Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006388

Physical Location & Seq

Genomic Coordinates Forward (+)

38485600 .. 38486306

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGCAGGCAAAGTTCGTCACTTGTAAGCCACCTGAAGAGGGCAGTGAAGAAATTAAACCTCATTTTACTTGGCTTTAAGTTAAACCGATGGAAATTGGCTTCAATCCTTGCTTGTACTAACAGAGCTTCTGCAAGGCAGTGCTTGAGCTTCAATGACAGTTTGGGTTTGTATGGCTGCATTGAAGATGATAAGGCCGATGAGAATCGGTGTTTTAGACGGGTTCTTAGCACAAGGACCCATGATCGCGCTTCGGATGATGATGATGATGTTGATCACCGGGCTGATGTTTTCATTGCGAATTTTCGTCGTCAGCTGAGGTTTGAGAGACAGGTTTCTTTGGAGTTAAGGTACTGCAGAAGGGATAGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

125

Amino Acids

14.48

Weight (kDa)

9.54

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006388)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36750
malus_domestica	MD08G1128200.v1.1 MD15G1107700.v1.1
prunus_persica	Prupe.1G460000_v2.0.a1
pyrus_communis	pycom08g10710 pycom15g09840
rosa_chinensis	RchiOBHm_Chr1g0336341 RchiOBHm_Chr6g0305001
rosa_laevigata	RLG00000010929 RLG00000029373
rosa_multiflora	Rmu_co8096954.1_g000001 Rmu_sc0005261.1_g000014 Rmu_sc0023888.1_g000002 Rmu_sc0028342.1_g000005
rosa_roxburghii	Rroxscaffold_4G00315740 Rroxscaffold_7G00163270
rosa_rugosa	Rorug01G0125200 Rorug06G0336700
rosa_samantha	Rh1AG144400 Rh1BG114000 Rh1DG151100 Rh6AG448200 Rh6BG452800 Rh6CG461900 Rh6DG448800
rosa_wichuraiana	Rw1G011830 Rw6G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	118, 353
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	105, 154, 185
AluBI	AGCT	4 cut(s)	128, 150, 316, 369
AluI	AGCT	4 cut(s)	128, 150, 316, 369
Alw26I	GTCTC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	373
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	204, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	2 cut(s)	204, 273
BseGI	GGATG	1 cut(s)	262
BseJI	GATNNNNATC	2 cut(s)	204, 273
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	244, 274
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	294
BssMI	GATC	2 cut(s)	244, 274
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	227, 317
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	247, 277
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	244, 274
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	2 cut(s)	51, 146
BtsIMutI	CAGTG	2 cut(s)	51, 146
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	117, 352
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	2 cut(s)	117, 352
DdeI	CTNAG	2 cut(s)	227, 317
DpnI	GATC	2 cut(s)	246, 276
DpnII	GATC	2 cut(s)	244, 274
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	237
FaeI	CATG	1 cut(s)	245
FaiI	YATR	2 cut(s)	174, 243
FatI	CATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	373
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	134, 180, 357
HpyF3I	CTNAG	2 cut(s)	227, 317
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	244, 274
LpnPI	CCDG	3 cut(s)	47, 293, 317
Lsp1109I	GCAGC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	2 cut(s)	246, 276
MboI	GATC	2 cut(s)	244, 274
MboII	GAAGA	3 cut(s)	49, 61, 197
MluCI	AATT	3 cut(s)	53, 95, 301
MnlI	CCTC	3 cut(s)	33, 71, 312
MseI	TTAA	4 cut(s)	56, 78, 83, 347
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	244, 274
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	237
PspPPI	RGGWCCY	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	118, 353
RsaNI	GTAC	2 cut(s)	117, 352
SaqAI	TTAA	4 cut(s)	56, 78, 83, 347
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	244, 274
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	9 cut(s)	36, 63, 130, 152, 318, 323, 336, 353, 371
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	3 cut(s)	53, 95, 301
SspMI	CTAG	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	3 cut(s)	53, 95, 301
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	4 cut(s)	56, 78, 83, 347
Tru9I	TTAA	4 cut(s)	56, 78, 83, 347
TscAI	CASTG	2 cut(s)	51, 146
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	51, 146
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	301
XspI	CTAG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.