySE526I ACGT 2 cut(s) 193, 561
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 4 cut(s) 37, 273, 350, 674
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 139, 614, 685
LpnPI CCDG 9 cut(s) 192, 233, 272, 357, 422, 498, 516, 550, 696
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 548
MaeII ACGT 2 cut(s) 193, 561
MaeIII GTNAC 3 cut(s) 305, 320, 337
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 100, 103, 254, 292, 479
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 5 cut(s) 44, 450, 495, 517, 530
MlyI GAGTC 1 cut(s) 158
MroI TCCGGA 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 494, 498
MslI CAYNNNNRTG 2 cut(s) 329, 675
MspI CCGG 2 cut(s) 485, 683
MvnI CGCG 2 cut(s) 70, 127
MwoI GCNNNNNNNGC 3 cut(s) 148, 283, 292
NdeII GATC 1 cut(s) 24
NlaIII CATG 4 cut(s) 37, 273, 350, 674
NmuCI GTSAC 2 cut(s) 320, 337
PacI TTAATTAA 1 cut(s) 498
PaqCI CACCTGC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 2 cut(s) 190, 558
PdmI GAANNNNTTC 1 cut(s) 471
PflMI CCANNNNNTGG 1 cut(s) 415
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 3 cut(s) 159, 389, 578
RsaNI GTAC 3 cut(s) 158, 388, 577
RseI CAYNNNNRTG 2 cut(s) 329, 675
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 494, 498
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 186
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 329, 675
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 5 cut(s) 44, 450, 495, 517, 530
SsiI CCGC 3 cut(s) 68, 125, 211
SspMI CTAG 1 cut(s) 548
SstI GAGCTC 1 cut(s) 144
TaaI ACNGT 3 cut(s) 248, 320, 581
TaiI ACGT 2 cut(s) 196, 564
TasI AATT 5 cut(s) 44, 450, 495, 517, 530
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 494, 498
Tru9I TTAA 2 cut(s) 494, 498
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 320, 337
Tsp45I GTSAC 2 cut(s) 320, 337
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 415
XapI RAATTY 2 cut(s) 44, 530
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 221
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 1 cut(s) 548
ZraI GACGTC 1 cut(s) 562
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.