FvH4_7g03740

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011937
Physical Location & Seq
Forward (+)
4244730 .. 4248110
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03740.t1

Sequence Viewer

Length: 441 bp
ATGGTGAGAATGGCGCTGAGGAAAGTGGGTGACAAAGTCCTCATGGGTCGGGCGCAACGTGGCATCTTCGCCGGCCGTCACATCCAGTTCGGCAATAACGTCAGCGAAGACGGCGGCAACAAGACGAGGAGGCATTGGAAGCCAAATGTGCAGGAGAAGCGGCTCTTCAGTTACATCCTAGACCGCCAGATTCAAGTCAAAGTCACCACCCACGCCTTGCGCTGCATAGACAAGGCAGGTGGGATTGATGAATACTTTCTGAAAACTCCTTACCAGAAGATGGACACCGAGATGGGGCTTGTCTGGAAAGCGAAAATTGAAAAGCTGTATGAAGAGGTTGGGCAGACAGGGGGATATGCTTTCCTGCAACCTAAAGATGAATCCAAGGTTGAACAGGAATTTAAAGAGCTAAAACTAGATGAGAGGGAAGTCAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

147

Amino Acids

17.05

Weight (kDa)

9.59

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L28 PF00830 21 - 79 1e-22 Ribosomal L28 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 3 cut(s) 114, 160, 184
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 280, 294
AgsI TTSAA 3 cut(s) 194, 320, 392
AluBI AGCT 2 cut(s) 325, 409
AluI AGCT 2 cut(s) 325, 409
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 3 cut(s) 16, 55, 222
AsuHPI GGTGA 3 cut(s) 16, 41, 196
BbsI GAAGAC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 274, 286
BceAI ACGGC 2 cut(s) 60, 127
BfaI CTAG 2 cut(s) 179, 416
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 3 cut(s) 115, 161, 223
BlsI GCNGC 3 cut(s) 116, 162, 224
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 294
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 81, 174
BseLI CCNNNNNNNGG 2 cut(s) 280, 294
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 280, 294
BsnI GGCC 1 cut(s) 75
BspACI CCGC 3 cut(s) 114, 160, 184
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 384
Bst6I CTCTTC 2 cut(s) 170, 327
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 81, 174
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 3 cut(s) 16, 55, 222
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 111, 139, 148, 157
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 114
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 2 cut(s) 81, 174
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 3 cut(s) 16, 55, 222
Cfr10I RCCGGY 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 1 cut(s) 43
CviJI RGCY 6 cut(s) 75, 142, 163, 298, 325, 409
CviKI_1 RGCY 6 cut(s) 75, 142, 163, 298, 325, 409
DdeI CTNAG 1 cut(s) 17
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 170, 327
EarI CTCTTC 2 cut(s) 170, 327
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 384
Eco52I CGGCCG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 46
FaiI YATR 4 cut(s) 44, 227, 330, 357
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 115, 161, 223
FokI GGATG 2 cut(s) 68, 161
Fsp4HI GCNGC 3 cut(s) 115, 161, 223
FspBI CTAG 2 cut(s) 179, 416
GlaI GCGC 3 cut(s) 15, 54, 221
GluI GCNGC 3 cut(s) 115, 161, 223
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 72
HhaI GCGC 3 cut(s) 16, 55, 222
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 3 cut(s) 14, 53, 220
HinP1I GCGC 3 cut(s) 14, 53, 220
HinfI GANTC 2 cut(s) 190, 380
HpaII CCGG 1 cut(s) 72
HphI GGTGA 3 cut(s) 16, 41, 196
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 304, 433
HpyCH4IV ACGT 2 cut(s) 58, 99
HpyCH4V TGCA 3 cut(s) 151, 225, 367
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 139, 148, 157
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 2 cut(s) 58, 99
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 3 cut(s) 14, 53, 220
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 72
MaeI CTAG 2 cut(s) 179, 416
MaeII ACGT 2 cut(s) 58, 99
MaeIII GTNAC 4 cut(s) 29, 77, 170, 202
MboII GAAGA 5 cut(s) 58, 119, 157, 289, 344
MluCI AATT 2 cut(s) 315, 398
MnlI CCTC 6 cut(s) 12, 50, 120, 123, 328, 417
MroNI GCCGGC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 111, 139, 148, 157
NaeI GCCGGC 1 cut(s) 73
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 29, 77, 202
PaqCI CACCTGC 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 96
PdiI GCCGGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 190, 380
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 3 cut(s) 116, 162, 224
PsyI GACNNNGTC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 3 cut(s) 115, 161, 223
SetI ASST 8 cut(s) 61, 102, 241, 327, 339, 373, 390, 411
SfaNI GCATC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 315, 398
SsiI CCGC 3 cut(s) 114, 160, 184
SspMI CTAG 2 cut(s) 179, 416
StyI CCWWGG 1 cut(s) 384
TaiI ACGT 2 cut(s) 61, 102
TasI AATT 2 cut(s) 315, 398
TauI GCSGC 2 cut(s) 117, 163
TfiI GAWTC 2 cut(s) 190, 380
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseFI GTSAC 3 cut(s) 29, 77, 202
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 3 cut(s) 29, 77, 202
TspDTI ATGAA 3 cut(s) 264, 345, 393
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 280
XapI RAATTY 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 179, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.