Rroxscaffold_7G00163260

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011937
Physical Location & Seq
Forward (+)
5575204 .. 5576889
1686 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00163260.1

Sequence Viewer

Length: 672 bp
ATGAAAATGGCGCTGAGGGCGAAGGAGATGATGAGGAGCGTGATGAAGAAAGTCGGAGACAAAAACCTAAACCCCCGATTGAAACAGGAGCTCAAGAAGAATCGCTTGCCCGACCCCAAAATCGTCATGGGCCGGGCCCAACGTGGCATCTTCGCCGGCCGCCACATCCAGTTCGGCAATAACGTCAGCGAAGACGGCGGCAACAAGACAAGGAGGAATTGGAAGCCAAATGTGCAGGAGAAGCGGCTCTTCAGTTACATACTAGACCGCCAGATTCGAGTCAAAGTCACCACCCATGCTTTGCGTTGCATAGACAAGGCAGGTGGGATTGATGAGTACTTTCTGAAAACTCCTTACCACAAGATGGACACCGAAATGGGCCTTGTCTGGAAAGCCAAAATTGAAAAGCTGTATGAAGAGGTTGGGCAGACAGGGGGTTATGCTTTCCTACAACCTAAAGATGAAGCCAAGGTTGAACAGGAATTTAAAGAACTAAAACTAGATGAGAGGGAAGTCAAGAGACAGATGTATGGTTGGTCGAAGAAACTAAAACAGATCGAGGAACGAAAAGACAGCCAAATCAGTGATAAAGAAGCTCATGAGGAAGGTGCAGGAATAGGGGAAGATAGCTCTCACATAGAGGATCATGAGCAGTTGGTTGCAAACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L28

Protein Analysis

223

Amino Acids

25.95

Weight (kDa)

9.42

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L28 PF00830 49 - 107 9.4e-23 Ribosomal L28 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31460
fragaria_vesca FvH4_2g36661 FvH4_2g36661 FvH4_7g03740
malus_domestica MD08G1128100.v1.1 MD15G1107600.v1.1
prunus_persica Prupe.1G459900_v2.0.a1
pyrus_communis pycom15g09830
rosa_chinensis RchiOBHm_Chr6g0305011
rosa_laevigata RLG00000010928
rosa_multiflora Rmu_sc0023888.1_g000003 Rmu_sc0028342.1_g000006
rosa_roxburghii Rroxscaffold_7G00163260
rosa_rugosa Rorug06G0336700
rosa_samantha Rh6AG448300 Rh6BG452600 Rh6CG462000 Rh6DG448900
rosa_wichuraiana Rw6G039040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 364
AciI CCGC 4 cut(s) 160, 198, 244, 268
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 235
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 3 cut(s) 82, 404, 476
AluBI AGCT 4 cut(s) 91, 409, 596, 630
AluI AGCT 4 cut(s) 91, 409, 596, 630
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 51, 514
AlwI GGATC 1 cut(s) 651
AoxI GGCC 4 cut(s) 130, 135, 157, 379
ApaI GGGCCC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 482
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 4 cut(s) 130, 135, 136, 379
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 2 cut(s) 93, 139
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 14
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 51, 514
BfaI CTAG 2 cut(s) 263, 500
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 3 cut(s) 160, 199, 245
BlsI GCNGC 3 cut(s) 161, 200, 246
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 134
BmgT120I GGNCC 4 cut(s) 130, 135, 136, 379
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 157
BsgI GTGCAG 2 cut(s) 254, 630
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 4 cut(s) 132, 137, 159, 381
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 133, 156
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 51, 514
BsnI GGCC 4 cut(s) 132, 137, 159, 381
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 93, 139
Bsp143I GATC 2 cut(s) 555, 643
BspACI CCGC 4 cut(s) 160, 198, 244, 268
BspANI GGCC 4 cut(s) 132, 137, 159, 381
BspCNI CTCAG 1 cut(s) 6
BspHI TCATGA 2 cut(s) 598, 646
BspLI GGNNCC 1 cut(s) 137
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 651
BspQI GCTCTTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 2 cut(s) 555, 643
BssT1I CCWWGG 1 cut(s) 468
Bst6I CTCTTC 2 cut(s) 254, 411
BstC8I GCNNGC 2 cut(s) 107, 157
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 2 cut(s) 558, 646
BstMAI GTCTC 2 cut(s) 51, 514
BstMBI GATC 2 cut(s) 555, 643
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 17, 195, 232, 241
BstSCI CCNGG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 198
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 4 cut(s) 132, 137, 159, 381
BtsCI GGATG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 107, 157
CciI TCATGA 2 cut(s) 598, 646
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 4 cut(s) 130, 135, 136, 379
Csp6I GTAC 1 cut(s) 337
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 4 cut(s) 127, 296, 599, 647
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 557, 645
DpnII GATC 2 cut(s) 555, 643
DraI TTTAAA 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 157
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 254, 411
EarI CTCTTC 2 cut(s) 254, 411
Ecl136II GAGCTC 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 2 cut(s) 93, 139
Eco52I CGGCCG 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 93, 139
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 4 cut(s) 130, 299, 602, 650
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 233, 265
FatI CATG 4 cut(s) 126, 295, 598, 646
Fnu4HI GCNGC 3 cut(s) 160, 199, 245
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 2 cut(s) 93, 139
Fsp4HI GCNGC 3 cut(s) 160, 199, 245
FspBI CTAG 2 cut(s) 263, 500
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 160, 199, 245
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 4 cut(s) 132, 137, 159, 381
HapII CCGG 2 cut(s) 133, 156
HhaI GCGC 1 cut(s) 13
Hin1II CATG 4 cut(s) 130, 299, 602, 650
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 3 cut(s) 100, 274, 279
HpaII CCGG 2 cut(s) 133, 156
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 56, 345
Hpy188III TCNNGA 6 cut(s) 94, 388, 517, 599, 647, 669
HpyAV CCTTC 2 cut(s) 16, 599
HpyCH4IV ACGT 2 cut(s) 142, 183
HpyCH4V TGCA 4 cut(s) 235, 309, 611, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 195, 232, 241
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 142, 183
Hsp92II CATG 4 cut(s) 130, 299, 602, 650
HspAI GCGC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 555, 643
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 36, 88
LweI GCATC 1 cut(s) 156
MaeI CTAG 2 cut(s) 263, 500
MaeII ACGT 2 cut(s) 142, 183
MaeIII GTNAC 2 cut(s) 254, 286
MalI GATC 2 cut(s) 557, 645
MboI GATC 2 cut(s) 555, 643
MboII GAAGA 8 cut(s) 58, 109, 142, 203, 241, 428, 553, 635
MhlI GDGCHC 2 cut(s) 93, 139
MluCI AATT 3 cut(s) 217, 399, 482
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 8 cut(s) 9, 27, 207, 412, 501, 553, 595, 634
MroNI GCCGGC 1 cut(s) 155
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 374
MspI CCGG 2 cut(s) 133, 156
MspR9I CCNGG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 17, 195, 232, 241
NaeI GCCGGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 134
NdeII GATC 2 cut(s) 555, 643
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 4 cut(s) 130, 299, 602, 650
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 286
PagI TCATGA 2 cut(s) 598, 646
PaqCI CACCTGC 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 100, 274
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 3 cut(s) 161, 200, 246
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 137
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 4 cut(s) 130, 135, 136, 379
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 3 cut(s) 160, 199, 245
Sau3AI GATC 2 cut(s) 555, 643
Sau96I GGNCC 4 cut(s) 130, 135, 136, 379
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 2 cut(s) 93, 139
SfaNI GCATC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 217, 399, 482
SsiI CCGC 4 cut(s) 160, 198, 244, 268
SspMI CTAG 2 cut(s) 263, 500
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 468
TaiI ACGT 2 cut(s) 145, 186
TaqI TCGA 3 cut(s) 277, 539, 558
TasI AATT 3 cut(s) 217, 399, 482
TatI WGTACW 1 cut(s) 336
TauI GCSGC 3 cut(s) 162, 201, 247
TfiI GAWTC 2 cut(s) 100, 274
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 17, 59, 429, 477
TspRI CASTG 1 cut(s) 589
Van91I CCANNNNNTGG 1 cut(s) 364
XapI RAATTY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 2 cut(s) 263, 500
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.