Rorug06G0336700

Cotton fibre expressed protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
48871076 .. 48877778
6703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0336700.1

Sequence Viewer

Length: 2901 bp
ATGAAGAAAGGGAAGGGGAGGAACAACGGCGGCTTGTTGCCGAGCTCGCTGAGGATCATATCGTCGTGCCTCAAGACTGTTTCGACGAATGCCAGCACCGTCGCTTCTACGGTTCGCTCCGCCGGTGCGTCCGTCGCTGCTTCTATTTCTGCTTCCGAGGATCAGAAGGATCAGGTAACCTGGGCTGGCTTTGACAGGCTAGAGCTTGGTCATTCTGCCTTCAAACGCGTTCTGTTGCTTGGTTATCAGAATGGATTTCAAGTTTTTGATGTCGAGGATGCCTCTAACTACAGCGAACTGGTTTCAAAGCGTGATGGCCCAGTTTCGTTCTTACAGATGCAGCCCTATCCTGCAGCATCTGATGATGAGGAGGGATTTAGAGCTTCTCATCCTATGTTGCTGGTTGTTGCTGGAGATGACACCAATGGTTCAGGCGTTGTTCAAAATCACAGCAACTTGGGAGGCTTAGGAAGAGATGGTCATTTGGAGTCTCGGCCAGGAAACCCTTTCAGCTCTCCTACAGCTGTTCGGTTTTACTCGCTCAGGTCCCACAGTTATGTGCATGTTCTGAGATTTCGGTCTGCTGTCTGCATGATTAGATGCAGTCCTCGGATAGTAGCTGTTGGTCTTGCAAGTCAAATATATTGCTTTGATGCGCTCACCCTCGAAAATAAATTCAGTGTTCTTACCTATCCTGTTCCTCAGCTAGCAGGACAAGGATCCTCTGGGTTTAACGTAGGTTATGGCCCAATGGCTGTGGGTCCTAGGTGGCTAGCTTATGCTTCCAACAGCCCACTCATGTCAAACACAAGTCGCTTAGGTCCCCACAATCTTACTCCTTCTCCAGGAGTTAGTCCATCTACATCACCTGGTAATGGTAGTTACGTGGCTCGTTATGCAATGGAGTCTAGTAAACAGCTGGCCGCTGGAATTATCAACCTGGGTGACATGGGATGCAAAACCTTGTACAAATACTGTCAAGAGCTCCTCCCAGATGGGTCTAGTTCTCCAGTATCATCAAATTCAGGCTGGAAAGTTAGCAGGCTTGCCGGAACAGAAATGGATAGTGCTGGGATGGTTGTTGTCAAAGATTTTGTTACCCGAGCTGTTATATCGCAGTTTAAAGCTCATACTAGTCCAATATCTGCACTGTGTTTTGATCCCAGTGGGACCCTTCTTGTTACTGCCTCAATATATGGAAATAACATTAATATTTTTCGGATAATGCCTTCATGCAAACGCAATGGATCAGGCGTTCAGAACATGAATTGGAGCTCGTCTCATGTGCATCTATACAAACTGCATCGTGGAATAACATCAGCTATGATCCAGGACATTTGCTTCAGTCATTATTCTCAATGGGTTGCAATTGTTTCATCCAAGGGGACCTGCCATGTTTTTGTTTTATCCCCTTTTGGTGGTGATGCTGGATTTCAAGTTCAACATTCCCAGGGTGAAGAACCCACACTATATCCAGTTTTATCTCTTCCTTGGTGGTCTACTTCTTCTTGCATCATGAGTCAACAATCTTTTCCACCCCCACCGCCTGTTGTTCTTTCAGTTGTGAGCAGAATAAAGTATAGTAGTTTTGGATGGCTTAGCACGGTCAACAATGCCGCTGGTTCCACAACAGGAAAGGTATTCGTACCATCAGGTGCTGTTGCGGCTGTTTTTCATAATTCCCTTTCTCAAAGTGTTCAGCACAGTAACTCAAGGGCTGGTACCTTGGAGCATCTATTAGTTTATACTCCATCAGGTCATGTAGTTCAACATGAACTTCAGCCAAGAGTAGGGGTAGAACAAAGTCATAGTGGTTTGAATACCCAGACAGCTACATACATGCACATGCAGGAGGAAGACCTGAGAGTGAAAGTTGAACCTATACAGTGGTGGGATGTATGCAGACGTTCAGATTGGCCAGAAAGAGAGGACTGTATTTTAGGAATTAATGCTGATCGTCAAGATGTGGCTGAAACAATTCAAAGTAAATCAGGTTCTGATGGTACTTATGCATTGGAGTTTCTTGACTTAAATGGTGGTGTTGAGGGGAAAAGGAACCTGGAAACGCATAGGTCCAGGAATATTTCTAATGCAGAGGTGCAAATAAATTCTTTCAGATTACCAATATGGCAAAAGTCGAAGATTTGTTTTTATACAATGGAGTGTCAAGGAGTTGATAGTTTTTCTGGTGGAGAGTTTGAAGTTGAAAAAGTCCCTGTTCATGAAATTGAAATGAGACAGAAGGAATTGTTGCCTGTTTTTCACCAATTCCATAGCATCAAATCAAGCTGGAATGATAGAGTTCTAGTTGGAAAAAATTCAAATCATTCTTCGTCAGAATCTCATCAAGCTGAAGGTTCATCAAGAAGAATTGAGCATTCACTAGATTTCGATCAAATCAACAGTGATCTACCCCGCTCTCCCATTTTTCAGACTTTGAATTGCCCGGAAAGAAGAGCAAATGCTATTCTTGAGTCTTCATTTCAAAACCATACATCTCTCGGCACTCTGTGTGCTCCATCTGAACATTTTAAGATCATTGGTTCTCAAGTCGGGAGTTGTGCTGTATTAGAAAGTAAGCTTCTCCAAGTAGGTAGATTCTGTGCTGAAGAAGGCCTGTCAGTGAAAACAATTGGGATGAGTGAGGACACAGATTTATACACGGATCAACATGCTTCAAGTACTGTTCTTGTGACAGAGGGGGATTCCAATCTGCAGCGTCCAATAGATCTTTCGCAGTTTTTCCAGGAGGGGCATTGTAAGGCATTGGAGCAGAATGGATGCCTATCTGGAGTCATAACCGATGATAGTGATGGGAGCCAATGCGATAAGGGGAAACCTGACGATGAAGAAAATAGCGAAATGCTTGGAGGCATGTTCGCCTTTTCTGATGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

966

Amino Acids

105.09

Weight (kDa)

6.06

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 174 - 479 1.6e-31 BCAS3, WD40 repeat
BCAS3 PF12490 614 - 755 1.1e-42 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1397
Acc65I GGTACC 1 cut(s) 1721
AccB1I GGYRCC 1 cut(s) 1721
AccBSI CCGCTC 1 cut(s) 2418
AccI GTMKAC 1 cut(s) 1499
AccII CGCG 1 cut(s) 228
AciI CCGC 7 cut(s) 30, 120, 924, 1544, 1617, 1664, 2416
AclWI GGATC 9 cut(s) 62, 168, 177, 714, 727, 1154, 1255, 1321, 2673
AcoI YGGCCR 3 cut(s) 494, 921, 1916
AcsI RAATTY 4 cut(s) 674, 1021, 2107, 2317
AcuI CTGAAG 4 cut(s) 1327, 1763, 2373, 2628
AdeI CACNNNGTG 1 cut(s) 2511
AfaI GTAC 5 cut(s) 968, 1647, 1723, 2005, 2683
AfiI CCNNNNNNNGG 4 cut(s) 845, 875, 1418, 1790
AflIII ACRYGT 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 2716, 2748
AloI GAACNNNNNNTCC 4 cut(s) 1239, 1271, 1422, 1454
Alw21I GWGCWC 4 cut(s) 47, 987, 1277, 2518
Alw26I GTCTC 3 cut(s) 495, 1284, 2230
AlwI GGATC 9 cut(s) 62, 168, 177, 714, 727, 1154, 1255, 1321, 2673
AlwNI CAGNNNCTG 3 cut(s) 359, 1658, 1997
Ama87I CYCGRG 1 cut(s) 1101
AoxI GGCC 6 cut(s) 316, 494, 745, 921, 1916, 2614
ApeKI GCWGC 4 cut(s) 137, 340, 353, 2716
ApoI RAATTY 4 cut(s) 674, 1021, 2107, 2317
AseI ATTAAT 2 cut(s) 1209, 1947
Asp700I GAANNNNTTC 2 cut(s) 1977, 2317
Asp718I GGTACC 1 cut(s) 1721
AspA2I CCTAGG 1 cut(s) 764
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 8 cut(s) 317, 546, 746, 761, 821, 1170, 1386, 2073
AsuC2I CCSGG 1 cut(s) 2447
AsuHPI GGTGA 6 cut(s) 652, 858, 956, 1433, 1466, 2255
AsuNHI GCTAGC 2 cut(s) 706, 772
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 6 cut(s) 546, 761, 821, 1170, 1386, 2073
AvrII CCTAGG 1 cut(s) 764
BalI TGGCCA 1 cut(s) 1918
BamHI GGATCC 1 cut(s) 719
BanI GGYRCC 1 cut(s) 1721
BanII GRGCYC 3 cut(s) 47, 987, 1277
BbsI GAAGAC 2 cut(s) 1863, 2469
Bbv12I GWGCWC 4 cut(s) 47, 987, 1277, 2518
BbvCI CCTCAGC 2 cut(s) 50, 702
BbvI GCAGC 4 cut(s) 124, 352, 365, 2728
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 2447
BcoDI GTCTC 3 cut(s) 495, 1284, 2230
BcuI ACTAGT 1 cut(s) 1133
BfaI CTAG 9 cut(s) 200, 707, 765, 773, 909, 1002, 1134, 2306, 2384
BfmI CTRYAG 4 cut(s) 289, 351, 519, 2714
BfuAI ACCTGC 1 cut(s) 1397
BglII AGATCT 1 cut(s) 2728
BisI GCNGC 8 cut(s) 31, 138, 341, 354, 924, 1617, 1665, 2717
BlnI CCTAGG 1 cut(s) 764
BlpI GCTNAGC 1 cut(s) 1598
BlsI GCNGC 8 cut(s) 32, 139, 342, 355, 925, 1618, 1666, 2718
BmcAI AGTACT 1 cut(s) 2683
Bme18I GGWCC 6 cut(s) 546, 761, 821, 1170, 1386, 2073
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 8 cut(s) 317, 546, 746, 761, 821, 1170, 1386, 2073
BmrI ACTGGG 2 cut(s) 314, 1158
BmtI GCTAGC 2 cut(s) 710, 776
BmuI ACTGGG 2 cut(s) 314, 1158
BpiI GAAGAC 2 cut(s) 1863, 2469
BplI GAGNNNNNCTC 4 cut(s) 266, 298, 1264, 1296
BpmI CTGGAG 4 cut(s) 432, 828, 993, 2811
Bpu10I CCTNAGC 5 cut(s) 50, 466, 542, 702, 817
Bpu1102I GCTNAGC 1 cut(s) 1598
BpuEI CTTGAG 4 cut(s) 56, 1696, 2492, 2532
BpuMI CCSGG 1 cut(s) 2447
BsaAI YACGTR 1 cut(s) 886
BsaBI GATNNNNATC 3 cut(s) 2391, 2709, 2785
BsaXI ACNNNNNCTCC 2 cut(s) 826, 856
Bsc4I CCNNNNNNNGG 4 cut(s) 845, 875, 1418, 1790
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 5 cut(s) 303, 320, 1010, 1164, 1475
Bse3DI GCAATG 2 cut(s) 906, 1249
Bse8I GATNNNNATC 3 cut(s) 2391, 2709, 2785
BseGI GGATG 9 cut(s) 283, 388, 959, 1080, 1376, 1598, 1900, 2643, 2786
BseJI GATNNNNATC 3 cut(s) 2391, 2709, 2785
BseLI CCNNNNNNNGG 4 cut(s) 845, 875, 1418, 1790
BseMI GCAATG 2 cut(s) 906, 1249
BseMII CTCAG 5 cut(s) 41, 556, 560, 716, 1853
BseNI ACTGG 5 cut(s) 303, 320, 1010, 1164, 1475
BseRI GAGGAG 2 cut(s) 383, 977
BseXI GCAGC 4 cut(s) 124, 352, 365, 2728
BseYI CCCAGC 1 cut(s) 1070
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 6 cut(s) 318, 496, 747, 923, 1918, 2616
BshNI GGYRCC 1 cut(s) 1721
BsiHKAI GWGCWC 4 cut(s) 47, 987, 1277, 2518
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 3 cut(s) 123, 1050, 2447
BslFI GGGAC 5 cut(s) 532, 807, 1183, 1399, 2198
BslI CCNNNNNNNGG 4 cut(s) 845, 875, 1418, 1790
BsmAI GTCTC 3 cut(s) 495, 1284, 2230
BsmBI CGTCTC 1 cut(s) 1284
BsmFI GGGAC 5 cut(s) 532, 807, 1183, 1399, 2198
BsmI GAATGC 2 cut(s) 94, 2377
BsnI GGCC 6 cut(s) 318, 496, 747, 923, 1918, 2616
BsoBI CYCGRG 1 cut(s) 1101
Bsp1286I GDGCHC 4 cut(s) 47, 987, 1277, 2518
Bsp1407I TGTACA 1 cut(s) 966
Bsp1720I GCTNAGC 1 cut(s) 1598
BspACI CCGC 7 cut(s) 30, 120, 924, 1544, 1617, 1664, 2416
BspANI GGCC 6 cut(s) 318, 496, 747, 923, 1918, 2616
BspCNI CTCAG 5 cut(s) 42, 555, 561, 715, 1854
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 2 cut(s) 1515, 2221
BspMAI CTGCAG 2 cut(s) 355, 2718
BspMI ACCTGC 1 cut(s) 1397
BspOI GCTAGC 2 cut(s) 710, 776
BspPI GGATC 9 cut(s) 62, 168, 177, 714, 727, 1154, 1255, 1321, 2673
BspQI GCTCTTC 1 cut(s) 2449
BspT107I GGYRCC 1 cut(s) 1721
BsrBI CCGCTC 1 cut(s) 2418
BsrDI GCAATG 2 cut(s) 906, 1249
BsrFI RCCGGY 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 5 cut(s) 303, 320, 1010, 1164, 1475
BssAI RCCGGY 1 cut(s) 122
BssT1I CCWWGG 4 cut(s) 764, 1380, 1490, 1725
Bst6I CTCTTC 3 cut(s) 466, 1491, 2449
BstAUI TGTACA 1 cut(s) 966
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 8 cut(s) 47, 94, 187, 708, 774, 921, 1043, 1047
BstDEI CTNAG 8 cut(s) 50, 466, 542, 569, 702, 817, 1598, 1862
BstEII GGTNACC 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 843
BstF5I GGATG 9 cut(s) 283, 388, 959, 1080, 1376, 1598, 1900, 2643, 2786
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 658
BstMAI GTCTC 3 cut(s) 495, 1284, 2230
BstMWI GCNNNNNNNGC 4 cut(s) 46, 134, 896, 1664
BstNSI RCATGY 5 cut(s) 566, 1843, 1849, 2675, 2878
BstPI GGTNACC 1 cut(s) 175
BstSFI CTRYAG 4 cut(s) 289, 351, 519, 2714
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 124, 352, 365, 2728
BstV2I GAAGAC 2 cut(s) 1863, 2469
BstX2I RGATCY 2 cut(s) 719, 2728
BstYI RGATCY 2 cut(s) 719, 2728
BsuRI GGCC 6 cut(s) 318, 496, 747, 923, 1918, 2616
BtsCI GGATG 9 cut(s) 283, 388, 959, 1080, 1376, 1598, 1900, 2643, 2786
BtsIMutI CAGTG 6 cut(s) 685, 1148, 1171, 1892, 2410, 2628
BveI ACCTGC 1 cut(s) 1397
Cac8I GCNNGC 8 cut(s) 47, 94, 187, 708, 774, 921, 1043, 1047
CaiI CAGNNNCTG 3 cut(s) 359, 1658, 1997
CciI TCATGA 2 cut(s) 1515, 2221
CfoI GCGC 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 8 cut(s) 317, 546, 746, 761, 821, 1170, 1386, 2073
CseI GACGC 2 cut(s) 117, 2708
CsiI ACCWGGT 1 cut(s) 868
Csp6I GTAC 5 cut(s) 967, 1646, 1722, 2004, 2682
CspCI CAANNNNNGTGG 2 cut(s) 738, 773
CviQI GTAC 5 cut(s) 967, 1646, 1722, 2004, 2682
DdeI CTNAG 8 cut(s) 50, 466, 542, 569, 702, 817, 1598, 1862
DraI TTTAAA 1 cut(s) 1123
DraIII CACNNNGTG 1 cut(s) 2511
EaeI YGGCCR 3 cut(s) 494, 921, 1916
Eam1104I CTCTTC 3 cut(s) 466, 1491, 2449
EarI CTCTTC 3 cut(s) 466, 1491, 2449
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 3 cut(s) 45, 985, 1275
Eco130I CCWWGG 4 cut(s) 764, 1380, 1490, 1725
Eco147I AGGCCT 1 cut(s) 2616
Eco24I GRGCYC 3 cut(s) 47, 987, 1277
Eco47I GGWCC 6 cut(s) 546, 761, 821, 1170, 1386, 2073
Eco53kI GAGCTC 3 cut(s) 45, 985, 1275
Eco57I CTGAAG 4 cut(s) 1327, 1763, 2373, 2628
Eco88I CYCGRG 1 cut(s) 1101
Eco91I GGTNACC 1 cut(s) 175
EcoICRI GAGCTC 3 cut(s) 45, 985, 1275
EcoNI CCTNNNNNAGG 1 cut(s) 843
EcoO109I RGGNCCY 5 cut(s) 546, 761, 821, 1170, 1386
EcoO65I GGTNACC 1 cut(s) 175
EcoT14I CCWWGG 4 cut(s) 764, 1380, 1490, 1725
EcoT22I ATGCAT 1 cut(s) 2014
EcoT38I GRGCYC 3 cut(s) 47, 987, 1277
ErhI CCWWGG 4 cut(s) 764, 1380, 1490, 1725
Esp3I CGTCTC 1 cut(s) 1284
FaqI GGGAC 5 cut(s) 532, 807, 1183, 1399, 2198
FauI CCCGC 1 cut(s) 2423
FblI GTMKAC 1 cut(s) 1499
Fnu4HI GCNGC 8 cut(s) 31, 138, 341, 354, 924, 1617, 1665, 2717
FokI GGATG 9 cut(s) 290, 375, 966, 1087, 1363, 1605, 1907, 2650, 2793
FriOI GRGCYC 3 cut(s) 47, 987, 1277
Fsp4HI GCNGC 8 cut(s) 31, 138, 341, 354, 924, 1617, 1665, 2717
FspBI CTAG 9 cut(s) 200, 707, 765, 773, 909, 1002, 1134, 2306, 2384
GlaI GCGC 1 cut(s) 657
GluI GCNGC 8 cut(s) 31, 138, 341, 354, 924, 1617, 1665, 2717
GsaI CCCAGC 1 cut(s) 1074
GsuI CTGGAG 4 cut(s) 432, 828, 993, 2811
HaeIII GGCC 6 cut(s) 318, 496, 747, 923, 1918, 2616
HapII CCGG 3 cut(s) 123, 1050, 2447
HgaI GACGC 2 cut(s) 117, 2708
HhaI GCGC 1 cut(s) 658
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 2 cut(s) 1523, 1609
HindII GTYRAC 2 cut(s) 1523, 1609
HindIII AAGCTT 1 cut(s) 2579
HinfI GANTC 8 cut(s) 488, 905, 1519, 2339, 2474, 2598, 2705, 2793
HpaII CCGG 3 cut(s) 123, 1050, 2447
HphI GGTGA 6 cut(s) 652, 858, 956, 1433, 1466, 2255
Hpy166II GTNNAC 4 cut(s) 914, 1500, 1523, 1609
Hpy8I GTNNAC 4 cut(s) 914, 1500, 1523, 1609
Hpy99I CGWCG 4 cut(s) 67, 88, 104, 137
HpyCH4IV ACGT 3 cut(s) 735, 885, 1906
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 134, 896, 1664
HpyF3I CTNAG 8 cut(s) 50, 466, 542, 569, 702, 817, 1598, 1862
HpySE526I ACGT 3 cut(s) 735, 885, 1906
HspAI GCGC 1 cut(s) 656
KflI GGGWCCC 1 cut(s) 1170
KpnI GGTACC 1 cut(s) 1725
LguI GCTCTTC 1 cut(s) 2449
LmnI GCTCC 7 cut(s) 122, 990, 1272, 1729, 2521, 2770, 2817
Lsp1109I GCAGC 4 cut(s) 124, 352, 365, 2728
MabI ACCWGGT 1 cut(s) 868
MaeI CTAG 9 cut(s) 200, 707, 765, 773, 909, 1002, 1134, 2306, 2384
MaeII ACGT 3 cut(s) 735, 885, 1906
MaeIII GTNAC 7 cut(s) 175, 881, 944, 1096, 1180, 1706, 2692
MbiI CCGCTC 1 cut(s) 2418
MfeI CAATTG 2 cut(s) 1368, 2631
MflI RGATCY 2 cut(s) 719, 2728
MhlI GDGCHC 4 cut(s) 47, 987, 1277, 2518
MlsI TGGCCA 1 cut(s) 1918
MluI ACGCGT 1 cut(s) 226
MluNI TGGCCA 1 cut(s) 1918
MlyI GAGTC 5 cut(s) 497, 914, 1528, 2483, 2802
MmeI TCCRAC 2 cut(s) 810, 2290
Mox20I TGGCCA 1 cut(s) 1918
Mph1103I ATGCAT 1 cut(s) 2014
MroXI GAANNNNTTC 2 cut(s) 1977, 2317
MscI TGGCCA 1 cut(s) 1918
MseI TTAA 7 cut(s) 732, 1122, 1209, 1947, 2030, 2532, 2899
MslI CAYNNNNRTG 2 cut(s) 555, 1844
Msp20I TGGCCA 1 cut(s) 1918
MspA1I CMGCKG 4 cut(s) 524, 919, 926, 1619
MspI CCGG 3 cut(s) 123, 1050, 2447
MunI CAATTG 2 cut(s) 1368, 2631
Mva1269I GAATGC 2 cut(s) 94, 2377
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 46, 134, 896, 1664
NciI CCSGG 1 cut(s) 2447
NheI GCTAGC 2 cut(s) 706, 772
NmeAIII GCCGAG 3 cut(s) 66, 472, 2481
NmuCI GTSAC 2 cut(s) 944, 2692
NsiI ATGCAT 1 cut(s) 2014
NspI RCATGY 5 cut(s) 566, 1843, 1849, 2675, 2878
PagI TCATGA 2 cut(s) 1515, 2221
PasI CCCWGGG 1 cut(s) 1450
PceI AGGCCT 1 cut(s) 2616
PciSI GCTCTTC 1 cut(s) 2449
PctI GAATGC 2 cut(s) 94, 2377
PdmI GAANNNNTTC 2 cut(s) 1977, 2317
PfeI GAWTC 3 cut(s) 2339, 2598, 2705
PfoI TCCNGGA 4 cut(s) 844, 1329, 2075, 2745
PkrI GCNGC 8 cut(s) 32, 139, 342, 355, 925, 1618, 1666, 2718
PleI GAGTC 5 cut(s) 496, 913, 1527, 2482, 2801
PpsI GAGTC 5 cut(s) 496, 913, 1527, 2482, 2801
Ppu21I YACGTR 1 cut(s) 886
PpuMI RGGWCCY 5 cut(s) 546, 761, 821, 1170, 1386
PshBI ATTAAT 2 cut(s) 1209, 1947
Psp124BI GAGCTC 3 cut(s) 47, 987, 1277
Psp5II RGGWCCY 5 cut(s) 546, 761, 821, 1170, 1386
PspEI GGTNACC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 1070
PspPI GGNCC 8 cut(s) 317, 546, 746, 761, 821, 1170, 1386, 2073
PspPPI RGGWCCY 5 cut(s) 546, 761, 821, 1170, 1386
PsrI GAACNNNNNNTAC 2 cut(s) 1978, 2010
PstI CTGCAG 2 cut(s) 355, 2718
PstNI CAGNNNCTG 3 cut(s) 359, 1658, 1997
PsuI RGATCY 2 cut(s) 719, 2728
PvuII CAGCTG 2 cut(s) 524, 919
RsaI GTAC 5 cut(s) 968, 1647, 1723, 2005, 2683
RsaNI GTAC 5 cut(s) 967, 1646, 1722, 2004, 2682
RseI CAYNNNNRTG 2 cut(s) 555, 1844
SacI GAGCTC 3 cut(s) 47, 987, 1277
SapI GCTCTTC 1 cut(s) 2449
SaqAI TTAA 7 cut(s) 732, 1122, 1209, 1947, 2030, 2532, 2899
SatI GCNGC 8 cut(s) 31, 138, 341, 354, 924, 1617, 1665, 2717
Sau96I GGNCC 8 cut(s) 317, 546, 746, 761, 821, 1170, 1386, 2073
ScaI AGTACT 1 cut(s) 2683
SchI GAGTC 5 cut(s) 497, 914, 1528, 2483, 2802
SduI GDGCHC 4 cut(s) 47, 987, 1277, 2518
SexAI ACCWGGT 1 cut(s) 868
SfcI CTRYAG 4 cut(s) 289, 351, 519, 2714
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 6 cut(s) 546, 761, 821, 1170, 1386, 2073
SmiMI CAYNNNNRTG 2 cut(s) 555, 1844
SmlI CTYRAG 4 cut(s) 71, 1711, 2471, 2547
SmoI CTYRAG 4 cut(s) 71, 1711, 2471, 2547
SpeI ACTAGT 1 cut(s) 1133
SseBI AGGCCT 1 cut(s) 2616
SsiI CCGC 7 cut(s) 30, 120, 924, 1544, 1617, 1664, 2416
SspI AATATT 2 cut(s) 1213, 2083
SspMI CTAG 9 cut(s) 200, 707, 765, 773, 909, 1002, 1134, 2306, 2384
SstI GAGCTC 3 cut(s) 47, 987, 1277
StuI AGGCCT 1 cut(s) 2616
StyI CCWWGG 4 cut(s) 764, 1380, 1490, 1725
TaiI ACGT 3 cut(s) 738, 888, 1909
TaqI TCGA 5 cut(s) 83, 273, 666, 2138, 2391
TaqII GACCGA 1 cut(s) 567
TatI WGTACW 2 cut(s) 966, 2681
TauI GCSGC 4 cut(s) 33, 926, 1619, 1667
TfiI GAWTC 3 cut(s) 2339, 2598, 2705
Tru1I TTAA 7 cut(s) 732, 1122, 1209, 1947, 2030, 2532, 2899
Tru9I TTAA 7 cut(s) 732, 1122, 1209, 1947, 2030, 2532, 2899
TscAI CASTG 6 cut(s) 685, 1155, 1171, 1892, 2410, 2628
TseFI GTSAC 2 cut(s) 944, 2692
TseI GCWGC 4 cut(s) 137, 340, 353, 2716
Tsp45I GTSAC 2 cut(s) 944, 2692
TspGWI ACGGA 2 cut(s) 121, 2678
TspRI CASTG 6 cut(s) 685, 1155, 1171, 1892, 2410, 2628
VpaK11BI GGWCC 6 cut(s) 546, 761, 821, 1170, 1386, 2073
VspI ATTAAT 2 cut(s) 1209, 1947
XagI CCTNNNNNAGG 1 cut(s) 843
XapI RAATTY 4 cut(s) 674, 1021, 2107, 2317
XceI RCATGY 5 cut(s) 566, 1843, 1849, 2675, 2878
XmaJI CCTAGG 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 1499
XmnI GAANNNNTTC 2 cut(s) 1977, 2317
XspI CTAG 9 cut(s) 200, 707, 765, 773, 909, 1002, 1134, 2306, 2384
ZrmI AGTACT 1 cut(s) 2683
Zsp2I ATGCAT 1 cut(s) 2014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.