Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006388

Physical Location & Seq

Genomic Coordinates Forward (+)

21453915 .. 21455464

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCAGGTCTATTTGACAAGCAGGCAGAGATATACGTGGAAGCTCGGCCAACGTATCCCAAGGAATGGTATTCAAAGCTGGCTGCTCTCACCCCACAACACTCTTTAGCTTGGGATGTTGGCACTGGCAGTGGCCAAGCTACCGTCGGTCTTTTAGAGCATTACGACCAAGTAGTTGGAAGTGATATAAGTGAAGCACAATTGAACCATGCCATCCAGCACCCTCGAGTTCGATACATTCACACTCCAACATCAATCTCAGACGATGAAATGGTTGACTTAATAGGGGGCGGTCATGAAAATTCAGTTGATTTGGTTACAGTGGCTACTGCCGTTCACTGGTTTGATCTGCCACACTTCTACTCGCTTGTCAAACGCCTTCTGCGTAAACCAGGAGGCATAATTGCTGTTTGGTGCTACAACAGCATGGACTGCATGGTCGTAGGCCCTGACTTTGATCTTGCAATGAAGAGTTTACACGAAAATTGTCTTCCATTTTGGGACCCGAGGGCAAAGTACGCATTTGAGGGTTATAGGACACTTCCTTTTCCATTTGAGAGCGTTGGATTGGGTCGTGAAGGTGAACCTATCACACTTGAAATACCAAGGGAATTGTCATTTCAGGGGGTTGAGAGGATGTTGAGGTCTTACTCTGCAGTCACTACGGCTAAAGACCAGGGTGTGGATTTGTTGTCTGAAGATGTGATTAAAGAACTTCAAAGAGCTTGGGGTGGGCATGATCTGATTAGATCAGTTACAATCAAGGCATGTATGCTTGTGGGCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

263

Amino Acids

29.41

Weight (kDa)

5.44

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 136	6.3e-09	Methyltransferase domain
Methyltransf_25	PF13649	39 - 131	2.3e-08	Methyltransferase domain
Methyltransf_12	PF08242	39 - 134	2.3e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006388)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36750
malus_domestica	MD08G1128200.v1.1 MD15G1107700.v1.1
prunus_persica	Prupe.1G460000_v2.0.a1
pyrus_communis	pycom08g10710 pycom15g09840
rosa_chinensis	RchiOBHm_Chr1g0336341 RchiOBHm_Chr6g0305001
rosa_laevigata	RLG00000010929 RLG00000029373
rosa_multiflora	Rmu_co8096954.1_g000001 Rmu_sc0005261.1_g000014 Rmu_sc0023888.1_g000002 Rmu_sc0028342.1_g000005
rosa_roxburghii	Rroxscaffold_4G00315740 Rroxscaffold_7G00163270
rosa_rugosa	Rorug01G0125200 Rorug06G0336700
rosa_samantha	Rh1AG144400 Rh1BG114000 Rh1DG151100 Rh6AG448200 Rh6BG452800 Rh6CG461900 Rh6DG448800
rosa_wichuraiana	Rw1G011830 Rw6G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	790
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB7I	CCANNNNNTGG	2 cut(s)	66, 682
AciI	CCGC	1 cut(s)	291
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	66, 339, 682
AgsI	TTSAA	4 cut(s)	75, 205, 599, 719
AjnI	CCWGG	2 cut(s)	391, 675
AluBI	AGCT	5 cut(s)	44, 79, 110, 140, 725
AluI	AGCT	5 cut(s)	44, 79, 110, 140, 725
Ama87I	CYCGRG	2 cut(s)	225, 505
AoxI	GGCC	3 cut(s)	47, 133, 445
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	446, 502
AsuHPI	GGTGA	2 cut(s)	82, 593
AvaI	CYCGRG	2 cut(s)	225, 505
AvaII	GGWCC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	317, 681
BciT130I	CCWGG	2 cut(s)	393, 677
BciVI	GTATCC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	393, 677
Bme18I	GGWCC	1 cut(s)	502
BmeT110I	CYCGRG	2 cut(s)	225, 505
BmgT120I	GGNCC	2 cut(s)	446, 502
BmiI	GGNNCC	2 cut(s)	503, 504
BmrFI	CCNGG	2 cut(s)	393, 677
BpiI	GAAGAC	1 cut(s)	482
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	60, 506, 605, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 339, 682
Bse1I	ACTGG	2 cut(s)	130, 344
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	393, 677
BseDI	CCNNGG	4 cut(s)	60, 506, 605, 676
BseGI	GGATG	3 cut(s)	121, 213, 642
BseLI	CCNNNNNNNGG	3 cut(s)	66, 339, 682
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	130, 344
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	3 cut(s)	49, 135, 447
BsiHKCI	CYCGRG	2 cut(s)	225, 505
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	3 cut(s)	66, 339, 682
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	49, 135, 447
BsoBI	CYCGRG	2 cut(s)	225, 505
Bsp143I	GATC	4 cut(s)	346, 457, 739, 749
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	49, 135, 447
BspCNI	CTCAG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	503, 504
BspMAI	CTGCAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	130, 344
BssECI	CCNNGG	4 cut(s)	60, 506, 605, 676
BssMI	GATC	4 cut(s)	346, 457, 739, 749
BssT1I	CCWWGG	2 cut(s)	60, 605
Bst2UI	CCWGG	2 cut(s)	393, 677
Bst4CI	ACNGT	2 cut(s)	145, 322
Bst6I	CTCTTC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	24, 81
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	121, 213, 642
BstKTI	GATC	4 cut(s)	349, 460, 742, 752
BstMBI	GATC	4 cut(s)	346, 457, 739, 749
BstMWI	GCNNNNNNNGC	3 cut(s)	423, 432, 518
BstNI	CCWGG	2 cut(s)	393, 677
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	2 cut(s)	391, 675
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	482
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	49, 135, 447
BtsCI	GGATG	3 cut(s)	121, 213, 642
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	4 cut(s)	123, 136, 327, 337
Cac8I	GCNNGC	2 cut(s)	24, 81
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	446, 502
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	6 cut(s)	209, 296, 427, 436, 737, 768
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	348, 459, 741, 751
DpnII	GATC	4 cut(s)	346, 457, 739, 749
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	60, 605
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	2 cut(s)	225, 505
EcoO109I	RGGNCCY	2 cut(s)	446, 502
EcoRII	CCWGG	2 cut(s)	391, 675
EcoT14I	CCWWGG	2 cut(s)	60, 605
ErhI	CCWWGG	2 cut(s)	60, 605
FaeI	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	6 cut(s)	208, 295, 426, 435, 736, 767
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	128, 200, 649
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	49, 135, 447
Hin1II	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HphI	GGTGA	2 cut(s)	82, 593
Hpy166II	GTNNAC	5 cut(s)	277, 337, 389, 476, 584
Hpy188I	TCNGA	3 cut(s)	262, 697, 744
Hpy188III	TCNNGA	2 cut(s)	296, 575
Hpy8I	GTNNAC	5 cut(s)	277, 337, 389, 476, 584
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	389, 572
HpyCH4III	ACNGT	2 cut(s)	145, 322
HpyCH4IV	ACGT	2 cut(s)	36, 53
HpyCH4V	TGCA	3 cut(s)	435, 464, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	423, 432, 518
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	2 cut(s)	36, 53
Hsp92II	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
KflI	GGGWCCC	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	346, 457, 739, 749
Lsp1109I	GCAGC	1 cut(s)	70
MaeII	ACGT	2 cut(s)	36, 53
MaeIII	GTNAC	3 cut(s)	316, 658, 754
MalI	GATC	4 cut(s)	348, 459, 741, 751
MboI	GATC	4 cut(s)	346, 457, 739, 749
MboII	GAAGA	3 cut(s)	481, 482, 710
MfeI	CAATTG	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	3 cut(s)	157, 272, 544
MnlI	CCTC	6 cut(s)	234, 389, 501, 520, 627, 636
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	281, 708
Msp20I	TGGCCA	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	393, 677
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	393, 677
MwoI	GCNNNNNNNGC	3 cut(s)	423, 432, 518
NdeII	GATC	4 cut(s)	346, 457, 739, 749
NlaIII	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
NlaIV	GGNNCC	2 cut(s)	503, 504
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	771
PaeR7I	CTCGAG	1 cut(s)	225
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PflMI	CCANNNNNTGG	2 cut(s)	66, 682
PkrI	GCNGC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	391, 675
PspGI	CCWGG	2 cut(s)	391, 675
PspN4I	GGNNCC	2 cut(s)	503, 504
PspPI	GGNCC	2 cut(s)	446, 502
PspPPI	RGGWCCY	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	658
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	281, 708
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	4 cut(s)	346, 457, 739, 749
Sau96I	GGNCC	2 cut(s)	446, 502
ScrFI	CCNGG	2 cut(s)	393, 677
SfcI	CTRYAG	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
SsiI	CCGC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	391, 675
StyI	CCWWGG	2 cut(s)	60, 605
TaaI	ACNGT	2 cut(s)	145, 322
TaiI	ACGT	2 cut(s)	39, 56
TaqI	TCGA	2 cut(s)	226, 232
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
Tru1I	TTAA	2 cut(s)	281, 708
Tru9I	TTAA	2 cut(s)	281, 708
TscAI	CASTG	4 cut(s)	130, 136, 327, 344
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	282, 312, 482
TspRI	CASTG	4 cut(s)	130, 136, 327, 344
Van91I	CCANNNNNTGG	2 cut(s)	66, 682
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	771
XhoI	CTCGAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.