RchiOBHm_Chr1g0336341

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006388
Physical Location & Seq
Forward (+)
28019586 .. 28019960
375 bp
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UTR
Exon/CDS
Intron
PRQ56430

Sequence Viewer

Length: 375 bp
ATGGGTAGAGTCAGGAGTTTGTCACTTGTAAGCCACCTGAAGAAAGCAGTGAAGAAAGTGAGACTCATTTTGCTTGGCCTTAAACTACAGAGGTGGCGCATAGCTTCAGTTCTTGGATGCGCTGCAACTAAAAGCCGGTGTTTGAGCTTCAATGAAAGATTGGGTTTGGAGGGCTGCATAGAAGTTGATACATCTGATTATCAGAATAGCTCCCACTTGAGAAGAATTCATAGCACAATTAGTCGTTCTTCTTCGATTGATTATGAGGATGTTGATCAAAGGGCTGATGCTTTCATTGCTAATTTTCGACGGCAGCTCAGATTAGAGAGACAGGTTTCTCTGGAGCTACGCTACTGCCGGAGTGAGAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

124

Amino Acids

14.28

Weight (kDa)

10.11

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 89 - 119 5.1e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 2 cut(s) 59, 90
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 5 cut(s) 104, 147, 210, 316, 346
AluI AGCT 5 cut(s) 104, 147, 210, 316, 346
Alw26I GTCTC 2 cut(s) 55, 322
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 122, 174, 313
ApoI RAATTY 1 cut(s) 225
AspLEI GCGC 2 cut(s) 99, 122
BbvI GCAGC 3 cut(s) 109, 161, 325
BceAI ACGGC 1 cut(s) 326
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 55, 322
BfmI CTRYAG 1 cut(s) 86
BisI GCNGC 3 cut(s) 123, 175, 314
BlsI GCNGC 3 cut(s) 124, 176, 315
BmsI GCATC 2 cut(s) 107, 277
BpmI CTGGAG 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 273
BseGI GGATG 2 cut(s) 122, 274
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 331
BseXI GCAGC 3 cut(s) 109, 161, 325
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 136, 358
BsmAI GTCTC 2 cut(s) 55, 322
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssMI GATC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 122, 274
BstHHI GCGC 2 cut(s) 99, 122
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 2 cut(s) 55, 322
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 3 cut(s) 109, 161, 325
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 122, 274
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 2 cut(s) 99, 122
Cfr10I RCCGGY 1 cut(s) 135
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 59, 90
EcoRI GAATTC 1 cut(s) 225
FaiI YATR 4 cut(s) 101, 179, 231, 264
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 123, 175, 314
FokI GGATG 2 cut(s) 129, 281
Fsp4HI GCNGC 3 cut(s) 123, 175, 314
GlaI GCGC 2 cut(s) 98, 121
GluI GCNGC 3 cut(s) 123, 175, 314
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 78
HapII CCGG 2 cut(s) 136, 358
HhaI GCGC 2 cut(s) 99, 122
Hin6I GCGC 2 cut(s) 97, 120
HinP1I GCGC 2 cut(s) 97, 120
HinfI GANTC 2 cut(s) 9, 63
HpaII CCGG 2 cut(s) 136, 358
Hpy188I TCNGA 3 cut(s) 196, 204, 320
Hpy188III TCNNGA 2 cut(s) 13, 341
Hpy99I CGWCG 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 125, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 317
HspAI GCGC 2 cut(s) 97, 120
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 215, 343
LpnPI CCDG 5 cut(s) 50, 149, 317, 326, 371
Lsp1109I GCAGC 3 cut(s) 109, 161, 325
LweI GCATC 2 cut(s) 107, 277
MaeIII GTNAC 1 cut(s) 21
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 5 cut(s) 52, 64, 234, 240, 243
MluCI AATT 3 cut(s) 225, 237, 301
MlyI GAGTC 2 cut(s) 18, 57
MnlI CCTC 3 cut(s) 84, 163, 259
MseI TTAA 1 cut(s) 81
MspI CCGG 2 cut(s) 136, 358
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 21
PkrI GCNGC 3 cut(s) 124, 176, 315
PleI GAGTC 2 cut(s) 17, 57
PpsI GAGTC 2 cut(s) 17, 57
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 3 cut(s) 123, 175, 314
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 2 cut(s) 18, 57
SetI ASST 8 cut(s) 39, 95, 106, 149, 212, 318, 336, 348
SfaNI GCATC 2 cut(s) 107, 277
SfcI CTRYAG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 3 cut(s) 225, 237, 301
TaqI TCGA 2 cut(s) 254, 307
TasI AATT 3 cut(s) 225, 237, 301
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 3 cut(s) 122, 174, 313
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 168, 218, 283
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.